2022-08-17 12:18:02 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 12:18:02 ***** 2022-08-17 12:18:02 INFO: Configuring BUSCO with local environment 2022-08-17 12:18:02 INFO: Mode is genome 2022-08-17 12:18:02 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 12:18:14 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_actinidiae_ICMP19971.fna 2022-08-17 12:18:14 INFO: Downloading file 'https://busco-data.ezlab.org/v5/data/lineages/enterobacterales_odb10.2021-02-23.tar.gz' 2022-08-17 12:18:22 INFO: Decompressing file '/disk3/default/V2/admin/core/data/Pectobacterium/busco_downloads/lineages/enterobacterales_odb10.tar.gz' 2022-08-17 12:18:23 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 12:18:23 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 12:18:23 2022-08-17 12:18:24 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 12:18:24 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 12:18:24 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 12:18:24 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 12:18:24 2022-08-17 12:18:32 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 12:18:32 INFO: Genetic code 11 selected as optimal 2022-08-17 12:18:32 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 12:18:32 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 12:18:32 2022-08-17 12:18:37 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 12:18:42 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 12:18:45 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 12:18:49 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 12:18:52 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 12:18:55 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 12:18:57 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 12:18:59 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 12:19:02 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 12:19:03 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 12:19:03 INFO: Results: C:99.8%[S:99.1%,D:0.7%],F:0.2%,M:0.0%,n:440 2022-08-17 12:19:04 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.8%[S:99.1%,D:0.7%],F:0.2%,M:0.0%,n:440 | |439 Complete BUSCOs (C) | |436 Complete and single-copy BUSCOs (S) | |3 Complete and duplicated BUSCOs (D) | |1 Fragmented BUSCOs (F) | |0 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 12:19:04 INFO: BUSCO analysis done. Total running time: 49 seconds 2022-08-17 12:19:04 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_actinidiae_ICMP19971 2022-08-17 12:19:04 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 12:19:04 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 12:19:04 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 12:19:04 ***** 2022-08-17 12:19:04 INFO: Configuring BUSCO with local environment 2022-08-17 12:19:04 INFO: Mode is genome 2022-08-17 12:19:04 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 12:19:17 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_actinidiae_ICMP19972.fna 2022-08-17 12:19:17 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 12:19:17 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 12:19:17 2022-08-17 12:19:18 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 12:19:18 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 12:19:18 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 12:19:18 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 12:19:18 2022-08-17 12:19:25 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 12:19:26 INFO: Genetic code 11 selected as optimal 2022-08-17 12:19:26 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 12:19:26 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 12:19:26 2022-08-17 12:19:31 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 12:19:35 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 12:19:38 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 12:19:42 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 12:19:45 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 12:19:48 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 12:19:50 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 12:19:52 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 12:19:54 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 12:19:56 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 12:19:56 INFO: Results: C:99.8%[S:99.1%,D:0.7%],F:0.2%,M:0.0%,n:440 2022-08-17 12:19:56 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.8%[S:99.1%,D:0.7%],F:0.2%,M:0.0%,n:440 | |439 Complete BUSCOs (C) | |436 Complete and single-copy BUSCOs (S) | |3 Complete and duplicated BUSCOs (D) | |1 Fragmented BUSCOs (F) | |0 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 12:19:56 INFO: BUSCO analysis done. Total running time: 40 seconds 2022-08-17 12:19:56 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_actinidiae_ICMP19972 2022-08-17 12:19:56 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 12:19:56 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 12:19:57 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 12:19:57 ***** 2022-08-17 12:19:57 INFO: Configuring BUSCO with local environment 2022-08-17 12:19:57 INFO: Mode is genome 2022-08-17 12:19:57 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 12:20:10 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_actinidiae_KKH3.fna 2022-08-17 12:20:10 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 12:20:10 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 12:20:10 2022-08-17 12:20:11 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 12:20:11 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 12:20:11 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 12:20:11 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 12:20:11 2022-08-17 12:20:19 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 12:20:19 INFO: Genetic code 11 selected as optimal 2022-08-17 12:20:19 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 12:20:19 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 12:20:19 2022-08-17 12:20:25 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 12:20:30 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 12:20:33 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 12:20:37 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 12:20:40 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 12:20:43 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 12:20:45 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 12:20:47 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 12:20:50 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 12:20:51 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 12:20:51 INFO: Results: C:99.8%[S:99.1%,D:0.7%],F:0.2%,M:0.0%,n:440 2022-08-17 12:20:51 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.8%[S:99.1%,D:0.7%],F:0.2%,M:0.0%,n:440 | |439 Complete BUSCOs (C) | |436 Complete and single-copy BUSCOs (S) | |3 Complete and duplicated BUSCOs (D) | |1 Fragmented BUSCOs (F) | |0 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 12:20:51 INFO: BUSCO analysis done. Total running time: 42 seconds 2022-08-17 12:20:51 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_actinidiae_KKH3 2022-08-17 12:20:51 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 12:20:51 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 12:20:52 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 12:20:52 ***** 2022-08-17 12:20:52 INFO: Configuring BUSCO with local environment 2022-08-17 12:20:52 INFO: Mode is genome 2022-08-17 12:20:52 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 12:21:05 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_aquaticum_A101-S19-F16.fna 2022-08-17 12:21:05 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 12:21:05 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 12:21:05 2022-08-17 12:21:06 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 12:21:06 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 12:21:06 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 12:21:06 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 12:21:06 2022-08-17 12:21:13 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 12:21:13 INFO: Genetic code 11 selected as optimal 2022-08-17 12:21:13 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 12:21:13 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 12:21:13 2022-08-17 12:21:18 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 12:21:22 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 12:21:26 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 12:21:29 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 12:21:32 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 12:21:35 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 12:21:37 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 12:21:39 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 12:21:41 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 12:21:43 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 12:21:43 INFO: Results: C:99.5%[S:99.3%,D:0.2%],F:0.2%,M:0.3%,n:440 2022-08-17 12:21:43 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.5%[S:99.3%,D:0.2%],F:0.2%,M:0.3%,n:440 | |438 Complete BUSCOs (C) | |437 Complete and single-copy BUSCOs (S) | |1 Complete and duplicated BUSCOs (D) | |1 Fragmented BUSCOs (F) | |1 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 12:21:43 INFO: BUSCO analysis done. Total running time: 38 seconds 2022-08-17 12:21:43 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_aquaticum_A101-S19-F16 2022-08-17 12:21:43 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 12:21:43 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 12:21:44 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 12:21:44 ***** 2022-08-17 12:21:44 INFO: Configuring BUSCO with local environment 2022-08-17 12:21:44 INFO: Mode is genome 2022-08-17 12:21:44 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 12:21:56 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_aquaticum_A104-S21-F16.fna 2022-08-17 12:21:56 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 12:21:56 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 12:21:56 2022-08-17 12:21:57 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 12:21:57 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 12:21:57 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 12:21:57 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 12:21:57 2022-08-17 12:22:04 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 12:22:04 INFO: Genetic code 11 selected as optimal 2022-08-17 12:22:04 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 12:22:04 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 12:22:04 2022-08-17 12:22:09 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 12:22:14 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 12:22:17 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 12:22:21 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 12:22:24 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 12:22:26 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 12:22:29 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 12:22:31 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 12:22:33 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 12:22:35 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 12:22:35 INFO: Results: C:99.5%[S:99.3%,D:0.2%],F:0.2%,M:0.3%,n:440 2022-08-17 12:22:35 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.5%[S:99.3%,D:0.2%],F:0.2%,M:0.3%,n:440 | |438 Complete BUSCOs (C) | |437 Complete and single-copy BUSCOs (S) | |1 Complete and duplicated BUSCOs (D) | |1 Fragmented BUSCOs (F) | |1 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 12:22:35 INFO: BUSCO analysis done. Total running time: 39 seconds 2022-08-17 12:22:35 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_aquaticum_A104-S21-F16 2022-08-17 12:22:35 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 12:22:35 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 12:22:35 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 12:22:35 ***** 2022-08-17 12:22:35 INFO: Configuring BUSCO with local environment 2022-08-17 12:22:35 INFO: Mode is genome 2022-08-17 12:22:35 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 12:22:48 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_aquaticum_A105-S21-F16.fna 2022-08-17 12:22:48 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 12:22:48 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 12:22:48 2022-08-17 12:22:49 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 12:22:49 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 12:22:49 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 12:22:49 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 12:22:49 2022-08-17 12:22:56 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 12:22:56 INFO: Genetic code 11 selected as optimal 2022-08-17 12:22:56 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 12:22:56 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 12:22:56 2022-08-17 12:23:01 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 12:23:05 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 12:23:08 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 12:23:12 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 12:23:15 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 12:23:18 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 12:23:20 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 12:23:22 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 12:23:24 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 12:23:26 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 12:23:26 INFO: Results: C:99.5%[S:99.3%,D:0.2%],F:0.2%,M:0.3%,n:440 2022-08-17 12:23:26 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.5%[S:99.3%,D:0.2%],F:0.2%,M:0.3%,n:440 | |438 Complete BUSCOs (C) | |437 Complete and single-copy BUSCOs (S) | |1 Complete and duplicated BUSCOs (D) | |1 Fragmented BUSCOs (F) | |1 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 12:23:26 INFO: BUSCO analysis done. Total running time: 38 seconds 2022-08-17 12:23:26 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_aquaticum_A105-S21-F16 2022-08-17 12:23:26 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 12:23:26 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 12:23:26 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 12:23:26 ***** 2022-08-17 12:23:26 INFO: Configuring BUSCO with local environment 2022-08-17 12:23:26 INFO: Mode is genome 2022-08-17 12:23:26 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 12:23:39 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_aquaticum_A127-S21-F16.fna 2022-08-17 12:23:39 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 12:23:39 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 12:23:39 2022-08-17 12:23:40 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 12:23:40 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 12:23:40 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 12:23:40 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 12:23:40 2022-08-17 12:23:47 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 12:23:47 INFO: Genetic code 11 selected as optimal 2022-08-17 12:23:47 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 12:23:47 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 12:23:47 2022-08-17 12:23:52 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 12:23:56 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 12:24:00 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 12:24:03 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 12:24:06 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 12:24:09 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 12:24:12 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 12:24:13 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 12:24:15 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 12:24:17 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 12:24:17 INFO: Results: C:99.7%[S:99.5%,D:0.2%],F:0.2%,M:0.1%,n:440 2022-08-17 12:24:17 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.7%[S:99.5%,D:0.2%],F:0.2%,M:0.1%,n:440 | |439 Complete BUSCOs (C) | |438 Complete and single-copy BUSCOs (S) | |1 Complete and duplicated BUSCOs (D) | |1 Fragmented BUSCOs (F) | |0 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 12:24:17 INFO: BUSCO analysis done. Total running time: 38 seconds 2022-08-17 12:24:17 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_aquaticum_A127-S21-F16 2022-08-17 12:24:17 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 12:24:17 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 12:24:18 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 12:24:18 ***** 2022-08-17 12:24:18 INFO: Configuring BUSCO with local environment 2022-08-17 12:24:18 INFO: Mode is genome 2022-08-17 12:24:18 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 12:24:30 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_aquaticum_A212-S19-A16.fna 2022-08-17 12:24:31 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 12:24:31 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 12:24:31 2022-08-17 12:24:31 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 12:24:31 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 12:24:31 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 12:24:31 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 12:24:31 2022-08-17 12:24:38 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 12:24:38 INFO: Genetic code 11 selected as optimal 2022-08-17 12:24:38 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 12:24:38 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 12:24:38 2022-08-17 12:24:43 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 12:24:47 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 12:24:51 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 12:24:54 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 12:24:57 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 12:25:00 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 12:25:02 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 12:25:04 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 12:25:06 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 12:25:08 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 12:25:08 INFO: Results: C:99.7%[S:99.5%,D:0.2%],F:0.2%,M:0.1%,n:440 2022-08-17 12:25:08 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.7%[S:99.5%,D:0.2%],F:0.2%,M:0.1%,n:440 | |439 Complete BUSCOs (C) | |438 Complete and single-copy BUSCOs (S) | |1 Complete and duplicated BUSCOs (D) | |1 Fragmented BUSCOs (F) | |0 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 12:25:08 INFO: BUSCO analysis done. Total running time: 38 seconds 2022-08-17 12:25:08 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_aquaticum_A212-S19-A16 2022-08-17 12:25:08 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 12:25:08 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 12:25:09 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 12:25:09 ***** 2022-08-17 12:25:09 INFO: Configuring BUSCO with local environment 2022-08-17 12:25:09 INFO: Mode is genome 2022-08-17 12:25:09 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 12:25:21 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_aquaticum_A35-S23-M15.fna 2022-08-17 12:25:22 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 12:25:22 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 12:25:21 2022-08-17 12:25:22 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 12:25:22 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 12:25:22 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 12:25:22 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 12:25:22 2022-08-17 12:25:29 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 12:25:29 INFO: Genetic code 11 selected as optimal 2022-08-17 12:25:29 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 12:25:29 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 12:25:29 2022-08-17 12:25:35 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 12:25:39 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 12:25:42 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 12:25:45 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 12:25:49 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 12:25:51 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 12:25:54 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 12:25:56 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 12:25:58 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 12:25:59 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 12:26:00 INFO: Results: C:99.7%[S:99.5%,D:0.2%],F:0.2%,M:0.1%,n:440 2022-08-17 12:26:00 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.7%[S:99.5%,D:0.2%],F:0.2%,M:0.1%,n:440 | |439 Complete BUSCOs (C) | |438 Complete and single-copy BUSCOs (S) | |1 Complete and duplicated BUSCOs (D) | |1 Fragmented BUSCOs (F) | |0 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 12:26:00 INFO: BUSCO analysis done. Total running time: 38 seconds 2022-08-17 12:26:00 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_aquaticum_A35-S23-M15 2022-08-17 12:26:00 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 12:26:00 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 12:26:00 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 12:26:00 ***** 2022-08-17 12:26:00 INFO: Configuring BUSCO with local environment 2022-08-17 12:26:00 INFO: Mode is genome 2022-08-17 12:26:00 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 12:26:13 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_aquaticum_NAK_467.fna 2022-08-17 12:26:13 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 12:26:13 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 12:26:13 2022-08-17 12:26:14 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 12:26:14 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 12:26:14 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 12:26:14 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 12:26:14 2022-08-17 12:26:21 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 12:26:21 INFO: Genetic code 11 selected as optimal 2022-08-17 12:26:21 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 12:26:21 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 12:26:21 2022-08-17 12:26:26 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 12:26:30 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 12:26:34 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 12:26:37 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 12:26:40 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 12:26:43 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 12:26:46 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 12:26:48 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 12:26:50 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 12:26:51 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 12:26:51 INFO: Results: C:99.5%[S:99.3%,D:0.2%],F:0.2%,M:0.3%,n:440 2022-08-17 12:26:52 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.5%[S:99.3%,D:0.2%],F:0.2%,M:0.3%,n:440 | |438 Complete BUSCOs (C) | |437 Complete and single-copy BUSCOs (S) | |1 Complete and duplicated BUSCOs (D) | |1 Fragmented BUSCOs (F) | |1 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 12:26:52 INFO: BUSCO analysis done. Total running time: 39 seconds 2022-08-17 12:26:52 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_aquaticum_NAK_467 2022-08-17 12:26:52 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 12:26:52 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 12:26:52 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 12:26:52 ***** 2022-08-17 12:26:52 INFO: Configuring BUSCO with local environment 2022-08-17 12:26:52 INFO: Mode is genome 2022-08-17 12:26:52 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 12:27:05 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_aroidearum_CFBP8737.fna 2022-08-17 12:27:05 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 12:27:05 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 12:27:05 2022-08-17 12:27:06 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 12:27:06 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 12:27:06 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 12:27:06 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 12:27:06 2022-08-17 12:27:14 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 12:27:14 INFO: Genetic code 11 selected as optimal 2022-08-17 12:27:14 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 12:27:14 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 12:27:14 2022-08-17 12:27:19 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 12:27:24 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 12:27:27 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 12:27:31 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 12:27:34 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 12:27:37 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 12:27:40 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 12:27:42 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 12:27:44 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 12:27:45 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 12:27:46 INFO: Results: C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 2022-08-17 12:27:46 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 | |438 Complete BUSCOs (C) | |436 Complete and single-copy BUSCOs (S) | |2 Complete and duplicated BUSCOs (D) | |1 Fragmented BUSCOs (F) | |1 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 12:27:46 INFO: BUSCO analysis done. Total running time: 41 seconds 2022-08-17 12:27:46 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_aroidearum_CFBP8737 2022-08-17 12:27:46 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 12:27:46 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 12:27:46 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 12:27:46 ***** 2022-08-17 12:27:46 INFO: Configuring BUSCO with local environment 2022-08-17 12:27:46 INFO: Mode is genome 2022-08-17 12:27:46 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 12:27:59 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_aroidearum_KC20.fna 2022-08-17 12:27:59 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 12:27:59 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 12:27:59 2022-08-17 12:28:00 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 12:28:00 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 12:28:00 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 12:28:00 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 12:28:00 2022-08-17 12:28:08 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 12:28:08 INFO: Genetic code 11 selected as optimal 2022-08-17 12:28:08 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 12:28:08 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 12:28:08 2022-08-17 12:28:13 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 12:28:18 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 12:28:21 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 12:28:25 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 12:28:28 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 12:28:31 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 12:28:33 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 12:28:35 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 12:28:38 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 12:28:39 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 12:28:39 INFO: Results: C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 2022-08-17 12:28:39 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 | |438 Complete BUSCOs (C) | |436 Complete and single-copy BUSCOs (S) | |2 Complete and duplicated BUSCOs (D) | |1 Fragmented BUSCOs (F) | |1 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 12:28:39 INFO: BUSCO analysis done. Total running time: 41 seconds 2022-08-17 12:28:39 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_aroidearum_KC20 2022-08-17 12:28:39 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 12:28:39 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 12:28:40 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 12:28:40 ***** 2022-08-17 12:28:40 INFO: Configuring BUSCO with local environment 2022-08-17 12:28:40 INFO: Mode is genome 2022-08-17 12:28:40 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 12:28:53 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_aroidearum_L6.fna 2022-08-17 12:28:53 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 12:28:53 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 12:28:53 2022-08-17 12:28:54 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 12:28:54 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 12:28:54 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 12:28:54 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 12:28:54 2022-08-17 12:29:02 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 12:29:02 INFO: Genetic code 11 selected as optimal 2022-08-17 12:29:02 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 12:29:02 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 12:29:02 2022-08-17 12:29:08 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 12:29:12 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 12:29:16 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 12:29:19 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 12:29:22 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 12:29:25 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 12:29:28 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 12:29:30 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 12:29:32 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 12:29:34 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 12:29:34 INFO: Results: C:99.5%[S:99.3%,D:0.2%],F:0.2%,M:0.3%,n:440 2022-08-17 12:29:34 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.5%[S:99.3%,D:0.2%],F:0.2%,M:0.3%,n:440 | |438 Complete BUSCOs (C) | |437 Complete and single-copy BUSCOs (S) | |1 Complete and duplicated BUSCOs (D) | |1 Fragmented BUSCOs (F) | |1 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 12:29:34 INFO: BUSCO analysis done. Total running time: 41 seconds 2022-08-17 12:29:34 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_aroidearum_L6 2022-08-17 12:29:34 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 12:29:34 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 12:29:35 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 12:29:35 ***** 2022-08-17 12:29:35 INFO: Configuring BUSCO with local environment 2022-08-17 12:29:35 INFO: Mode is genome 2022-08-17 12:29:35 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 12:29:47 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_aroidearum_LJ2.fna 2022-08-17 12:29:48 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 12:29:48 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 12:29:48 2022-08-17 12:29:48 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 12:29:48 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 12:29:48 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 12:29:48 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 12:29:48 2022-08-17 12:29:56 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 12:29:56 INFO: Genetic code 11 selected as optimal 2022-08-17 12:29:56 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 12:29:56 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 12:29:56 2022-08-17 12:30:02 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 12:30:06 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 12:30:09 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 12:30:13 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 12:30:16 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 12:30:19 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 12:30:21 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 12:30:23 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 12:30:26 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 12:30:27 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 12:30:27 INFO: Results: C:99.4%[S:98.9%,D:0.5%],F:0.5%,M:0.1%,n:440 2022-08-17 12:30:27 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.4%[S:98.9%,D:0.5%],F:0.5%,M:0.1%,n:440 | |437 Complete BUSCOs (C) | |435 Complete and single-copy BUSCOs (S) | |2 Complete and duplicated BUSCOs (D) | |2 Fragmented BUSCOs (F) | |1 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 12:30:27 INFO: BUSCO analysis done. Total running time: 40 seconds 2022-08-17 12:30:27 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_aroidearum_LJ2 2022-08-17 12:30:27 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 12:30:27 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 12:30:28 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 12:30:28 ***** 2022-08-17 12:30:28 INFO: Configuring BUSCO with local environment 2022-08-17 12:30:28 INFO: Mode is genome 2022-08-17 12:30:28 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 12:30:41 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_aroidearum_MY10.fna 2022-08-17 12:30:41 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 12:30:41 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 12:30:41 2022-08-17 12:30:42 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 12:30:42 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 12:30:42 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 12:30:42 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 12:30:42 2022-08-17 12:30:50 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 12:30:50 INFO: Genetic code 11 selected as optimal 2022-08-17 12:30:50 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 12:30:50 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 12:30:50 2022-08-17 12:30:55 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 12:30:59 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 12:31:03 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 12:31:06 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 12:31:10 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 12:31:13 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 12:31:15 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 12:31:17 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 12:31:20 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 12:31:21 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 12:31:21 INFO: Results: C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 2022-08-17 12:31:22 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 | |438 Complete BUSCOs (C) | |436 Complete and single-copy BUSCOs (S) | |2 Complete and duplicated BUSCOs (D) | |1 Fragmented BUSCOs (F) | |1 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 12:31:22 INFO: BUSCO analysis done. Total running time: 41 seconds 2022-08-17 12:31:22 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_aroidearum_MY10 2022-08-17 12:31:22 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 12:31:22 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 12:31:22 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 12:31:22 ***** 2022-08-17 12:31:22 INFO: Configuring BUSCO with local environment 2022-08-17 12:31:22 INFO: Mode is genome 2022-08-17 12:31:22 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 12:31:35 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_aroidearum_MY11.fna 2022-08-17 12:31:35 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 12:31:35 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 12:31:35 2022-08-17 12:31:36 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 12:31:36 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 12:31:36 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 12:31:36 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 12:31:36 2022-08-17 12:31:44 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 12:31:44 INFO: Genetic code 11 selected as optimal 2022-08-17 12:31:44 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 12:31:44 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 12:31:44 2022-08-17 12:31:49 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 12:31:54 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 12:31:57 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 12:32:01 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 12:32:04 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 12:32:07 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 12:32:10 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 12:32:12 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 12:32:14 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 12:32:15 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 12:32:16 INFO: Results: C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 2022-08-17 12:32:16 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 | |438 Complete BUSCOs (C) | |436 Complete and single-copy BUSCOs (S) | |2 Complete and duplicated BUSCOs (D) | |1 Fragmented BUSCOs (F) | |1 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 12:32:16 INFO: BUSCO analysis done. Total running time: 41 seconds 2022-08-17 12:32:16 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_aroidearum_MY11 2022-08-17 12:32:16 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 12:32:16 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 12:32:16 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 12:32:16 ***** 2022-08-17 12:32:16 INFO: Configuring BUSCO with local environment 2022-08-17 12:32:16 INFO: Mode is genome 2022-08-17 12:32:17 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 12:32:29 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_aroidearum_MY18.fna 2022-08-17 12:32:29 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 12:32:29 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 12:32:29 2022-08-17 12:32:30 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 12:32:30 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 12:32:30 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 12:32:30 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 12:32:30 2022-08-17 12:32:38 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 12:32:38 INFO: Genetic code 11 selected as optimal 2022-08-17 12:32:38 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 12:32:38 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 12:32:38 2022-08-17 12:32:43 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 12:32:48 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 12:32:51 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 12:32:55 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 12:32:58 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 12:33:01 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 12:33:04 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 12:33:06 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 12:33:08 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 12:33:10 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 12:33:10 INFO: Results: C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 2022-08-17 12:33:10 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 | |438 Complete BUSCOs (C) | |436 Complete and single-copy BUSCOs (S) | |2 Complete and duplicated BUSCOs (D) | |1 Fragmented BUSCOs (F) | |1 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 12:33:10 INFO: BUSCO analysis done. Total running time: 41 seconds 2022-08-17 12:33:10 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_aroidearum_MY18 2022-08-17 12:33:10 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 12:33:10 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 12:33:10 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 12:33:10 ***** 2022-08-17 12:33:10 INFO: Configuring BUSCO with local environment 2022-08-17 12:33:10 INFO: Mode is genome 2022-08-17 12:33:10 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 12:33:23 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_aroidearum_MY19.fna 2022-08-17 12:33:23 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 12:33:23 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 12:33:23 2022-08-17 12:33:24 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 12:33:24 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 12:33:24 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 12:33:24 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 12:33:24 2022-08-17 12:33:32 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 12:33:33 INFO: Genetic code 11 selected as optimal 2022-08-17 12:33:33 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 12:33:33 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 12:33:33 2022-08-17 12:33:38 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 12:33:43 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 12:33:46 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 12:33:50 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 12:33:53 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 12:33:56 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 12:33:59 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 12:34:01 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 12:34:03 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 12:34:05 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 12:34:05 INFO: Results: C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 2022-08-17 12:34:05 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 | |438 Complete BUSCOs (C) | |436 Complete and single-copy BUSCOs (S) | |2 Complete and duplicated BUSCOs (D) | |1 Fragmented BUSCOs (F) | |1 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 12:34:05 INFO: BUSCO analysis done. Total running time: 42 seconds 2022-08-17 12:34:05 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_aroidearum_MY19 2022-08-17 12:34:05 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 12:34:05 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 12:34:06 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 12:34:06 ***** 2022-08-17 12:34:06 INFO: Configuring BUSCO with local environment 2022-08-17 12:34:06 INFO: Mode is genome 2022-08-17 12:34:06 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 12:34:18 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_aroidearum_MY2.fna 2022-08-17 12:34:18 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 12:34:18 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 12:34:18 2022-08-17 12:34:19 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 12:34:19 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 12:34:19 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 12:34:19 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 12:34:19 2022-08-17 12:34:28 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 12:34:28 INFO: Genetic code 11 selected as optimal 2022-08-17 12:34:28 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 12:34:28 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 12:34:28 2022-08-17 12:34:33 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 12:34:38 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 12:34:41 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 12:34:45 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 12:34:48 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 12:34:51 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 12:34:54 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 12:34:56 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 12:34:58 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 12:35:00 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 12:35:00 INFO: Results: C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 2022-08-17 12:35:00 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 | |438 Complete BUSCOs (C) | |436 Complete and single-copy BUSCOs (S) | |2 Complete and duplicated BUSCOs (D) | |1 Fragmented BUSCOs (F) | |1 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 12:35:00 INFO: BUSCO analysis done. Total running time: 42 seconds 2022-08-17 12:35:00 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_aroidearum_MY2 2022-08-17 12:35:00 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 12:35:00 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 12:35:01 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 12:35:01 ***** 2022-08-17 12:35:01 INFO: Configuring BUSCO with local environment 2022-08-17 12:35:01 INFO: Mode is genome 2022-08-17 12:35:01 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 12:35:13 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_aroidearum_MY7.fna 2022-08-17 12:35:13 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 12:35:13 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 12:35:13 2022-08-17 12:35:14 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 12:35:14 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 12:35:14 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 12:35:14 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 12:35:14 2022-08-17 12:35:22 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 12:35:22 INFO: Genetic code 11 selected as optimal 2022-08-17 12:35:22 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 12:35:22 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 12:35:22 2022-08-17 12:35:27 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 12:35:31 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 12:35:35 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 12:35:38 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 12:35:42 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 12:35:45 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 12:35:47 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 12:35:49 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 12:35:51 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 12:35:53 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 12:35:53 INFO: Results: C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 2022-08-17 12:35:53 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 | |438 Complete BUSCOs (C) | |436 Complete and single-copy BUSCOs (S) | |2 Complete and duplicated BUSCOs (D) | |1 Fragmented BUSCOs (F) | |1 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 12:35:53 INFO: BUSCO analysis done. Total running time: 40 seconds 2022-08-17 12:35:53 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_aroidearum_MY7 2022-08-17 12:35:53 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 12:35:53 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 12:35:54 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 12:35:54 ***** 2022-08-17 12:35:54 INFO: Configuring BUSCO with local environment 2022-08-17 12:35:54 INFO: Mode is genome 2022-08-17 12:35:54 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 12:36:06 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_atrosepticum_21A.fna 2022-08-17 12:36:07 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 12:36:07 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 12:36:07 2022-08-17 12:36:07 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 12:36:07 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 12:36:07 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 12:36:07 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 12:36:07 2022-08-17 12:36:16 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 12:36:17 INFO: Genetic code 11 selected as optimal 2022-08-17 12:36:17 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 12:36:17 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 12:36:17 2022-08-17 12:36:22 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 12:36:27 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 12:36:30 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 12:36:34 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 12:36:37 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 12:36:40 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 12:36:43 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 12:36:45 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 12:36:47 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 12:36:48 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 12:36:48 INFO: Results: C:99.8%[S:99.3%,D:0.5%],F:0.2%,M:0.0%,n:440 2022-08-17 12:36:49 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.8%[S:99.3%,D:0.5%],F:0.2%,M:0.0%,n:440 | |439 Complete BUSCOs (C) | |437 Complete and single-copy BUSCOs (S) | |2 Complete and duplicated BUSCOs (D) | |1 Fragmented BUSCOs (F) | |0 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 12:36:49 INFO: BUSCO analysis done. Total running time: 42 seconds 2022-08-17 12:36:49 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_atrosepticum_21A 2022-08-17 12:36:49 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 12:36:49 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 12:36:49 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 12:36:49 ***** 2022-08-17 12:36:49 INFO: Configuring BUSCO with local environment 2022-08-17 12:36:49 INFO: Mode is genome 2022-08-17 12:36:49 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 12:37:02 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_atrosepticum_36A.fna 2022-08-17 12:37:02 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 12:37:02 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 12:37:02 2022-08-17 12:37:03 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 12:37:03 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 12:37:03 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 12:37:03 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 12:37:03 2022-08-17 12:37:11 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 12:37:12 INFO: Genetic code 11 selected as optimal 2022-08-17 12:37:12 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 12:37:12 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 12:37:12 2022-08-17 12:37:17 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 12:37:21 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 12:37:25 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 12:37:29 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 12:37:32 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 12:37:35 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 12:37:37 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 12:37:39 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 12:37:41 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 12:37:43 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 12:37:43 INFO: Results: C:99.6%[S:99.1%,D:0.5%],F:0.5%,M:0.1%,n:440 2022-08-17 12:37:43 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.6%[S:99.1%,D:0.5%],F:0.5%,M:0.1%,n:440 | |438 Complete BUSCOs (C) | |436 Complete and single-copy BUSCOs (S) | |2 Complete and duplicated BUSCOs (D) | |2 Fragmented BUSCOs (F) | |0 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 12:37:43 INFO: BUSCO analysis done. Total running time: 42 seconds 2022-08-17 12:37:43 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_atrosepticum_36A 2022-08-17 12:37:43 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 12:37:43 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 12:37:44 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 12:37:44 ***** 2022-08-17 12:37:44 INFO: Configuring BUSCO with local environment 2022-08-17 12:37:44 INFO: Mode is genome 2022-08-17 12:37:44 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 12:37:57 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_atrosepticum_A597-S4-A17.fna 2022-08-17 12:37:57 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 12:37:57 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 12:37:57 2022-08-17 12:37:58 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 12:37:58 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 12:37:58 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 12:37:58 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 12:37:58 2022-08-17 12:38:05 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 12:38:06 INFO: Genetic code 11 selected as optimal 2022-08-17 12:38:06 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 12:38:06 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 12:38:06 2022-08-17 12:38:11 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 12:38:16 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 12:38:20 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 12:38:23 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 12:38:26 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 12:38:29 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 12:38:32 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 12:38:34 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 12:38:36 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 12:38:38 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 12:38:38 INFO: Results: C:99.8%[S:99.3%,D:0.5%],F:0.2%,M:0.0%,n:440 2022-08-17 12:38:38 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.8%[S:99.3%,D:0.5%],F:0.2%,M:0.0%,n:440 | |439 Complete BUSCOs (C) | |437 Complete and single-copy BUSCOs (S) | |2 Complete and duplicated BUSCOs (D) | |1 Fragmented BUSCOs (F) | |0 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 12:38:38 INFO: BUSCO analysis done. Total running time: 42 seconds 2022-08-17 12:38:38 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_atrosepticum_A597-S4-A17 2022-08-17 12:38:38 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 12:38:38 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 12:38:39 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 12:38:39 ***** 2022-08-17 12:38:39 INFO: Configuring BUSCO with local environment 2022-08-17 12:38:39 INFO: Mode is genome 2022-08-17 12:38:39 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 12:38:51 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_atrosepticum_CFBP_6276_CFBP6276.fna 2022-08-17 12:38:51 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 12:38:51 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 12:38:51 2022-08-17 12:38:52 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 12:38:52 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 12:38:52 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 12:38:52 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 12:38:52 2022-08-17 12:39:00 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 12:39:00 INFO: Genetic code 11 selected as optimal 2022-08-17 12:39:00 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 12:39:00 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 12:39:00 2022-08-17 12:39:06 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 12:39:10 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 12:39:13 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 12:39:17 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 12:39:20 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 12:39:23 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 12:39:26 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 12:39:28 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 12:39:30 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 12:39:32 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 12:39:32 INFO: Results: C:99.8%[S:99.3%,D:0.5%],F:0.2%,M:0.0%,n:440 2022-08-17 12:39:32 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.8%[S:99.3%,D:0.5%],F:0.2%,M:0.0%,n:440 | |439 Complete BUSCOs (C) | |437 Complete and single-copy BUSCOs (S) | |2 Complete and duplicated BUSCOs (D) | |1 Fragmented BUSCOs (F) | |0 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 12:39:32 INFO: BUSCO analysis done. Total running time: 41 seconds 2022-08-17 12:39:32 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_atrosepticum_CFBP_6276_CFBP6276 2022-08-17 12:39:32 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 12:39:32 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 12:39:32 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 12:39:32 ***** 2022-08-17 12:39:32 INFO: Configuring BUSCO with local environment 2022-08-17 12:39:32 INFO: Mode is genome 2022-08-17 12:39:32 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 12:39:45 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_atrosepticum_Green1.fna 2022-08-17 12:39:45 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 12:39:45 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 12:39:45 2022-08-17 12:39:46 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 12:39:46 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 12:39:46 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 12:39:46 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 12:39:46 2022-08-17 12:39:54 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 12:39:54 INFO: Genetic code 11 selected as optimal 2022-08-17 12:39:54 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 12:39:54 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 12:39:54 2022-08-17 12:40:00 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 12:40:04 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 12:40:07 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 12:40:11 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 12:40:14 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 12:40:17 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 12:40:20 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 12:40:22 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 12:40:24 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 12:40:26 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 12:40:26 INFO: Results: C:99.4%[S:98.9%,D:0.5%],F:0.5%,M:0.1%,n:440 2022-08-17 12:40:26 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.4%[S:98.9%,D:0.5%],F:0.5%,M:0.1%,n:440 | |437 Complete BUSCOs (C) | |435 Complete and single-copy BUSCOs (S) | |2 Complete and duplicated BUSCOs (D) | |2 Fragmented BUSCOs (F) | |1 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 12:40:26 INFO: BUSCO analysis done. Total running time: 41 seconds 2022-08-17 12:40:26 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_atrosepticum_Green1 2022-08-17 12:40:26 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 12:40:26 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 12:40:26 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 12:40:26 ***** 2022-08-17 12:40:26 INFO: Configuring BUSCO with local environment 2022-08-17 12:40:26 INFO: Mode is genome 2022-08-17 12:40:26 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 12:40:39 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_atrosepticum_HAI2-SCRI1043.fna 2022-08-17 12:40:39 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 12:40:39 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 12:40:39 2022-08-17 12:40:40 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 12:40:40 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 12:40:40 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 12:40:40 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 12:40:40 2022-08-17 12:40:48 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 12:40:48 INFO: Genetic code 11 selected as optimal 2022-08-17 12:40:48 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 12:40:48 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 12:40:48 2022-08-17 12:40:53 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 12:40:58 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 12:41:01 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 12:41:05 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 12:41:08 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 12:41:10 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 12:41:13 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 12:41:15 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 12:41:17 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 12:41:19 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 12:41:19 INFO: Results: C:99.7%[S:99.5%,D:0.2%],F:0.2%,M:0.1%,n:440 2022-08-17 12:41:19 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.7%[S:99.5%,D:0.2%],F:0.2%,M:0.1%,n:440 | |439 Complete BUSCOs (C) | |438 Complete and single-copy BUSCOs (S) | |1 Complete and duplicated BUSCOs (D) | |1 Fragmented BUSCOs (F) | |0 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 12:41:19 INFO: BUSCO analysis done. Total running time: 40 seconds 2022-08-17 12:41:19 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_atrosepticum_HAI2-SCRI1043 2022-08-17 12:41:19 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 12:41:19 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 12:41:20 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 12:41:20 ***** 2022-08-17 12:41:20 INFO: Configuring BUSCO with local environment 2022-08-17 12:41:20 INFO: Mode is genome 2022-08-17 12:41:20 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 12:41:33 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_atrosepticum_ICMP_1526_ICMP1526.fna 2022-08-17 12:41:33 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 12:41:33 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 12:41:33 2022-08-17 12:41:34 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 12:41:34 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 12:41:34 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 12:41:34 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 12:41:34 2022-08-17 12:41:42 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 12:41:42 INFO: Genetic code 11 selected as optimal 2022-08-17 12:41:42 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 12:41:42 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 12:41:42 2022-08-17 12:41:47 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 12:41:52 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 12:41:55 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 12:41:59 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 12:42:02 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 12:42:05 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 12:42:08 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 12:42:10 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 12:42:12 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 12:42:13 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 12:42:13 INFO: Results: C:94.1%[S:93.6%,D:0.5%],F:0.7%,M:5.2%,n:440 2022-08-17 12:42:14 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:94.1%[S:93.6%,D:0.5%],F:0.7%,M:5.2%,n:440 | |414 Complete BUSCOs (C) | |412 Complete and single-copy BUSCOs (S) | |2 Complete and duplicated BUSCOs (D) | |3 Fragmented BUSCOs (F) | |23 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 12:42:14 INFO: BUSCO analysis done. Total running time: 41 seconds 2022-08-17 12:42:14 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_atrosepticum_ICMP_1526_ICMP1526 2022-08-17 12:42:14 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 12:42:14 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 12:42:14 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 12:42:14 ***** 2022-08-17 12:42:14 INFO: Configuring BUSCO with local environment 2022-08-17 12:42:14 INFO: Mode is genome 2022-08-17 12:42:14 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 12:42:27 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_atrosepticum_JG10-08.fna 2022-08-17 12:42:27 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 12:42:27 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 12:42:27 2022-08-17 12:42:28 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 12:42:28 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 12:42:28 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 12:42:28 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 12:42:28 2022-08-17 12:42:36 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 12:42:36 INFO: Genetic code 11 selected as optimal 2022-08-17 12:42:36 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 12:42:36 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 12:42:36 2022-08-17 12:42:41 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 12:42:46 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 12:42:49 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 12:42:53 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 12:42:56 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 12:42:59 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 12:43:01 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 12:43:03 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 12:43:06 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 12:43:07 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 12:43:07 INFO: Results: C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 2022-08-17 12:43:07 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 | |438 Complete BUSCOs (C) | |436 Complete and single-copy BUSCOs (S) | |2 Complete and duplicated BUSCOs (D) | |1 Fragmented BUSCOs (F) | |1 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 12:43:07 INFO: BUSCO analysis done. Total running time: 41 seconds 2022-08-17 12:43:07 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_atrosepticum_JG10-08 2022-08-17 12:43:07 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 12:43:07 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 12:43:08 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 12:43:08 ***** 2022-08-17 12:43:08 INFO: Configuring BUSCO with local environment 2022-08-17 12:43:08 INFO: Mode is genome 2022-08-17 12:43:08 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 12:43:21 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_atrosepticum_NCPPB3404.fna 2022-08-17 12:43:21 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 12:43:21 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 12:43:21 2022-08-17 12:43:22 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 12:43:22 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 12:43:22 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 12:43:22 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 12:43:22 2022-08-17 12:43:29 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 12:43:30 INFO: Genetic code 11 selected as optimal 2022-08-17 12:43:30 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 12:43:30 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 12:43:30 2022-08-17 12:43:35 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 12:43:39 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 12:43:43 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 12:43:46 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 12:43:49 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 12:43:52 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 12:43:55 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 12:43:57 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 12:43:59 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 12:44:01 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 12:44:01 INFO: Results: C:99.7%[S:99.5%,D:0.2%],F:0.2%,M:0.1%,n:440 2022-08-17 12:44:01 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.7%[S:99.5%,D:0.2%],F:0.2%,M:0.1%,n:440 | |439 Complete BUSCOs (C) | |438 Complete and single-copy BUSCOs (S) | |1 Complete and duplicated BUSCOs (D) | |1 Fragmented BUSCOs (F) | |0 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 12:44:01 INFO: BUSCO analysis done. Total running time: 40 seconds 2022-08-17 12:44:01 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_atrosepticum_NCPPB3404 2022-08-17 12:44:01 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 12:44:01 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 12:44:02 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 12:44:02 ***** 2022-08-17 12:44:02 INFO: Configuring BUSCO with local environment 2022-08-17 12:44:02 INFO: Mode is genome 2022-08-17 12:44:02 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 12:44:14 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_atrosepticum_NCPPB549.fna 2022-08-17 12:44:14 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 12:44:14 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 12:44:14 2022-08-17 12:44:15 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 12:44:15 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 12:44:15 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 12:44:15 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 12:44:15 2022-08-17 12:44:23 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 12:44:24 INFO: Genetic code 11 selected as optimal 2022-08-17 12:44:24 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 12:44:24 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 12:44:24 2022-08-17 12:44:29 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 12:44:33 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 12:44:37 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 12:44:40 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 12:44:43 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 12:44:46 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 12:44:49 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 12:44:51 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 12:44:53 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 12:44:55 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 12:44:55 INFO: Results: C:99.8%[S:99.3%,D:0.5%],F:0.2%,M:0.0%,n:440 2022-08-17 12:44:55 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.8%[S:99.3%,D:0.5%],F:0.2%,M:0.0%,n:440 | |439 Complete BUSCOs (C) | |437 Complete and single-copy BUSCOs (S) | |2 Complete and duplicated BUSCOs (D) | |1 Fragmented BUSCOs (F) | |0 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 12:44:55 INFO: BUSCO analysis done. Total running time: 41 seconds 2022-08-17 12:44:55 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_atrosepticum_NCPPB549 2022-08-17 12:44:55 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 12:44:55 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 12:44:56 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 12:44:56 ***** 2022-08-17 12:44:56 INFO: Configuring BUSCO with local environment 2022-08-17 12:44:56 INFO: Mode is genome 2022-08-17 12:44:56 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 12:45:08 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_atrosepticum_NY1720A.fna 2022-08-17 12:45:09 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 12:45:09 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 12:45:09 2022-08-17 12:45:09 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 12:45:10 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 12:45:10 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 12:45:10 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 12:45:10 2022-08-17 12:45:17 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 12:45:17 INFO: Genetic code 11 selected as optimal 2022-08-17 12:45:17 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 12:45:17 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 12:45:17 2022-08-17 12:45:23 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 12:45:27 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 12:45:30 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 12:45:33 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 12:45:37 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 12:45:39 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 12:45:42 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 12:45:44 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 12:45:46 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 12:45:48 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 12:45:48 INFO: Results: C:99.8%[S:99.3%,D:0.5%],F:0.2%,M:0.0%,n:440 2022-08-17 12:45:48 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.8%[S:99.3%,D:0.5%],F:0.2%,M:0.0%,n:440 | |439 Complete BUSCOs (C) | |437 Complete and single-copy BUSCOs (S) | |2 Complete and duplicated BUSCOs (D) | |1 Fragmented BUSCOs (F) | |0 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 12:45:48 INFO: BUSCO analysis done. Total running time: 40 seconds 2022-08-17 12:45:48 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_atrosepticum_NY1720A 2022-08-17 12:45:48 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 12:45:48 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 12:45:49 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 12:45:49 ***** 2022-08-17 12:45:49 INFO: Configuring BUSCO with local environment 2022-08-17 12:45:49 INFO: Mode is genome 2022-08-17 12:45:49 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 12:46:01 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_atrosepticum_PB72.fna 2022-08-17 12:46:01 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 12:46:01 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 12:46:01 2022-08-17 12:46:02 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 12:46:03 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 12:46:03 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 12:46:03 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 12:46:03 2022-08-17 12:46:10 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 12:46:11 INFO: Genetic code 11 selected as optimal 2022-08-17 12:46:11 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 12:46:11 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 12:46:11 2022-08-17 12:46:16 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 12:46:21 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 12:46:24 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 12:46:27 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 12:46:30 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 12:46:33 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 12:46:36 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 12:46:38 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 12:46:40 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 12:46:42 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 12:46:42 INFO: Results: C:99.8%[S:99.3%,D:0.5%],F:0.2%,M:0.0%,n:440 2022-08-17 12:46:42 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.8%[S:99.3%,D:0.5%],F:0.2%,M:0.0%,n:440 | |439 Complete BUSCOs (C) | |437 Complete and single-copy BUSCOs (S) | |2 Complete and duplicated BUSCOs (D) | |1 Fragmented BUSCOs (F) | |0 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 12:46:42 INFO: BUSCO analysis done. Total running time: 40 seconds 2022-08-17 12:46:42 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_atrosepticum_PB72 2022-08-17 12:46:42 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 12:46:42 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 12:46:42 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 12:46:42 ***** 2022-08-17 12:46:42 INFO: Configuring BUSCO with local environment 2022-08-17 12:46:42 INFO: Mode is genome 2022-08-17 12:46:42 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 12:46:55 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_atrosepticum_SCRI1043_SCRI1043.fna 2022-08-17 12:46:55 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 12:46:55 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 12:46:55 2022-08-17 12:46:56 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 12:46:56 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 12:46:56 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 12:46:56 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 12:46:56 2022-08-17 12:47:05 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 12:47:05 INFO: Genetic code 11 selected as optimal 2022-08-17 12:47:05 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 12:47:05 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 12:47:05 2022-08-17 12:47:11 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 12:47:15 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 12:47:18 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 12:47:22 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 12:47:25 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 12:47:28 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 12:47:31 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 12:47:33 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 12:47:35 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 12:47:37 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 12:47:37 INFO: Results: C:99.7%[S:99.5%,D:0.2%],F:0.2%,M:0.1%,n:440 2022-08-17 12:47:37 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.7%[S:99.5%,D:0.2%],F:0.2%,M:0.1%,n:440 | |439 Complete BUSCOs (C) | |438 Complete and single-copy BUSCOs (S) | |1 Complete and duplicated BUSCOs (D) | |1 Fragmented BUSCOs (F) | |0 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 12:47:37 INFO: BUSCO analysis done. Total running time: 42 seconds 2022-08-17 12:47:37 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_atrosepticum_SCRI1043_SCRI1043 2022-08-17 12:47:37 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 12:47:37 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 12:47:38 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 12:47:38 ***** 2022-08-17 12:47:38 INFO: Configuring BUSCO with local environment 2022-08-17 12:47:38 INFO: Mode is genome 2022-08-17 12:47:38 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 12:47:50 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_atrosepticum_SS26.fna 2022-08-17 12:47:50 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 12:47:50 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 12:47:50 2022-08-17 12:47:51 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 12:47:51 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 12:47:51 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 12:47:51 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 12:47:51 2022-08-17 12:47:59 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 12:47:59 INFO: Genetic code 11 selected as optimal 2022-08-17 12:47:59 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 12:47:59 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 12:47:59 2022-08-17 12:48:05 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 12:48:09 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 12:48:13 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 12:48:16 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 12:48:19 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 12:48:22 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 12:48:25 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 12:48:27 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 12:48:29 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 12:48:31 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 12:48:31 INFO: Results: C:99.1%[S:98.6%,D:0.5%],F:0.7%,M:0.2%,n:440 2022-08-17 12:48:31 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.1%[S:98.6%,D:0.5%],F:0.7%,M:0.2%,n:440 | |436 Complete BUSCOs (C) | |434 Complete and single-copy BUSCOs (S) | |2 Complete and duplicated BUSCOs (D) | |3 Fragmented BUSCOs (F) | |1 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 12:48:31 INFO: BUSCO analysis done. Total running time: 41 seconds 2022-08-17 12:48:31 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_atrosepticum_SS26 2022-08-17 12:48:31 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 12:48:31 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 12:48:32 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 12:48:32 ***** 2022-08-17 12:48:32 INFO: Configuring BUSCO with local environment 2022-08-17 12:48:32 INFO: Mode is genome 2022-08-17 12:48:32 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 12:48:44 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_betavasculorum_NCPPB2793.fna 2022-08-17 12:48:45 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 12:48:45 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 12:48:45 2022-08-17 12:48:45 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 12:48:46 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 12:48:46 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 12:48:46 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 12:48:46 2022-08-17 12:48:53 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 12:48:53 INFO: Genetic code 11 selected as optimal 2022-08-17 12:48:53 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 12:48:53 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 12:48:53 2022-08-17 12:48:59 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 12:49:03 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 12:49:06 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 12:49:10 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 12:49:13 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 12:49:16 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 12:49:18 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 12:49:20 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 12:49:22 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 12:49:24 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 12:49:24 INFO: Results: C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 2022-08-17 12:49:24 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 | |438 Complete BUSCOs (C) | |436 Complete and single-copy BUSCOs (S) | |2 Complete and duplicated BUSCOs (D) | |1 Fragmented BUSCOs (F) | |1 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 12:49:24 INFO: BUSCO analysis done. Total running time: 40 seconds 2022-08-17 12:49:24 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_betavasculorum_NCPPB2793 2022-08-17 12:49:24 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 12:49:24 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 12:49:25 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 12:49:25 ***** 2022-08-17 12:49:25 INFO: Configuring BUSCO with local environment 2022-08-17 12:49:25 INFO: Mode is genome 2022-08-17 12:49:25 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 12:49:38 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_betavasculorum_NCPPB2795.fna 2022-08-17 12:49:38 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 12:49:38 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 12:49:38 2022-08-17 12:49:39 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 12:49:39 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 12:49:39 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 12:49:39 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 12:49:39 2022-08-17 12:49:46 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 12:49:46 INFO: Genetic code 11 selected as optimal 2022-08-17 12:49:46 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 12:49:46 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 12:49:46 2022-08-17 12:49:51 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 12:49:55 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 12:49:59 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 12:50:02 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 12:50:06 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 12:50:08 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 12:50:11 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 12:50:13 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 12:50:15 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 12:50:17 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 12:50:17 INFO: Results: C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 2022-08-17 12:50:17 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 | |438 Complete BUSCOs (C) | |436 Complete and single-copy BUSCOs (S) | |2 Complete and duplicated BUSCOs (D) | |1 Fragmented BUSCOs (F) | |1 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 12:50:17 INFO: BUSCO analysis done. Total running time: 39 seconds 2022-08-17 12:50:17 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_betavasculorum_NCPPB2795 2022-08-17 12:50:17 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 12:50:17 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 12:50:18 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 12:50:18 ***** 2022-08-17 12:50:18 INFO: Configuring BUSCO with local environment 2022-08-17 12:50:18 INFO: Mode is genome 2022-08-17 12:50:18 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 12:50:30 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_brasiliense_1692.fna 2022-08-17 12:50:30 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 12:50:30 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 12:50:30 2022-08-17 12:50:31 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 12:50:31 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 12:50:31 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 12:50:31 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 12:50:31 2022-08-17 12:50:39 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 12:50:40 INFO: Genetic code 11 selected as optimal 2022-08-17 12:50:40 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 12:50:40 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 12:50:40 2022-08-17 12:50:45 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 12:50:49 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 12:50:53 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 12:50:56 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 12:50:59 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 12:51:02 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 12:51:05 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 12:51:07 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 12:51:09 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 12:51:11 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 12:51:11 INFO: Results: C:99.6%[S:98.9%,D:0.7%],F:0.2%,M:0.2%,n:440 2022-08-17 12:51:11 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.6%[S:98.9%,D:0.7%],F:0.2%,M:0.2%,n:440 | |438 Complete BUSCOs (C) | |435 Complete and single-copy BUSCOs (S) | |3 Complete and duplicated BUSCOs (D) | |1 Fragmented BUSCOs (F) | |1 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 12:51:11 INFO: BUSCO analysis done. Total running time: 41 seconds 2022-08-17 12:51:11 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_brasiliense_1692 2022-08-17 12:51:11 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 12:51:11 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 12:51:11 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 12:51:11 ***** 2022-08-17 12:51:11 INFO: Configuring BUSCO with local environment 2022-08-17 12:51:11 INFO: Mode is genome 2022-08-17 12:51:11 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 12:51:24 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_brasiliense_A079-S20-O15.fna 2022-08-17 12:51:24 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 12:51:24 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 12:51:24 2022-08-17 12:51:25 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 12:51:25 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 12:51:25 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 12:51:25 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 12:51:25 2022-08-17 12:51:33 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 12:51:33 INFO: Genetic code 11 selected as optimal 2022-08-17 12:51:33 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 12:51:33 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 12:51:33 2022-08-17 12:51:39 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 12:51:43 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 12:51:47 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 12:51:50 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 12:51:53 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 12:51:56 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 12:51:59 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 12:52:01 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 12:52:03 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 12:52:05 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 12:52:05 INFO: Results: C:99.5%[S:99.3%,D:0.2%],F:0.2%,M:0.3%,n:440 2022-08-17 12:52:05 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.5%[S:99.3%,D:0.2%],F:0.2%,M:0.3%,n:440 | |438 Complete BUSCOs (C) | |437 Complete and single-copy BUSCOs (S) | |1 Complete and duplicated BUSCOs (D) | |1 Fragmented BUSCOs (F) | |1 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 12:52:05 INFO: BUSCO analysis done. Total running time: 41 seconds 2022-08-17 12:52:05 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_brasiliense_A079-S20-O15 2022-08-17 12:52:05 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 12:52:05 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 12:52:05 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 12:52:05 ***** 2022-08-17 12:52:05 INFO: Configuring BUSCO with local environment 2022-08-17 12:52:05 INFO: Mode is genome 2022-08-17 12:52:06 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 12:52:18 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_brasiliense_A1.fna 2022-08-17 12:52:18 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 12:52:18 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 12:52:18 2022-08-17 12:52:19 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 12:52:19 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 12:52:19 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 12:52:19 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 12:52:19 2022-08-17 12:52:26 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 12:52:26 INFO: Genetic code 11 selected as optimal 2022-08-17 12:52:26 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 12:52:26 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 12:52:26 2022-08-17 12:52:31 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 12:52:36 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 12:52:39 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 12:52:43 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 12:52:46 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 12:52:48 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 12:52:51 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 12:52:53 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 12:52:55 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 12:52:57 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 12:52:57 INFO: Results: C:97.8%[S:97.3%,D:0.5%],F:0.7%,M:1.5%,n:440 2022-08-17 12:52:57 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:97.8%[S:97.3%,D:0.5%],F:0.7%,M:1.5%,n:440 | |430 Complete BUSCOs (C) | |428 Complete and single-copy BUSCOs (S) | |2 Complete and duplicated BUSCOs (D) | |3 Fragmented BUSCOs (F) | |7 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 12:52:57 INFO: BUSCO analysis done. Total running time: 39 seconds 2022-08-17 12:52:57 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_brasiliense_A1 2022-08-17 12:52:57 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 12:52:57 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 12:52:57 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 12:52:57 ***** 2022-08-17 12:52:57 INFO: Configuring BUSCO with local environment 2022-08-17 12:52:57 INFO: Mode is genome 2022-08-17 12:52:57 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 12:53:10 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_brasiliense_B6.fna 2022-08-17 12:53:10 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 12:53:10 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 12:53:10 2022-08-17 12:53:11 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 12:53:11 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 12:53:11 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 12:53:11 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 12:53:11 2022-08-17 12:53:19 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 12:53:19 INFO: Genetic code 11 selected as optimal 2022-08-17 12:53:19 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 12:53:19 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 12:53:19 2022-08-17 12:53:24 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 12:53:29 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 12:53:32 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 12:53:35 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 12:53:39 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 12:53:41 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 12:53:44 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 12:53:46 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 12:53:48 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 12:53:50 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 12:53:50 INFO: Results: C:99.4%[S:98.9%,D:0.5%],F:0.5%,M:0.1%,n:440 2022-08-17 12:53:50 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.4%[S:98.9%,D:0.5%],F:0.5%,M:0.1%,n:440 | |437 Complete BUSCOs (C) | |435 Complete and single-copy BUSCOs (S) | |2 Complete and duplicated BUSCOs (D) | |2 Fragmented BUSCOs (F) | |1 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 12:53:50 INFO: BUSCO analysis done. Total running time: 40 seconds 2022-08-17 12:53:50 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_brasiliense_B6 2022-08-17 12:53:50 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 12:53:50 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 12:53:51 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 12:53:51 ***** 2022-08-17 12:53:51 INFO: Configuring BUSCO with local environment 2022-08-17 12:53:51 INFO: Mode is genome 2022-08-17 12:53:51 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 12:54:03 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_brasiliense_BC1.fna 2022-08-17 12:54:04 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 12:54:04 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 12:54:04 2022-08-17 12:54:04 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 12:54:04 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 12:54:04 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 12:54:04 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 12:54:04 2022-08-17 12:54:13 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 12:54:13 INFO: Genetic code 11 selected as optimal 2022-08-17 12:54:13 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 12:54:13 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 12:54:13 2022-08-17 12:54:19 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 12:54:23 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 12:54:27 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 12:54:30 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 12:54:33 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 12:54:36 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 12:54:39 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 12:54:41 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 12:54:43 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 12:54:45 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 12:54:45 INFO: Results: C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 2022-08-17 12:54:45 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 | |438 Complete BUSCOs (C) | |436 Complete and single-copy BUSCOs (S) | |2 Complete and duplicated BUSCOs (D) | |1 Fragmented BUSCOs (F) | |1 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 12:54:45 INFO: BUSCO analysis done. Total running time: 42 seconds 2022-08-17 12:54:45 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_brasiliense_BC1 2022-08-17 12:54:45 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 12:54:45 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 12:54:46 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 12:54:46 ***** 2022-08-17 12:54:46 INFO: Configuring BUSCO with local environment 2022-08-17 12:54:46 INFO: Mode is genome 2022-08-17 12:54:46 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 12:54:58 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_brasiliense_BD255.fna 2022-08-17 12:54:58 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 12:54:58 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 12:54:58 2022-08-17 12:54:59 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 12:54:59 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 12:54:59 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 12:54:59 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 12:54:59 2022-08-17 12:55:07 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 12:55:07 INFO: Genetic code 11 selected as optimal 2022-08-17 12:55:07 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 12:55:07 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 12:55:07 2022-08-17 12:55:13 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 12:55:17 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 12:55:21 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 12:55:24 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 12:55:27 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 12:55:30 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 12:55:33 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 12:55:35 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 12:55:37 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 12:55:39 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 12:55:39 INFO: Results: C:99.6%[S:98.9%,D:0.7%],F:0.2%,M:0.2%,n:440 2022-08-17 12:55:39 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.6%[S:98.9%,D:0.7%],F:0.2%,M:0.2%,n:440 | |438 Complete BUSCOs (C) | |435 Complete and single-copy BUSCOs (S) | |3 Complete and duplicated BUSCOs (D) | |1 Fragmented BUSCOs (F) | |1 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 12:55:39 INFO: BUSCO analysis done. Total running time: 41 seconds 2022-08-17 12:55:39 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_brasiliense_BD255 2022-08-17 12:55:39 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 12:55:39 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 12:55:39 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 12:55:39 ***** 2022-08-17 12:55:39 INFO: Configuring BUSCO with local environment 2022-08-17 12:55:39 INFO: Mode is genome 2022-08-17 12:55:40 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 12:55:52 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_brasiliense_BL-2.fna 2022-08-17 12:55:52 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 12:55:52 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 12:55:52 2022-08-17 12:55:53 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 12:55:53 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 12:55:53 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 12:55:53 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 12:55:53 2022-08-17 12:56:01 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 12:56:01 INFO: Genetic code 11 selected as optimal 2022-08-17 12:56:01 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 12:56:01 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 12:56:01 2022-08-17 12:56:06 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 12:56:11 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 12:56:14 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 12:56:18 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 12:56:21 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 12:56:24 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 12:56:27 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 12:56:29 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 12:56:31 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 12:56:32 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 12:56:33 INFO: Results: C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 2022-08-17 12:56:33 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 | |438 Complete BUSCOs (C) | |436 Complete and single-copy BUSCOs (S) | |2 Complete and duplicated BUSCOs (D) | |1 Fragmented BUSCOs (F) | |1 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 12:56:33 INFO: BUSCO analysis done. Total running time: 40 seconds 2022-08-17 12:56:33 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_brasiliense_BL-2 2022-08-17 12:56:33 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 12:56:33 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 12:56:33 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 12:56:33 ***** 2022-08-17 12:56:33 INFO: Configuring BUSCO with local environment 2022-08-17 12:56:33 INFO: Mode is genome 2022-08-17 12:56:33 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 12:56:46 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_brasiliense_BZA12.fna 2022-08-17 12:56:46 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 12:56:46 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 12:56:46 2022-08-17 12:56:47 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 12:56:47 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 12:56:47 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 12:56:47 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 12:56:47 2022-08-17 12:56:55 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 12:56:55 INFO: Genetic code 11 selected as optimal 2022-08-17 12:56:55 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 12:56:55 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 12:56:55 2022-08-17 12:57:00 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 12:57:05 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 12:57:08 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 12:57:12 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 12:57:15 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 12:57:18 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 12:57:20 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 12:57:22 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 12:57:24 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 12:57:26 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 12:57:26 INFO: Results: C:99.3%[S:99.1%,D:0.2%],F:0.2%,M:0.5%,n:440 2022-08-17 12:57:26 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.3%[S:99.1%,D:0.2%],F:0.2%,M:0.5%,n:440 | |437 Complete BUSCOs (C) | |436 Complete and single-copy BUSCOs (S) | |1 Complete and duplicated BUSCOs (D) | |1 Fragmented BUSCOs (F) | |2 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 12:57:26 INFO: BUSCO analysis done. Total running time: 40 seconds 2022-08-17 12:57:26 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_brasiliense_BZA12 2022-08-17 12:57:26 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 12:57:26 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 12:57:27 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 12:57:27 ***** 2022-08-17 12:57:27 INFO: Configuring BUSCO with local environment 2022-08-17 12:57:27 INFO: Mode is genome 2022-08-17 12:57:27 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 12:57:39 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_brasiliense_CFBP3230.fna 2022-08-17 12:57:40 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 12:57:40 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 12:57:40 2022-08-17 12:57:41 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 12:57:41 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 12:57:41 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 12:57:41 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 12:57:41 2022-08-17 12:57:48 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 12:57:49 INFO: Genetic code 11 selected as optimal 2022-08-17 12:57:49 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 12:57:49 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 12:57:49 2022-08-17 12:57:54 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 12:57:58 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 12:58:02 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 12:58:05 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 12:58:08 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 12:58:11 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 12:58:14 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 12:58:16 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 12:58:18 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 12:58:19 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 12:58:20 INFO: Results: C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 2022-08-17 12:58:20 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 | |438 Complete BUSCOs (C) | |436 Complete and single-copy BUSCOs (S) | |2 Complete and duplicated BUSCOs (D) | |1 Fragmented BUSCOs (F) | |1 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 12:58:20 INFO: BUSCO analysis done. Total running time: 40 seconds 2022-08-17 12:58:20 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_brasiliense_CFBP3230 2022-08-17 12:58:20 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 12:58:20 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 12:58:20 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 12:58:20 ***** 2022-08-17 12:58:20 INFO: Configuring BUSCO with local environment 2022-08-17 12:58:20 INFO: Mode is genome 2022-08-17 12:58:20 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 12:58:33 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_brasiliense_CFBP5381.fna 2022-08-17 12:58:33 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 12:58:33 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 12:58:33 2022-08-17 12:58:34 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 12:58:34 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 12:58:34 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 12:58:34 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 12:58:34 2022-08-17 12:58:41 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 12:58:42 INFO: Genetic code 11 selected as optimal 2022-08-17 12:58:42 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 12:58:42 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 12:58:42 2022-08-17 12:58:47 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 12:58:51 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 12:58:55 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 12:58:58 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 12:59:01 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 12:59:04 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 12:59:06 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 12:59:08 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 12:59:10 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 12:59:12 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 12:59:12 INFO: Results: C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 2022-08-17 12:59:12 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 | |438 Complete BUSCOs (C) | |436 Complete and single-copy BUSCOs (S) | |2 Complete and duplicated BUSCOs (D) | |1 Fragmented BUSCOs (F) | |1 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 12:59:12 INFO: BUSCO analysis done. Total running time: 39 seconds 2022-08-17 12:59:12 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_brasiliense_CFBP5381 2022-08-17 12:59:12 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 12:59:12 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 12:59:13 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 12:59:13 ***** 2022-08-17 12:59:13 INFO: Configuring BUSCO with local environment 2022-08-17 12:59:13 INFO: Mode is genome 2022-08-17 12:59:13 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 12:59:25 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_brasiliense_CFBP7357.fna 2022-08-17 12:59:26 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 12:59:26 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 12:59:26 2022-08-17 12:59:26 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 12:59:26 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 12:59:26 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 12:59:26 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 12:59:26 2022-08-17 12:59:34 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 12:59:34 INFO: Genetic code 11 selected as optimal 2022-08-17 12:59:34 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 12:59:34 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 12:59:34 2022-08-17 12:59:40 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 12:59:44 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 12:59:47 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 12:59:51 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 12:59:54 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 12:59:57 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 12:59:59 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 13:00:01 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 13:00:03 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 13:00:05 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 13:00:05 INFO: Results: C:99.4%[S:98.9%,D:0.5%],F:0.5%,M:0.1%,n:440 2022-08-17 13:00:05 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.4%[S:98.9%,D:0.5%],F:0.5%,M:0.1%,n:440 | |437 Complete BUSCOs (C) | |435 Complete and single-copy BUSCOs (S) | |2 Complete and duplicated BUSCOs (D) | |2 Fragmented BUSCOs (F) | |1 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 13:00:05 INFO: BUSCO analysis done. Total running time: 40 seconds 2022-08-17 13:00:05 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_brasiliense_CFBP7357 2022-08-17 13:00:05 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 13:00:05 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 13:00:06 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 13:00:06 ***** 2022-08-17 13:00:06 INFO: Configuring BUSCO with local environment 2022-08-17 13:00:06 INFO: Mode is genome 2022-08-17 13:00:06 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 13:00:18 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_brasiliense_CFBP8736.fna 2022-08-17 13:00:19 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 13:00:19 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 13:00:19 2022-08-17 13:00:19 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 13:00:19 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 13:00:19 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 13:00:19 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 13:00:19 2022-08-17 13:00:27 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 13:00:27 INFO: Genetic code 11 selected as optimal 2022-08-17 13:00:27 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 13:00:27 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 13:00:27 2022-08-17 13:00:32 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 13:00:37 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 13:00:40 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 13:00:43 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 13:00:47 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 13:00:49 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 13:00:52 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 13:00:54 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 13:00:56 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 13:00:58 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 13:00:58 INFO: Results: C:99.3%[S:99.1%,D:0.2%],F:0.2%,M:0.5%,n:440 2022-08-17 13:00:58 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.3%[S:99.1%,D:0.2%],F:0.2%,M:0.5%,n:440 | |437 Complete BUSCOs (C) | |436 Complete and single-copy BUSCOs (S) | |1 Complete and duplicated BUSCOs (D) | |1 Fragmented BUSCOs (F) | |2 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 13:00:58 INFO: BUSCO analysis done. Total running time: 40 seconds 2022-08-17 13:00:58 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_brasiliense_CFBP8736 2022-08-17 13:00:58 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 13:00:58 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 13:00:59 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 13:00:59 ***** 2022-08-17 13:00:59 INFO: Configuring BUSCO with local environment 2022-08-17 13:00:59 INFO: Mode is genome 2022-08-17 13:00:59 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 13:01:11 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_brasiliense_CFIA1001.fna 2022-08-17 13:01:11 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 13:01:11 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 13:01:11 2022-08-17 13:01:12 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 13:01:12 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 13:01:12 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 13:01:12 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 13:01:12 2022-08-17 13:01:20 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 13:01:20 INFO: Genetic code 11 selected as optimal 2022-08-17 13:01:20 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 13:01:20 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 13:01:20 2022-08-17 13:01:25 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 13:01:30 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 13:01:33 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 13:01:37 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 13:01:40 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 13:01:42 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 13:01:45 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 13:01:47 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 13:01:49 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 13:01:51 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 13:01:51 INFO: Results: C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 2022-08-17 13:01:51 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 | |438 Complete BUSCOs (C) | |436 Complete and single-copy BUSCOs (S) | |2 Complete and duplicated BUSCOs (D) | |1 Fragmented BUSCOs (F) | |1 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 13:01:51 INFO: BUSCO analysis done. Total running time: 40 seconds 2022-08-17 13:01:51 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_brasiliense_CFIA1001 2022-08-17 13:01:51 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 13:01:51 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 13:01:52 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 13:01:52 ***** 2022-08-17 13:01:52 INFO: Configuring BUSCO with local environment 2022-08-17 13:01:52 INFO: Mode is genome 2022-08-17 13:01:52 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 13:02:04 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_brasiliense_CFIA1009.fna 2022-08-17 13:02:04 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 13:02:04 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 13:02:04 2022-08-17 13:02:05 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 13:02:05 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 13:02:05 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 13:02:05 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 13:02:05 2022-08-17 13:02:13 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 13:02:13 INFO: Genetic code 11 selected as optimal 2022-08-17 13:02:13 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 13:02:13 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 13:02:13 2022-08-17 13:02:18 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 13:02:22 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 13:02:25 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 13:02:29 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 13:02:32 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 13:02:35 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 13:02:37 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 13:02:39 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 13:02:41 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 13:02:43 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 13:02:43 INFO: Results: C:98.9%[S:98.4%,D:0.5%],F:0.9%,M:0.2%,n:440 2022-08-17 13:02:43 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:98.9%[S:98.4%,D:0.5%],F:0.9%,M:0.2%,n:440 | |435 Complete BUSCOs (C) | |433 Complete and single-copy BUSCOs (S) | |2 Complete and duplicated BUSCOs (D) | |4 Fragmented BUSCOs (F) | |1 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 13:02:43 INFO: BUSCO analysis done. Total running time: 39 seconds 2022-08-17 13:02:43 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_brasiliense_CFIA1009 2022-08-17 13:02:43 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 13:02:43 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 13:02:44 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 13:02:44 ***** 2022-08-17 13:02:44 INFO: Configuring BUSCO with local environment 2022-08-17 13:02:44 INFO: Mode is genome 2022-08-17 13:02:44 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 13:02:57 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_brasiliense_CFIA1033.fna 2022-08-17 13:02:57 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 13:02:57 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 13:02:57 2022-08-17 13:02:58 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 13:02:58 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 13:02:58 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 13:02:58 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 13:02:58 2022-08-17 13:03:05 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 13:03:06 INFO: Genetic code 11 selected as optimal 2022-08-17 13:03:06 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 13:03:06 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 13:03:06 2022-08-17 13:03:11 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 13:03:15 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 13:03:19 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 13:03:22 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 13:03:25 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 13:03:28 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 13:03:30 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 13:03:32 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 13:03:34 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 13:03:36 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 13:03:36 INFO: Results: C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 2022-08-17 13:03:36 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 | |438 Complete BUSCOs (C) | |436 Complete and single-copy BUSCOs (S) | |2 Complete and duplicated BUSCOs (D) | |1 Fragmented BUSCOs (F) | |1 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 13:03:36 INFO: BUSCO analysis done. Total running time: 40 seconds 2022-08-17 13:03:36 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_brasiliense_CFIA1033 2022-08-17 13:03:36 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 13:03:36 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 13:03:37 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 13:03:37 ***** 2022-08-17 13:03:37 INFO: Configuring BUSCO with local environment 2022-08-17 13:03:37 INFO: Mode is genome 2022-08-17 13:03:37 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 13:03:49 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_brasiliense_F126.fna 2022-08-17 13:03:50 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 13:03:50 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 13:03:50 2022-08-17 13:03:50 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 13:03:50 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 13:03:50 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 13:03:50 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 13:03:50 2022-08-17 13:03:59 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 13:03:59 INFO: Genetic code 11 selected as optimal 2022-08-17 13:03:59 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 13:03:59 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 13:03:59 2022-08-17 13:04:05 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 13:04:09 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 13:04:12 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 13:04:16 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 13:04:19 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 13:04:22 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 13:04:24 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 13:04:26 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 13:04:28 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 13:04:30 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 13:04:30 INFO: Results: C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 2022-08-17 13:04:30 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 | |438 Complete BUSCOs (C) | |436 Complete and single-copy BUSCOs (S) | |2 Complete and duplicated BUSCOs (D) | |1 Fragmented BUSCOs (F) | |1 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 13:04:30 INFO: BUSCO analysis done. Total running time: 41 seconds 2022-08-17 13:04:30 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_brasiliense_F126 2022-08-17 13:04:30 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 13:04:30 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 13:04:31 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 13:04:31 ***** 2022-08-17 13:04:31 INFO: Configuring BUSCO with local environment 2022-08-17 13:04:31 INFO: Mode is genome 2022-08-17 13:04:31 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 13:04:44 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_brasiliense_F152.fna 2022-08-17 13:04:44 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 13:04:44 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 13:04:44 2022-08-17 13:04:45 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 13:04:45 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 13:04:45 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 13:04:45 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 13:04:45 2022-08-17 13:04:52 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 13:04:52 INFO: Genetic code 11 selected as optimal 2022-08-17 13:04:52 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 13:04:52 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 13:04:52 2022-08-17 13:04:57 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 13:05:01 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 13:05:04 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 13:05:08 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 13:05:11 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 13:05:14 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 13:05:17 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 13:05:18 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 13:05:21 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 13:05:22 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 13:05:22 INFO: Results: C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 2022-08-17 13:05:22 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 | |438 Complete BUSCOs (C) | |436 Complete and single-copy BUSCOs (S) | |2 Complete and duplicated BUSCOs (D) | |1 Fragmented BUSCOs (F) | |1 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 13:05:22 INFO: BUSCO analysis done. Total running time: 39 seconds 2022-08-17 13:05:22 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_brasiliense_F152 2022-08-17 13:05:22 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 13:05:22 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 13:05:23 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 13:05:23 ***** 2022-08-17 13:05:23 INFO: Configuring BUSCO with local environment 2022-08-17 13:05:23 INFO: Mode is genome 2022-08-17 13:05:23 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 13:05:36 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_brasiliense_F157.fna 2022-08-17 13:05:36 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 13:05:36 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 13:05:36 2022-08-17 13:05:37 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 13:05:37 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 13:05:37 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 13:05:37 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 13:05:37 2022-08-17 13:05:45 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 13:05:45 INFO: Genetic code 11 selected as optimal 2022-08-17 13:05:45 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 13:05:45 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 13:05:45 2022-08-17 13:05:50 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 13:05:55 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 13:05:58 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 13:06:01 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 13:06:05 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 13:06:08 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 13:06:10 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 13:06:12 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 13:06:14 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 13:06:16 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 13:06:16 INFO: Results: C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 2022-08-17 13:06:16 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 | |438 Complete BUSCOs (C) | |436 Complete and single-copy BUSCOs (S) | |2 Complete and duplicated BUSCOs (D) | |1 Fragmented BUSCOs (F) | |1 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 13:06:16 INFO: BUSCO analysis done. Total running time: 41 seconds 2022-08-17 13:06:16 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_brasiliense_F157 2022-08-17 13:06:16 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 13:06:16 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 13:06:17 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 13:06:17 ***** 2022-08-17 13:06:17 INFO: Configuring BUSCO with local environment 2022-08-17 13:06:17 INFO: Mode is genome 2022-08-17 13:06:17 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 13:06:29 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_brasiliense_ICMP_19477_ICMP19477.fna 2022-08-17 13:06:30 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 13:06:30 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 13:06:30 2022-08-17 13:06:31 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 13:06:31 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 13:06:31 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 13:06:31 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 13:06:31 2022-08-17 13:06:39 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 13:06:39 INFO: Genetic code 11 selected as optimal 2022-08-17 13:06:39 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 13:06:39 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 13:06:39 2022-08-17 13:06:44 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 13:06:49 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 13:06:53 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 13:06:56 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 13:06:59 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 13:07:02 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 13:07:05 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 13:07:07 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 13:07:09 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 13:07:11 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 13:07:11 INFO: Results: C:99.6%[S:98.9%,D:0.7%],F:0.2%,M:0.2%,n:440 2022-08-17 13:07:11 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.6%[S:98.9%,D:0.7%],F:0.2%,M:0.2%,n:440 | |438 Complete BUSCOs (C) | |435 Complete and single-copy BUSCOs (S) | |3 Complete and duplicated BUSCOs (D) | |1 Fragmented BUSCOs (F) | |1 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 13:07:11 INFO: BUSCO analysis done. Total running time: 41 seconds 2022-08-17 13:07:11 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_brasiliense_ICMP_19477_ICMP19477 2022-08-17 13:07:11 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 13:07:11 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 13:07:11 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 13:07:11 ***** 2022-08-17 13:07:11 INFO: Configuring BUSCO with local environment 2022-08-17 13:07:11 INFO: Mode is genome 2022-08-17 13:07:11 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 13:07:24 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_brasiliense_IPO_0590.fna 2022-08-17 13:07:24 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 13:07:24 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 13:07:24 2022-08-17 13:07:25 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 13:07:25 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 13:07:25 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 13:07:25 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 13:07:25 2022-08-17 13:07:32 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 13:07:33 INFO: Genetic code 11 selected as optimal 2022-08-17 13:07:33 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 13:07:33 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 13:07:33 2022-08-17 13:07:38 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 13:07:42 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 13:07:46 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 13:07:49 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 13:07:52 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 13:07:55 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 13:07:58 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 13:08:00 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 13:08:02 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 13:08:04 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 13:08:04 INFO: Results: C:99.3%[S:99.1%,D:0.2%],F:0.5%,M:0.2%,n:440 2022-08-17 13:08:04 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.3%[S:99.1%,D:0.2%],F:0.5%,M:0.2%,n:440 | |437 Complete BUSCOs (C) | |436 Complete and single-copy BUSCOs (S) | |1 Complete and duplicated BUSCOs (D) | |2 Fragmented BUSCOs (F) | |1 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 13:08:04 INFO: BUSCO analysis done. Total running time: 40 seconds 2022-08-17 13:08:04 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_brasiliense_IPO_0590 2022-08-17 13:08:04 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 13:08:04 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 13:08:04 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 13:08:04 ***** 2022-08-17 13:08:04 INFO: Configuring BUSCO with local environment 2022-08-17 13:08:04 INFO: Mode is genome 2022-08-17 13:08:04 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 13:08:17 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_brasiliense_IPO_0821SCRI_133.fna 2022-08-17 13:08:17 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 13:08:17 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 13:08:17 2022-08-17 13:08:18 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 13:08:18 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 13:08:18 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 13:08:18 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 13:08:18 2022-08-17 13:08:26 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 13:08:26 INFO: Genetic code 11 selected as optimal 2022-08-17 13:08:26 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 13:08:26 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 13:08:26 2022-08-17 13:08:31 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 13:08:35 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 13:08:39 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 13:08:42 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 13:08:45 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 13:08:48 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 13:08:51 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 13:08:53 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 13:08:55 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 13:08:56 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 13:08:57 INFO: Results: C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 2022-08-17 13:08:57 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 | |438 Complete BUSCOs (C) | |436 Complete and single-copy BUSCOs (S) | |2 Complete and duplicated BUSCOs (D) | |1 Fragmented BUSCOs (F) | |1 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 13:08:57 INFO: BUSCO analysis done. Total running time: 40 seconds 2022-08-17 13:08:57 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_brasiliense_IPO_0821SCRI_133 2022-08-17 13:08:57 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 13:08:57 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 13:08:57 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 13:08:57 ***** 2022-08-17 13:08:57 INFO: Configuring BUSCO with local environment 2022-08-17 13:08:57 INFO: Mode is genome 2022-08-17 13:08:57 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 13:09:10 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_brasiliense_IPO_3540CFBP_6617ATCC_BAA-417IBSBF_1692.fna 2022-08-17 13:09:10 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 13:09:10 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 13:09:10 2022-08-17 13:09:11 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 13:09:11 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 13:09:11 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 13:09:11 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 13:09:11 2022-08-17 13:09:19 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 13:09:19 INFO: Genetic code 11 selected as optimal 2022-08-17 13:09:19 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 13:09:19 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 13:09:19 2022-08-17 13:09:24 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 13:09:28 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 13:09:31 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 13:09:35 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 13:09:38 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 13:09:41 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 13:09:43 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 13:09:45 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 13:09:47 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 13:09:49 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 13:09:49 INFO: Results: C:98.9%[S:97.5%,D:1.4%],F:0.7%,M:0.4%,n:440 2022-08-17 13:09:49 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:98.9%[S:97.5%,D:1.4%],F:0.7%,M:0.4%,n:440 | |435 Complete BUSCOs (C) | |429 Complete and single-copy BUSCOs (S) | |6 Complete and duplicated BUSCOs (D) | |3 Fragmented BUSCOs (F) | |2 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 13:09:49 INFO: BUSCO analysis done. Total running time: 39 seconds 2022-08-17 13:09:49 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_brasiliense_IPO_3540CFBP_6617ATCC_BAA-417IBSBF_1692 2022-08-17 13:09:49 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 13:09:49 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 13:09:50 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 13:09:50 ***** 2022-08-17 13:09:50 INFO: Configuring BUSCO with local environment 2022-08-17 13:09:50 INFO: Mode is genome 2022-08-17 13:09:50 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 13:10:02 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_brasiliense_IPO_3628.fna 2022-08-17 13:10:03 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 13:10:03 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 13:10:03 2022-08-17 13:10:04 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 13:10:04 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 13:10:04 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 13:10:04 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 13:10:04 2022-08-17 13:10:11 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 13:10:11 INFO: Genetic code 11 selected as optimal 2022-08-17 13:10:11 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 13:10:11 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 13:10:11 2022-08-17 13:10:17 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 13:10:21 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 13:10:25 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 13:10:28 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 13:10:31 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 13:10:34 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 13:10:37 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 13:10:39 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 13:10:41 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 13:10:43 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 13:10:43 INFO: Results: C:99.6%[S:98.9%,D:0.7%],F:0.2%,M:0.2%,n:440 2022-08-17 13:10:43 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.6%[S:98.9%,D:0.7%],F:0.2%,M:0.2%,n:440 | |438 Complete BUSCOs (C) | |435 Complete and single-copy BUSCOs (S) | |3 Complete and duplicated BUSCOs (D) | |1 Fragmented BUSCOs (F) | |1 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 13:10:43 INFO: BUSCO analysis done. Total running time: 40 seconds 2022-08-17 13:10:43 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_brasiliense_IPO_3628 2022-08-17 13:10:43 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 13:10:43 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 13:10:43 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 13:10:43 ***** 2022-08-17 13:10:43 INFO: Configuring BUSCO with local environment 2022-08-17 13:10:43 INFO: Mode is genome 2022-08-17 13:10:43 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 13:10:56 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_brasiliense_IPO_3630.fna 2022-08-17 13:10:56 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 13:10:56 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 13:10:56 2022-08-17 13:10:57 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 13:10:57 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 13:10:57 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 13:10:57 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 13:10:57 2022-08-17 13:11:05 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 13:11:06 INFO: Genetic code 11 selected as optimal 2022-08-17 13:11:06 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 13:11:06 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 13:11:06 2022-08-17 13:11:11 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 13:11:16 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 13:11:19 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 13:11:23 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 13:11:26 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 13:11:29 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 13:11:31 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 13:11:33 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 13:11:35 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 13:11:37 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 13:11:37 INFO: Results: C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 2022-08-17 13:11:37 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 | |438 Complete BUSCOs (C) | |436 Complete and single-copy BUSCOs (S) | |2 Complete and duplicated BUSCOs (D) | |1 Fragmented BUSCOs (F) | |1 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 13:11:37 INFO: BUSCO analysis done. Total running time: 41 seconds 2022-08-17 13:11:37 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_brasiliense_IPO_3630 2022-08-17 13:11:37 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 13:11:37 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 13:11:38 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 13:11:38 ***** 2022-08-17 13:11:38 INFO: Configuring BUSCO with local environment 2022-08-17 13:11:38 INFO: Mode is genome 2022-08-17 13:11:38 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 13:11:50 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_brasiliense_IPO_3643.fna 2022-08-17 13:11:51 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 13:11:51 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 13:11:51 2022-08-17 13:11:52 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 13:11:52 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 13:11:52 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 13:11:52 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 13:11:52 2022-08-17 13:11:59 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 13:12:00 INFO: Genetic code 11 selected as optimal 2022-08-17 13:12:00 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 13:12:00 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 13:12:00 2022-08-17 13:12:05 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 13:12:10 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 13:12:13 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 13:12:16 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 13:12:19 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 13:12:22 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 13:12:25 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 13:12:27 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 13:12:29 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 13:12:31 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 13:12:31 INFO: Results: C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 2022-08-17 13:12:31 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 | |438 Complete BUSCOs (C) | |436 Complete and single-copy BUSCOs (S) | |2 Complete and duplicated BUSCOs (D) | |1 Fragmented BUSCOs (F) | |1 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 13:12:31 INFO: BUSCO analysis done. Total running time: 40 seconds 2022-08-17 13:12:31 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_brasiliense_IPO_3643 2022-08-17 13:12:31 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 13:12:31 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 13:12:31 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 13:12:31 ***** 2022-08-17 13:12:31 INFO: Configuring BUSCO with local environment 2022-08-17 13:12:31 INFO: Mode is genome 2022-08-17 13:12:31 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 13:12:44 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_brasiliense_IPO_3644.fna 2022-08-17 13:12:44 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 13:12:44 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 13:12:44 2022-08-17 13:12:45 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 13:12:45 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 13:12:45 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 13:12:45 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 13:12:45 2022-08-17 13:12:52 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 13:12:52 INFO: Genetic code 11 selected as optimal 2022-08-17 13:12:52 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 13:12:52 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 13:12:52 2022-08-17 13:12:58 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 13:13:02 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 13:13:06 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 13:13:09 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 13:13:12 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 13:13:15 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 13:13:18 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 13:13:20 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 13:13:22 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 13:13:23 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 13:13:24 INFO: Results: C:96.9%[S:96.4%,D:0.5%],F:2.7%,M:0.4%,n:440 2022-08-17 13:13:24 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:96.9%[S:96.4%,D:0.5%],F:2.7%,M:0.4%,n:440 | |426 Complete BUSCOs (C) | |424 Complete and single-copy BUSCOs (S) | |2 Complete and duplicated BUSCOs (D) | |12 Fragmented BUSCOs (F) | |2 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 13:13:24 INFO: BUSCO analysis done. Total running time: 40 seconds 2022-08-17 13:13:24 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_brasiliense_IPO_3644 2022-08-17 13:13:24 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 13:13:24 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 13:13:24 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 13:13:24 ***** 2022-08-17 13:13:24 INFO: Configuring BUSCO with local environment 2022-08-17 13:13:24 INFO: Mode is genome 2022-08-17 13:13:24 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 13:13:37 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_brasiliense_IPO_3649NAK_375.fna 2022-08-17 13:13:37 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 13:13:37 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 13:13:37 2022-08-17 13:13:38 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 13:13:38 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 13:13:38 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 13:13:38 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 13:13:38 2022-08-17 13:13:47 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 13:13:47 INFO: Genetic code 11 selected as optimal 2022-08-17 13:13:47 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 13:13:47 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 13:13:47 2022-08-17 13:13:53 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 13:13:57 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 13:14:01 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 13:14:05 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 13:14:08 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 13:14:10 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 13:14:13 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 13:14:15 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 13:14:17 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 13:14:19 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 13:14:19 INFO: Results: C:99.6%[S:98.9%,D:0.7%],F:0.2%,M:0.2%,n:440 2022-08-17 13:14:19 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.6%[S:98.9%,D:0.7%],F:0.2%,M:0.2%,n:440 | |438 Complete BUSCOs (C) | |435 Complete and single-copy BUSCOs (S) | |3 Complete and duplicated BUSCOs (D) | |1 Fragmented BUSCOs (F) | |1 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 13:14:19 INFO: BUSCO analysis done. Total running time: 42 seconds 2022-08-17 13:14:19 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_brasiliense_IPO_3649NAK_375 2022-08-17 13:14:19 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 13:14:19 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 13:14:20 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 13:14:20 ***** 2022-08-17 13:14:20 INFO: Configuring BUSCO with local environment 2022-08-17 13:14:20 INFO: Mode is genome 2022-08-17 13:14:20 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 13:14:32 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_brasiliense_IPO_3649NAK_55.fna 2022-08-17 13:14:32 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 13:14:32 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 13:14:32 2022-08-17 13:14:33 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 13:14:33 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 13:14:33 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 13:14:33 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 13:14:33 2022-08-17 13:14:41 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 13:14:41 INFO: Genetic code 11 selected as optimal 2022-08-17 13:14:41 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 13:14:41 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 13:14:41 2022-08-17 13:14:47 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 13:14:51 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 13:14:55 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 13:14:58 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 13:15:02 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 13:15:04 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 13:15:07 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 13:15:09 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 13:15:11 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 13:15:13 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 13:15:13 INFO: Results: C:99.5%[S:99.3%,D:0.2%],F:0.2%,M:0.3%,n:440 2022-08-17 13:15:13 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.5%[S:99.3%,D:0.2%],F:0.2%,M:0.3%,n:440 | |438 Complete BUSCOs (C) | |437 Complete and single-copy BUSCOs (S) | |1 Complete and duplicated BUSCOs (D) | |1 Fragmented BUSCOs (F) | |1 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 13:15:13 INFO: BUSCO analysis done. Total running time: 41 seconds 2022-08-17 13:15:13 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_brasiliense_IPO_3649NAK_55 2022-08-17 13:15:13 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 13:15:13 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 13:15:14 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 13:15:14 ***** 2022-08-17 13:15:14 INFO: Configuring BUSCO with local environment 2022-08-17 13:15:14 INFO: Mode is genome 2022-08-17 13:15:14 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 13:15:26 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_brasiliense_IPO_3650NAK_376.fna 2022-08-17 13:15:27 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 13:15:27 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 13:15:27 2022-08-17 13:15:28 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 13:15:28 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 13:15:28 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 13:15:28 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 13:15:28 2022-08-17 13:15:36 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 13:15:36 INFO: Genetic code 11 selected as optimal 2022-08-17 13:15:36 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 13:15:36 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 13:15:36 2022-08-17 13:15:41 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 13:15:45 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 13:15:48 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 13:15:52 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 13:15:55 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 13:15:58 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 13:16:01 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 13:16:03 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 13:16:05 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 13:16:06 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 13:16:07 INFO: Results: C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 2022-08-17 13:16:07 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 | |438 Complete BUSCOs (C) | |436 Complete and single-copy BUSCOs (S) | |2 Complete and duplicated BUSCOs (D) | |1 Fragmented BUSCOs (F) | |1 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 13:16:07 INFO: BUSCO analysis done. Total running time: 40 seconds 2022-08-17 13:16:07 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_brasiliense_IPO_3650NAK_376 2022-08-17 13:16:07 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 13:16:07 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 13:16:07 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 13:16:07 ***** 2022-08-17 13:16:07 INFO: Configuring BUSCO with local environment 2022-08-17 13:16:07 INFO: Mode is genome 2022-08-17 13:16:07 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 13:16:20 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_brasiliense_IPO_3707NAK_37777a.fna 2022-08-17 13:16:20 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 13:16:20 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 13:16:20 2022-08-17 13:16:21 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 13:16:21 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 13:16:21 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 13:16:21 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 13:16:21 2022-08-17 13:16:29 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 13:16:29 INFO: Genetic code 11 selected as optimal 2022-08-17 13:16:29 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 13:16:29 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 13:16:29 2022-08-17 13:16:35 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 13:16:39 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 13:16:43 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 13:16:46 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 13:16:49 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 13:16:52 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 13:16:55 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 13:16:57 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 13:16:59 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 13:17:01 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 13:17:01 INFO: Results: C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 2022-08-17 13:17:01 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 | |438 Complete BUSCOs (C) | |436 Complete and single-copy BUSCOs (S) | |2 Complete and duplicated BUSCOs (D) | |1 Fragmented BUSCOs (F) | |1 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 13:17:01 INFO: BUSCO analysis done. Total running time: 41 seconds 2022-08-17 13:17:01 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_brasiliense_IPO_3707NAK_37777a 2022-08-17 13:17:01 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 13:17:01 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 13:17:02 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 13:17:02 ***** 2022-08-17 13:17:02 INFO: Configuring BUSCO with local environment 2022-08-17 13:17:02 INFO: Mode is genome 2022-08-17 13:17:02 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 13:17:14 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_brasiliense_IPO_3708NAK_37899a.fna 2022-08-17 13:17:15 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 13:17:15 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 13:17:15 2022-08-17 13:17:15 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 13:17:15 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 13:17:15 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 13:17:15 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 13:17:15 2022-08-17 13:17:23 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 13:17:23 INFO: Genetic code 11 selected as optimal 2022-08-17 13:17:23 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 13:17:23 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 13:17:23 2022-08-17 13:17:29 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 13:17:33 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 13:17:36 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 13:17:40 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 13:17:43 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 13:17:46 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 13:17:49 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 13:17:51 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 13:17:53 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 13:17:55 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 13:17:55 INFO: Results: C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 2022-08-17 13:17:55 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 | |438 Complete BUSCOs (C) | |436 Complete and single-copy BUSCOs (S) | |2 Complete and duplicated BUSCOs (D) | |1 Fragmented BUSCOs (F) | |1 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 13:17:55 INFO: BUSCO analysis done. Total running time: 41 seconds 2022-08-17 13:17:55 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_brasiliense_IPO_3708NAK_37899a 2022-08-17 13:17:55 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 13:17:55 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 13:17:56 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 13:17:56 ***** 2022-08-17 13:17:56 INFO: Configuring BUSCO with local environment 2022-08-17 13:17:56 INFO: Mode is genome 2022-08-17 13:17:56 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 13:18:08 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_brasiliense_IPO_3709NAK_379112-1c.fna 2022-08-17 13:18:08 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 13:18:08 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 13:18:08 2022-08-17 13:18:09 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 13:18:10 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 13:18:10 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 13:18:10 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 13:18:10 2022-08-17 13:18:17 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 13:18:18 INFO: Genetic code 11 selected as optimal 2022-08-17 13:18:18 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 13:18:18 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 13:18:18 2022-08-17 13:18:23 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 13:18:28 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 13:18:31 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 13:18:35 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 13:18:38 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 13:18:41 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 13:18:44 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 13:18:46 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 13:18:48 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 13:18:50 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 13:18:50 INFO: Results: C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 2022-08-17 13:18:50 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 | |438 Complete BUSCOs (C) | |436 Complete and single-copy BUSCOs (S) | |2 Complete and duplicated BUSCOs (D) | |1 Fragmented BUSCOs (F) | |1 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 13:18:50 INFO: BUSCO analysis done. Total running time: 42 seconds 2022-08-17 13:18:50 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_brasiliense_IPO_3709NAK_379112-1c 2022-08-17 13:18:50 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 13:18:50 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 13:18:51 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 13:18:51 ***** 2022-08-17 13:18:51 INFO: Configuring BUSCO with local environment 2022-08-17 13:18:51 INFO: Mode is genome 2022-08-17 13:18:51 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 13:19:03 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_brasiliense_IPO_3710NAK_380.fna 2022-08-17 13:19:03 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 13:19:03 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 13:19:03 2022-08-17 13:19:04 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 13:19:04 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 13:19:04 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 13:19:04 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 13:19:04 2022-08-17 13:19:13 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 13:19:13 INFO: Genetic code 11 selected as optimal 2022-08-17 13:19:13 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 13:19:13 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 13:19:13 2022-08-17 13:19:19 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 13:19:24 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 13:19:27 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 13:19:31 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 13:19:34 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 13:19:37 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 13:19:39 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 13:19:41 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 13:19:44 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 13:19:45 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 13:19:45 INFO: Results: C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 2022-08-17 13:19:46 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 | |438 Complete BUSCOs (C) | |436 Complete and single-copy BUSCOs (S) | |2 Complete and duplicated BUSCOs (D) | |1 Fragmented BUSCOs (F) | |1 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 13:19:46 INFO: BUSCO analysis done. Total running time: 42 seconds 2022-08-17 13:19:46 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_brasiliense_IPO_3710NAK_380 2022-08-17 13:19:46 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 13:19:46 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 13:19:46 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 13:19:46 ***** 2022-08-17 13:19:46 INFO: Configuring BUSCO with local environment 2022-08-17 13:19:46 INFO: Mode is genome 2022-08-17 13:19:46 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 13:19:59 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_brasiliense_IPO_3711NAK_381.fna 2022-08-17 13:19:59 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 13:19:59 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 13:19:59 2022-08-17 13:20:00 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 13:20:00 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 13:20:00 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 13:20:00 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 13:20:00 2022-08-17 13:20:08 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 13:20:08 INFO: Genetic code 11 selected as optimal 2022-08-17 13:20:08 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 13:20:08 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 13:20:08 2022-08-17 13:20:14 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 13:20:18 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 13:20:22 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 13:20:25 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 13:20:29 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 13:20:31 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 13:20:34 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 13:20:36 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 13:20:38 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 13:20:40 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 13:20:40 INFO: Results: C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 2022-08-17 13:20:40 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 | |438 Complete BUSCOs (C) | |436 Complete and single-copy BUSCOs (S) | |2 Complete and duplicated BUSCOs (D) | |1 Fragmented BUSCOs (F) | |1 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 13:20:40 INFO: BUSCO analysis done. Total running time: 41 seconds 2022-08-17 13:20:40 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_brasiliense_IPO_3711NAK_381 2022-08-17 13:20:40 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 13:20:40 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 13:20:41 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 13:20:41 ***** 2022-08-17 13:20:41 INFO: Configuring BUSCO with local environment 2022-08-17 13:20:41 INFO: Mode is genome 2022-08-17 13:20:41 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 13:20:53 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_brasiliense_IPO_3843JGAR_11.fna 2022-08-17 13:20:54 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 13:20:54 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 13:20:54 2022-08-17 13:20:54 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 13:20:54 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 13:20:54 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 13:20:54 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 13:20:54 2022-08-17 13:21:02 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 13:21:02 INFO: Genetic code 11 selected as optimal 2022-08-17 13:21:02 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 13:21:02 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 13:21:02 2022-08-17 13:21:08 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 13:21:12 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 13:21:16 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 13:21:19 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 13:21:23 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 13:21:26 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 13:21:28 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 13:21:30 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 13:21:32 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 13:21:34 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 13:21:34 INFO: Results: C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 2022-08-17 13:21:34 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 | |438 Complete BUSCOs (C) | |436 Complete and single-copy BUSCOs (S) | |2 Complete and duplicated BUSCOs (D) | |1 Fragmented BUSCOs (F) | |1 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 13:21:34 INFO: BUSCO analysis done. Total running time: 41 seconds 2022-08-17 13:21:34 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_brasiliense_IPO_3843JGAR_11 2022-08-17 13:21:34 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 13:21:34 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 13:21:35 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 13:21:35 ***** 2022-08-17 13:21:35 INFO: Configuring BUSCO with local environment 2022-08-17 13:21:35 INFO: Mode is genome 2022-08-17 13:21:35 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 13:21:47 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_brasiliense_IPO_3844NAK_382JGAR_12.fna 2022-08-17 13:21:48 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 13:21:48 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 13:21:48 2022-08-17 13:21:49 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 13:21:49 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 13:21:49 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 13:21:49 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 13:21:49 2022-08-17 13:21:57 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 13:21:57 INFO: Genetic code 11 selected as optimal 2022-08-17 13:21:57 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 13:21:57 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 13:21:57 2022-08-17 13:22:02 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 13:22:07 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 13:22:10 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 13:22:14 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 13:22:17 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 13:22:20 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 13:22:22 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 13:22:24 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 13:22:26 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 13:22:28 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 13:22:28 INFO: Results: C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 2022-08-17 13:22:28 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 | |438 Complete BUSCOs (C) | |436 Complete and single-copy BUSCOs (S) | |2 Complete and duplicated BUSCOs (D) | |1 Fragmented BUSCOs (F) | |1 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 13:22:28 INFO: BUSCO analysis done. Total running time: 41 seconds 2022-08-17 13:22:28 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_brasiliense_IPO_3844NAK_382JGAR_12 2022-08-17 13:22:28 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 13:22:28 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 13:22:29 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 13:22:29 ***** 2022-08-17 13:22:29 INFO: Configuring BUSCO with local environment 2022-08-17 13:22:29 INFO: Mode is genome 2022-08-17 13:22:29 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 13:22:42 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_brasiliense_IPO_4055NAK_152GBBC_1819.fna 2022-08-17 13:22:42 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 13:22:42 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 13:22:42 2022-08-17 13:22:43 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 13:22:43 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 13:22:43 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 13:22:43 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 13:22:43 2022-08-17 13:22:51 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 13:22:51 INFO: Genetic code 11 selected as optimal 2022-08-17 13:22:51 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 13:22:51 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 13:22:51 2022-08-17 13:22:57 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 13:23:01 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 13:23:04 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 13:23:08 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 13:23:11 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 13:23:14 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 13:23:16 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 13:23:19 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 13:23:21 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 13:23:22 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 13:23:23 INFO: Results: C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 2022-08-17 13:23:23 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 | |438 Complete BUSCOs (C) | |436 Complete and single-copy BUSCOs (S) | |2 Complete and duplicated BUSCOs (D) | |1 Fragmented BUSCOs (F) | |1 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 13:23:23 INFO: BUSCO analysis done. Total running time: 41 seconds 2022-08-17 13:23:23 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_brasiliense_IPO_4055NAK_152GBBC_1819 2022-08-17 13:23:23 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 13:23:23 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 13:23:23 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 13:23:23 ***** 2022-08-17 13:23:23 INFO: Configuring BUSCO with local environment 2022-08-17 13:23:23 INFO: Mode is genome 2022-08-17 13:23:23 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 13:23:36 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_brasiliense_IPO_4056NAK_264GBBC_1756.fna 2022-08-17 13:23:36 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 13:23:36 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 13:23:36 2022-08-17 13:23:37 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 13:23:37 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 13:23:37 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 13:23:37 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 13:23:37 2022-08-17 13:23:45 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 13:23:45 INFO: Genetic code 11 selected as optimal 2022-08-17 13:23:45 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 13:23:45 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 13:23:45 2022-08-17 13:23:50 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 13:23:55 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 13:23:58 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 13:24:02 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 13:24:05 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 13:24:07 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 13:24:10 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 13:24:12 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 13:24:14 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 13:24:16 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 13:24:16 INFO: Results: C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 2022-08-17 13:24:16 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 | |438 Complete BUSCOs (C) | |436 Complete and single-copy BUSCOs (S) | |2 Complete and duplicated BUSCOs (D) | |1 Fragmented BUSCOs (F) | |1 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 13:24:16 INFO: BUSCO analysis done. Total running time: 40 seconds 2022-08-17 13:24:16 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_brasiliense_IPO_4056NAK_264GBBC_1756 2022-08-17 13:24:16 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 13:24:16 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 13:24:17 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 13:24:17 ***** 2022-08-17 13:24:17 INFO: Configuring BUSCO with local environment 2022-08-17 13:24:17 INFO: Mode is genome 2022-08-17 13:24:17 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 13:24:29 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_brasiliense_IPO_4057NAK_249.fna 2022-08-17 13:24:29 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 13:24:29 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 13:24:29 2022-08-17 13:24:30 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 13:24:30 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 13:24:30 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 13:24:30 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 13:24:30 2022-08-17 13:24:40 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 13:24:40 INFO: Genetic code 11 selected as optimal 2022-08-17 13:24:40 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 13:24:40 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 13:24:40 2022-08-17 13:24:45 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 13:24:50 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 13:24:53 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 13:24:57 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 13:25:00 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 13:25:03 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 13:25:06 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 13:25:08 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 13:25:10 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 13:25:12 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 13:25:12 INFO: Results: C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 2022-08-17 13:25:12 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 | |438 Complete BUSCOs (C) | |436 Complete and single-copy BUSCOs (S) | |2 Complete and duplicated BUSCOs (D) | |1 Fragmented BUSCOs (F) | |1 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 13:25:12 INFO: BUSCO analysis done. Total running time: 43 seconds 2022-08-17 13:25:12 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_brasiliense_IPO_4057NAK_249 2022-08-17 13:25:12 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 13:25:12 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 13:25:12 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 13:25:12 ***** 2022-08-17 13:25:12 INFO: Configuring BUSCO with local environment 2022-08-17 13:25:12 INFO: Mode is genome 2022-08-17 13:25:12 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 13:25:25 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_brasiliense_IPO_4058NAK_235.fna 2022-08-17 13:25:25 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 13:25:25 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 13:25:25 2022-08-17 13:25:26 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 13:25:26 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 13:25:26 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 13:25:26 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 13:25:26 2022-08-17 13:25:34 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 13:25:34 INFO: Genetic code 11 selected as optimal 2022-08-17 13:25:34 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 13:25:34 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 13:25:34 2022-08-17 13:25:39 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 13:25:44 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 13:25:47 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 13:25:50 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 13:25:54 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 13:25:56 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 13:25:59 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 13:26:01 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 13:26:03 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 13:26:05 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 13:26:05 INFO: Results: C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 2022-08-17 13:26:05 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 | |438 Complete BUSCOs (C) | |436 Complete and single-copy BUSCOs (S) | |2 Complete and duplicated BUSCOs (D) | |1 Fragmented BUSCOs (F) | |1 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 13:26:05 INFO: BUSCO analysis done. Total running time: 40 seconds 2022-08-17 13:26:05 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_brasiliense_IPO_4058NAK_235 2022-08-17 13:26:05 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 13:26:05 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 13:26:06 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 13:26:06 ***** 2022-08-17 13:26:06 INFO: Configuring BUSCO with local environment 2022-08-17 13:26:06 INFO: Mode is genome 2022-08-17 13:26:06 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 13:26:18 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_brasiliense_IPO_4060NAK_251.fna 2022-08-17 13:26:18 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 13:26:18 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 13:26:18 2022-08-17 13:26:19 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 13:26:19 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 13:26:19 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 13:26:19 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 13:26:19 2022-08-17 13:26:29 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 13:26:30 INFO: Genetic code 11 selected as optimal 2022-08-17 13:26:30 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 13:26:30 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 13:26:30 2022-08-17 13:26:34 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 13:26:39 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 13:26:42 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 13:26:46 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 13:26:49 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 13:26:52 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 13:26:55 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 13:26:57 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 13:26:59 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 13:27:01 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 13:27:01 INFO: Results: C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 2022-08-17 13:27:01 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 | |438 Complete BUSCOs (C) | |436 Complete and single-copy BUSCOs (S) | |2 Complete and duplicated BUSCOs (D) | |1 Fragmented BUSCOs (F) | |1 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 13:27:01 INFO: BUSCO analysis done. Total running time: 43 seconds 2022-08-17 13:27:01 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_brasiliense_IPO_4060NAK_251 2022-08-17 13:27:01 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 13:27:01 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 13:27:02 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 13:27:02 ***** 2022-08-17 13:27:02 INFO: Configuring BUSCO with local environment 2022-08-17 13:27:02 INFO: Mode is genome 2022-08-17 13:27:02 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 13:27:14 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_brasiliense_IPO_4062NAK_237.fna 2022-08-17 13:27:14 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 13:27:14 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 13:27:14 2022-08-17 13:27:15 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 13:27:15 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 13:27:15 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 13:27:15 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 13:27:15 2022-08-17 13:27:23 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 13:27:23 INFO: Genetic code 11 selected as optimal 2022-08-17 13:27:23 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 13:27:23 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 13:27:23 2022-08-17 13:27:29 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 13:27:33 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 13:27:36 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 13:27:40 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 13:27:43 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 13:27:46 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 13:27:49 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 13:27:51 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 13:27:53 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 13:27:55 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 13:27:55 INFO: Results: C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 2022-08-17 13:27:55 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 | |438 Complete BUSCOs (C) | |436 Complete and single-copy BUSCOs (S) | |2 Complete and duplicated BUSCOs (D) | |1 Fragmented BUSCOs (F) | |1 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 13:27:55 INFO: BUSCO analysis done. Total running time: 41 seconds 2022-08-17 13:27:55 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_brasiliense_IPO_4062NAK_237 2022-08-17 13:27:55 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 13:27:55 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 13:27:55 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 13:27:55 ***** 2022-08-17 13:27:55 INFO: Configuring BUSCO with local environment 2022-08-17 13:27:55 INFO: Mode is genome 2022-08-17 13:27:55 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 13:28:08 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_brasiliense_IPO_4064NAK_242.fna 2022-08-17 13:28:08 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 13:28:08 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 13:28:08 2022-08-17 13:28:09 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 13:28:09 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 13:28:09 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 13:28:09 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 13:28:09 2022-08-17 13:28:18 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 13:28:18 INFO: Genetic code 11 selected as optimal 2022-08-17 13:28:18 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 13:28:18 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 13:28:18 2022-08-17 13:28:23 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 13:28:27 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 13:28:30 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 13:28:34 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 13:28:37 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 13:28:40 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 13:28:43 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 13:28:45 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 13:28:47 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 13:28:49 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 13:28:49 INFO: Results: C:99.6%[S:98.2%,D:1.4%],F:0.2%,M:0.2%,n:440 2022-08-17 13:28:49 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.6%[S:98.2%,D:1.4%],F:0.2%,M:0.2%,n:440 | |438 Complete BUSCOs (C) | |432 Complete and single-copy BUSCOs (S) | |6 Complete and duplicated BUSCOs (D) | |1 Fragmented BUSCOs (F) | |1 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 13:28:49 INFO: BUSCO analysis done. Total running time: 41 seconds 2022-08-17 13:28:49 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_brasiliense_IPO_4064NAK_242 2022-08-17 13:28:49 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 13:28:49 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 13:28:50 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 13:28:50 ***** 2022-08-17 13:28:50 INFO: Configuring BUSCO with local environment 2022-08-17 13:28:50 INFO: Mode is genome 2022-08-17 13:28:50 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 13:29:02 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_brasiliense_IPO_4065NAK_223.fna 2022-08-17 13:29:02 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 13:29:02 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 13:29:02 2022-08-17 13:29:03 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 13:29:03 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 13:29:03 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 13:29:03 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 13:29:03 2022-08-17 13:29:12 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 13:29:12 INFO: Genetic code 11 selected as optimal 2022-08-17 13:29:12 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 13:29:12 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 13:29:12 2022-08-17 13:29:17 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 13:29:22 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 13:29:26 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 13:29:29 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 13:29:32 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 13:29:35 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 13:29:38 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 13:29:40 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 13:29:42 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 13:29:44 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 13:29:44 INFO: Results: C:99.4%[S:98.9%,D:0.5%],F:0.5%,M:0.1%,n:440 2022-08-17 13:29:44 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.4%[S:98.9%,D:0.5%],F:0.5%,M:0.1%,n:440 | |437 Complete BUSCOs (C) | |435 Complete and single-copy BUSCOs (S) | |2 Complete and duplicated BUSCOs (D) | |2 Fragmented BUSCOs (F) | |1 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 13:29:44 INFO: BUSCO analysis done. Total running time: 42 seconds 2022-08-17 13:29:44 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_brasiliense_IPO_4065NAK_223 2022-08-17 13:29:44 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 13:29:44 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 13:29:45 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 13:29:45 ***** 2022-08-17 13:29:45 INFO: Configuring BUSCO with local environment 2022-08-17 13:29:45 INFO: Mode is genome 2022-08-17 13:29:45 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 13:29:57 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_brasiliense_IPO_4066NAK_259.fna 2022-08-17 13:29:58 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 13:29:58 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 13:29:58 2022-08-17 13:29:58 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 13:29:59 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 13:29:59 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 13:29:59 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 13:29:59 2022-08-17 13:30:07 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 13:30:07 INFO: Genetic code 11 selected as optimal 2022-08-17 13:30:07 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 13:30:07 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 13:30:07 2022-08-17 13:30:12 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 13:30:16 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 13:30:20 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 13:30:23 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 13:30:26 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 13:30:29 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 13:30:32 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 13:30:34 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 13:30:36 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 13:30:38 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 13:30:38 INFO: Results: C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 2022-08-17 13:30:38 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 | |438 Complete BUSCOs (C) | |436 Complete and single-copy BUSCOs (S) | |2 Complete and duplicated BUSCOs (D) | |1 Fragmented BUSCOs (F) | |1 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 13:30:38 INFO: BUSCO analysis done. Total running time: 40 seconds 2022-08-17 13:30:38 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_brasiliense_IPO_4066NAK_259 2022-08-17 13:30:38 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 13:30:38 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 13:30:38 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 13:30:38 ***** 2022-08-17 13:30:38 INFO: Configuring BUSCO with local environment 2022-08-17 13:30:38 INFO: Mode is genome 2022-08-17 13:30:38 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 13:30:51 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_brasiliense_IPO_4067NAK_257.fna 2022-08-17 13:30:51 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 13:30:51 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 13:30:51 2022-08-17 13:30:52 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 13:30:52 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 13:30:52 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 13:30:52 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 13:30:52 2022-08-17 13:31:00 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 13:31:00 INFO: Genetic code 11 selected as optimal 2022-08-17 13:31:00 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 13:31:00 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 13:31:00 2022-08-17 13:31:05 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 13:31:10 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 13:31:13 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 13:31:17 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 13:31:20 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 13:31:23 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 13:31:25 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 13:31:27 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 13:31:29 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 13:31:31 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 13:31:31 INFO: Results: C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 2022-08-17 13:31:31 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 | |438 Complete BUSCOs (C) | |436 Complete and single-copy BUSCOs (S) | |2 Complete and duplicated BUSCOs (D) | |1 Fragmented BUSCOs (F) | |1 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 13:31:31 INFO: BUSCO analysis done. Total running time: 40 seconds 2022-08-17 13:31:31 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_brasiliense_IPO_4067NAK_257 2022-08-17 13:31:31 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 13:31:31 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 13:31:32 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 13:31:32 ***** 2022-08-17 13:31:32 INFO: Configuring BUSCO with local environment 2022-08-17 13:31:32 INFO: Mode is genome 2022-08-17 13:31:32 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 13:31:45 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_brasiliense_IPO_4068NAK_256.fna 2022-08-17 13:31:45 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 13:31:45 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 13:31:45 2022-08-17 13:31:46 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 13:31:46 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 13:31:46 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 13:31:46 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 13:31:46 2022-08-17 13:31:53 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 13:31:54 INFO: Genetic code 11 selected as optimal 2022-08-17 13:31:54 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 13:31:54 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 13:31:54 2022-08-17 13:31:58 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 13:32:02 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 13:32:06 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 13:32:09 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 13:32:13 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 13:32:15 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 13:32:18 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 13:32:20 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 13:32:22 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 13:32:23 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 13:32:24 INFO: Results: C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 2022-08-17 13:32:24 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 | |438 Complete BUSCOs (C) | |436 Complete and single-copy BUSCOs (S) | |2 Complete and duplicated BUSCOs (D) | |1 Fragmented BUSCOs (F) | |1 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 13:32:24 INFO: BUSCO analysis done. Total running time: 39 seconds 2022-08-17 13:32:24 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_brasiliense_IPO_4068NAK_256 2022-08-17 13:32:24 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 13:32:24 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 13:32:24 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 13:32:24 ***** 2022-08-17 13:32:24 INFO: Configuring BUSCO with local environment 2022-08-17 13:32:24 INFO: Mode is genome 2022-08-17 13:32:24 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 13:32:37 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_brasiliense_IPO_4071NAK_240.fna 2022-08-17 13:32:37 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 13:32:37 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 13:32:37 2022-08-17 13:32:38 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 13:32:38 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 13:32:38 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 13:32:38 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 13:32:38 2022-08-17 13:32:46 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 13:32:47 INFO: Genetic code 11 selected as optimal 2022-08-17 13:32:47 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 13:32:47 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 13:32:47 2022-08-17 13:32:52 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 13:32:56 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 13:33:00 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 13:33:03 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 13:33:07 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 13:33:09 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 13:33:12 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 13:33:14 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 13:33:16 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 13:33:18 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 13:33:18 INFO: Results: C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 2022-08-17 13:33:18 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 | |438 Complete BUSCOs (C) | |436 Complete and single-copy BUSCOs (S) | |2 Complete and duplicated BUSCOs (D) | |1 Fragmented BUSCOs (F) | |1 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 13:33:18 INFO: BUSCO analysis done. Total running time: 41 seconds 2022-08-17 13:33:18 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_brasiliense_IPO_4071NAK_240 2022-08-17 13:33:18 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 13:33:18 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 13:33:19 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 13:33:19 ***** 2022-08-17 13:33:19 INFO: Configuring BUSCO with local environment 2022-08-17 13:33:19 INFO: Mode is genome 2022-08-17 13:33:19 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 13:33:31 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_brasiliense_IPO_4073NAK_248.fna 2022-08-17 13:33:32 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 13:33:32 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 13:33:32 2022-08-17 13:33:33 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 13:33:33 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 13:33:33 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 13:33:33 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 13:33:33 2022-08-17 13:33:40 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 13:33:41 INFO: Genetic code 11 selected as optimal 2022-08-17 13:33:41 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 13:33:41 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 13:33:41 2022-08-17 13:33:46 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 13:33:51 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 13:33:54 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 13:33:58 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 13:34:01 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 13:34:04 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 13:34:07 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 13:34:09 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 13:34:11 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 13:34:13 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 13:34:13 INFO: Results: C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 2022-08-17 13:34:13 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 | |438 Complete BUSCOs (C) | |436 Complete and single-copy BUSCOs (S) | |2 Complete and duplicated BUSCOs (D) | |1 Fragmented BUSCOs (F) | |1 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 13:34:13 INFO: BUSCO analysis done. Total running time: 42 seconds 2022-08-17 13:34:13 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_brasiliense_IPO_4073NAK_248 2022-08-17 13:34:13 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 13:34:13 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 13:34:14 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 13:34:14 ***** 2022-08-17 13:34:14 INFO: Configuring BUSCO with local environment 2022-08-17 13:34:14 INFO: Mode is genome 2022-08-17 13:34:14 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 13:34:26 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_brasiliense_IPO_4131NAK_399JGAR_16180717-4.fna 2022-08-17 13:34:26 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 13:34:26 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 13:34:26 2022-08-17 13:34:27 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 13:34:27 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 13:34:27 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 13:34:27 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 13:34:27 2022-08-17 13:34:35 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 13:34:35 INFO: Genetic code 11 selected as optimal 2022-08-17 13:34:35 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 13:34:35 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 13:34:35 2022-08-17 13:34:41 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 13:34:45 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 13:34:49 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 13:34:52 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 13:34:55 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 13:34:58 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 13:35:01 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 13:35:03 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 13:35:05 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 13:35:07 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 13:35:07 INFO: Results: C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 2022-08-17 13:35:07 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 | |438 Complete BUSCOs (C) | |436 Complete and single-copy BUSCOs (S) | |2 Complete and duplicated BUSCOs (D) | |1 Fragmented BUSCOs (F) | |1 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 13:35:07 INFO: BUSCO analysis done. Total running time: 41 seconds 2022-08-17 13:35:07 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_brasiliense_IPO_4131NAK_399JGAR_16180717-4 2022-08-17 13:35:07 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 13:35:07 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 13:35:08 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 13:35:08 ***** 2022-08-17 13:35:08 INFO: Configuring BUSCO with local environment 2022-08-17 13:35:08 INFO: Mode is genome 2022-08-17 13:35:08 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 13:35:20 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_brasiliense_IPO_4132NAK_239.fna 2022-08-17 13:35:20 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 13:35:20 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 13:35:20 2022-08-17 13:35:21 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 13:35:21 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 13:35:21 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 13:35:21 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 13:35:21 2022-08-17 13:35:29 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 13:35:29 INFO: Genetic code 11 selected as optimal 2022-08-17 13:35:29 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 13:35:29 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 13:35:29 2022-08-17 13:35:34 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 13:35:38 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 13:35:42 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 13:35:45 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 13:35:48 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 13:35:51 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 13:35:54 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 13:35:56 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 13:35:58 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 13:36:00 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 13:36:00 INFO: Results: C:99.3%[S:97.7%,D:1.6%],F:0.2%,M:0.5%,n:440 2022-08-17 13:36:00 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.3%[S:97.7%,D:1.6%],F:0.2%,M:0.5%,n:440 | |437 Complete BUSCOs (C) | |430 Complete and single-copy BUSCOs (S) | |7 Complete and duplicated BUSCOs (D) | |1 Fragmented BUSCOs (F) | |2 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 13:36:00 INFO: BUSCO analysis done. Total running time: 40 seconds 2022-08-17 13:36:00 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_brasiliense_IPO_4132NAK_239 2022-08-17 13:36:00 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 13:36:00 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 13:36:01 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 13:36:01 ***** 2022-08-17 13:36:01 INFO: Configuring BUSCO with local environment 2022-08-17 13:36:01 INFO: Mode is genome 2022-08-17 13:36:01 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 13:36:13 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_brasiliense_IPO_4134NAK_395.fna 2022-08-17 13:36:13 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 13:36:13 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 13:36:13 2022-08-17 13:36:14 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 13:36:14 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 13:36:14 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 13:36:14 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 13:36:14 2022-08-17 13:36:24 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 13:36:24 INFO: Genetic code 11 selected as optimal 2022-08-17 13:36:24 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 13:36:24 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 13:36:24 2022-08-17 13:36:29 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 13:36:33 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 13:36:37 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 13:36:40 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 13:36:44 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 13:36:47 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 13:36:49 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 13:36:51 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 13:36:53 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 13:36:55 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 13:36:55 INFO: Results: C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 2022-08-17 13:36:55 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 | |438 Complete BUSCOs (C) | |436 Complete and single-copy BUSCOs (S) | |2 Complete and duplicated BUSCOs (D) | |1 Fragmented BUSCOs (F) | |1 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 13:36:55 INFO: BUSCO analysis done. Total running time: 42 seconds 2022-08-17 13:36:55 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_brasiliense_IPO_4134NAK_395 2022-08-17 13:36:55 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 13:36:55 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 13:36:56 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 13:36:56 ***** 2022-08-17 13:36:56 INFO: Configuring BUSCO with local environment 2022-08-17 13:36:56 INFO: Mode is genome 2022-08-17 13:36:56 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 13:37:08 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_brasiliense_IPO_4135NAK_383.fna 2022-08-17 13:37:09 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 13:37:09 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 13:37:09 2022-08-17 13:37:10 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 13:37:10 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 13:37:10 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 13:37:10 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 13:37:10 2022-08-17 13:37:18 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 13:37:18 INFO: Genetic code 11 selected as optimal 2022-08-17 13:37:18 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 13:37:18 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 13:37:18 2022-08-17 13:37:23 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 13:37:28 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 13:37:31 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 13:37:35 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 13:37:38 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 13:37:41 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 13:37:44 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 13:37:46 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 13:37:48 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 13:37:50 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 13:37:50 INFO: Results: C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 2022-08-17 13:37:50 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 | |438 Complete BUSCOs (C) | |436 Complete and single-copy BUSCOs (S) | |2 Complete and duplicated BUSCOs (D) | |1 Fragmented BUSCOs (F) | |1 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 13:37:50 INFO: BUSCO analysis done. Total running time: 41 seconds 2022-08-17 13:37:50 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_brasiliense_IPO_4135NAK_383 2022-08-17 13:37:50 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 13:37:50 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 13:37:50 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 13:37:50 ***** 2022-08-17 13:37:50 INFO: Configuring BUSCO with local environment 2022-08-17 13:37:50 INFO: Mode is genome 2022-08-17 13:37:50 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 13:38:03 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_brasiliense_LMG21371.fna 2022-08-17 13:38:03 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 13:38:03 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 13:38:03 2022-08-17 13:38:04 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 13:38:04 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 13:38:04 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 13:38:04 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 13:38:04 2022-08-17 13:38:12 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 13:38:12 INFO: Genetic code 11 selected as optimal 2022-08-17 13:38:12 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 13:38:12 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 13:38:12 2022-08-17 13:38:17 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 13:38:22 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 13:38:25 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 13:38:28 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 13:38:32 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 13:38:35 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 13:38:37 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 13:38:39 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 13:38:41 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 13:38:43 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 13:38:43 INFO: Results: C:99.6%[S:98.9%,D:0.7%],F:0.2%,M:0.2%,n:440 2022-08-17 13:38:43 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.6%[S:98.9%,D:0.7%],F:0.2%,M:0.2%,n:440 | |438 Complete BUSCOs (C) | |435 Complete and single-copy BUSCOs (S) | |3 Complete and duplicated BUSCOs (D) | |1 Fragmented BUSCOs (F) | |1 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 13:38:43 INFO: BUSCO analysis done. Total running time: 40 seconds 2022-08-17 13:38:43 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_brasiliense_LMG21371 2022-08-17 13:38:43 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 13:38:43 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 13:38:44 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 13:38:44 ***** 2022-08-17 13:38:44 INFO: Configuring BUSCO with local environment 2022-08-17 13:38:44 INFO: Mode is genome 2022-08-17 13:38:44 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 13:38:56 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_brasiliense_LMG21372.fna 2022-08-17 13:38:57 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 13:38:57 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 13:38:57 2022-08-17 13:38:58 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 13:38:58 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 13:38:58 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 13:38:58 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 13:38:58 2022-08-17 13:39:06 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 13:39:06 INFO: Genetic code 11 selected as optimal 2022-08-17 13:39:06 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 13:39:06 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 13:39:06 2022-08-17 13:39:11 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 13:39:16 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 13:39:19 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 13:39:23 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 13:39:26 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 13:39:29 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 13:39:31 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 13:39:33 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 13:39:35 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 13:39:37 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 13:39:37 INFO: Results: C:99.6%[S:98.9%,D:0.7%],F:0.2%,M:0.2%,n:440 2022-08-17 13:39:37 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.6%[S:98.9%,D:0.7%],F:0.2%,M:0.2%,n:440 | |438 Complete BUSCOs (C) | |435 Complete and single-copy BUSCOs (S) | |3 Complete and duplicated BUSCOs (D) | |1 Fragmented BUSCOs (F) | |1 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 13:39:37 INFO: BUSCO analysis done. Total running time: 41 seconds 2022-08-17 13:39:37 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_brasiliense_LMG21372 2022-08-17 13:39:37 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 13:39:37 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 13:39:38 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 13:39:38 ***** 2022-08-17 13:39:38 INFO: Configuring BUSCO with local environment 2022-08-17 13:39:38 INFO: Mode is genome 2022-08-17 13:39:38 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 13:39:51 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_brasiliense_NAK_241.fna 2022-08-17 13:39:51 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 13:39:51 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 13:39:51 2022-08-17 13:39:52 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 13:39:52 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 13:39:52 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 13:39:52 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 13:39:52 2022-08-17 13:40:00 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 13:40:00 INFO: Genetic code 11 selected as optimal 2022-08-17 13:40:00 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 13:40:00 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 13:40:00 2022-08-17 13:40:06 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 13:40:10 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 13:40:14 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 13:40:17 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 13:40:20 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 13:40:23 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 13:40:26 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 13:40:28 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 13:40:30 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 13:40:32 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 13:40:32 INFO: Results: C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 2022-08-17 13:40:32 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 | |438 Complete BUSCOs (C) | |436 Complete and single-copy BUSCOs (S) | |2 Complete and duplicated BUSCOs (D) | |1 Fragmented BUSCOs (F) | |1 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 13:40:32 INFO: BUSCO analysis done. Total running time: 42 seconds 2022-08-17 13:40:32 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_brasiliense_NAK_241 2022-08-17 13:40:32 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 13:40:32 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 13:40:33 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 13:40:33 ***** 2022-08-17 13:40:33 INFO: Configuring BUSCO with local environment 2022-08-17 13:40:33 INFO: Mode is genome 2022-08-17 13:40:33 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 13:40:45 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_brasiliense_NAK_243.fna 2022-08-17 13:40:46 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 13:40:46 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 13:40:46 2022-08-17 13:40:47 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 13:40:47 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 13:40:47 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 13:40:47 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 13:40:47 2022-08-17 13:40:55 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 13:40:55 INFO: Genetic code 11 selected as optimal 2022-08-17 13:40:55 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 13:40:55 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 13:40:55 2022-08-17 13:41:00 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 13:41:05 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 13:41:08 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 13:41:11 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 13:41:14 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 13:41:17 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 13:41:20 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 13:41:22 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 13:41:24 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 13:41:26 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 13:41:26 INFO: Results: C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 2022-08-17 13:41:26 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 | |438 Complete BUSCOs (C) | |436 Complete and single-copy BUSCOs (S) | |2 Complete and duplicated BUSCOs (D) | |1 Fragmented BUSCOs (F) | |1 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 13:41:26 INFO: BUSCO analysis done. Total running time: 41 seconds 2022-08-17 13:41:26 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_brasiliense_NAK_243 2022-08-17 13:41:26 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 13:41:26 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 13:41:27 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 13:41:27 ***** 2022-08-17 13:41:27 INFO: Configuring BUSCO with local environment 2022-08-17 13:41:27 INFO: Mode is genome 2022-08-17 13:41:27 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 13:41:39 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_brasiliense_NAK_245.fna 2022-08-17 13:41:40 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 13:41:40 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 13:41:40 2022-08-17 13:41:40 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 13:41:41 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 13:41:41 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 13:41:41 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 13:41:41 2022-08-17 13:41:48 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 13:41:48 INFO: Genetic code 11 selected as optimal 2022-08-17 13:41:48 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 13:41:48 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 13:41:48 2022-08-17 13:41:54 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 13:41:58 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 13:42:01 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 13:42:05 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 13:42:08 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 13:42:11 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 13:42:13 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 13:42:15 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 13:42:17 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 13:42:19 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 13:42:19 INFO: Results: C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 2022-08-17 13:42:19 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 | |438 Complete BUSCOs (C) | |436 Complete and single-copy BUSCOs (S) | |2 Complete and duplicated BUSCOs (D) | |1 Fragmented BUSCOs (F) | |1 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 13:42:19 INFO: BUSCO analysis done. Total running time: 40 seconds 2022-08-17 13:42:19 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_brasiliense_NAK_245 2022-08-17 13:42:19 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 13:42:19 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 13:42:20 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 13:42:20 ***** 2022-08-17 13:42:20 INFO: Configuring BUSCO with local environment 2022-08-17 13:42:20 INFO: Mode is genome 2022-08-17 13:42:20 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 13:42:32 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_brasiliense_NAK_247.fna 2022-08-17 13:42:33 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 13:42:33 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 13:42:33 2022-08-17 13:42:34 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 13:42:34 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 13:42:34 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 13:42:34 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 13:42:34 2022-08-17 13:42:42 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 13:42:42 INFO: Genetic code 11 selected as optimal 2022-08-17 13:42:42 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 13:42:42 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 13:42:42 2022-08-17 13:42:47 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 13:42:52 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 13:42:55 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 13:42:58 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 13:43:01 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 13:43:04 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 13:43:07 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 13:43:09 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 13:43:11 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 13:43:13 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 13:43:13 INFO: Results: C:99.6%[S:98.9%,D:0.7%],F:0.2%,M:0.2%,n:440 2022-08-17 13:43:13 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.6%[S:98.9%,D:0.7%],F:0.2%,M:0.2%,n:440 | |438 Complete BUSCOs (C) | |435 Complete and single-copy BUSCOs (S) | |3 Complete and duplicated BUSCOs (D) | |1 Fragmented BUSCOs (F) | |1 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 13:43:13 INFO: BUSCO analysis done. Total running time: 41 seconds 2022-08-17 13:43:13 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_brasiliense_NAK_247 2022-08-17 13:43:13 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 13:43:13 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 13:43:14 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 13:43:14 ***** 2022-08-17 13:43:14 INFO: Configuring BUSCO with local environment 2022-08-17 13:43:14 INFO: Mode is genome 2022-08-17 13:43:14 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 13:43:26 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_brasiliense_NAK_250.fna 2022-08-17 13:43:26 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 13:43:26 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 13:43:26 2022-08-17 13:43:27 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 13:43:28 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 13:43:28 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 13:43:28 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 13:43:28 2022-08-17 13:43:35 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 13:43:35 INFO: Genetic code 11 selected as optimal 2022-08-17 13:43:35 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 13:43:35 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 13:43:35 2022-08-17 13:43:40 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 13:43:45 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 13:43:48 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 13:43:52 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 13:43:55 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 13:43:58 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 13:44:00 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 13:44:02 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 13:44:04 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 13:44:06 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 13:44:06 INFO: Results: C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 2022-08-17 13:44:06 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 | |438 Complete BUSCOs (C) | |436 Complete and single-copy BUSCOs (S) | |2 Complete and duplicated BUSCOs (D) | |1 Fragmented BUSCOs (F) | |1 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 13:44:06 INFO: BUSCO analysis done. Total running time: 40 seconds 2022-08-17 13:44:06 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_brasiliense_NAK_250 2022-08-17 13:44:06 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 13:44:06 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 13:44:07 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 13:44:07 ***** 2022-08-17 13:44:07 INFO: Configuring BUSCO with local environment 2022-08-17 13:44:07 INFO: Mode is genome 2022-08-17 13:44:07 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 13:44:19 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_brasiliense_NAK_252.fna 2022-08-17 13:44:20 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 13:44:20 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 13:44:20 2022-08-17 13:44:20 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 13:44:20 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 13:44:20 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 13:44:20 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 13:44:20 2022-08-17 13:44:28 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 13:44:28 INFO: Genetic code 11 selected as optimal 2022-08-17 13:44:28 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 13:44:28 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 13:44:28 2022-08-17 13:44:34 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 13:44:38 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 13:44:41 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 13:44:45 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 13:44:48 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 13:44:51 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 13:44:53 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 13:44:55 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 13:44:58 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 13:44:59 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 13:44:59 INFO: Results: C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 2022-08-17 13:45:00 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 | |438 Complete BUSCOs (C) | |436 Complete and single-copy BUSCOs (S) | |2 Complete and duplicated BUSCOs (D) | |1 Fragmented BUSCOs (F) | |1 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 13:45:00 INFO: BUSCO analysis done. Total running time: 40 seconds 2022-08-17 13:45:00 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_brasiliense_NAK_252 2022-08-17 13:45:00 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 13:45:00 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 13:45:00 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 13:45:00 ***** 2022-08-17 13:45:00 INFO: Configuring BUSCO with local environment 2022-08-17 13:45:00 INFO: Mode is genome 2022-08-17 13:45:00 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 13:45:13 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_brasiliense_NAK_254.fna 2022-08-17 13:45:13 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 13:45:13 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 13:45:13 2022-08-17 13:45:14 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 13:45:14 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 13:45:14 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 13:45:14 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 13:45:14 2022-08-17 13:45:22 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 13:45:22 INFO: Genetic code 11 selected as optimal 2022-08-17 13:45:22 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 13:45:22 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 13:45:22 2022-08-17 13:45:27 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 13:45:31 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 13:45:35 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 13:45:38 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 13:45:41 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 13:45:44 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 13:45:46 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 13:45:48 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 13:45:51 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 13:45:52 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 13:45:52 INFO: Results: C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 2022-08-17 13:45:52 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 | |438 Complete BUSCOs (C) | |436 Complete and single-copy BUSCOs (S) | |2 Complete and duplicated BUSCOs (D) | |1 Fragmented BUSCOs (F) | |1 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 13:45:52 INFO: BUSCO analysis done. Total running time: 40 seconds 2022-08-17 13:45:52 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_brasiliense_NAK_254 2022-08-17 13:45:52 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 13:45:52 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 13:45:53 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 13:45:53 ***** 2022-08-17 13:45:53 INFO: Configuring BUSCO with local environment 2022-08-17 13:45:53 INFO: Mode is genome 2022-08-17 13:45:53 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 13:46:06 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_brasiliense_NAK_384.fna 2022-08-17 13:46:06 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 13:46:06 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 13:46:06 2022-08-17 13:46:07 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 13:46:07 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 13:46:07 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 13:46:07 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 13:46:07 2022-08-17 13:46:15 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 13:46:15 INFO: Genetic code 11 selected as optimal 2022-08-17 13:46:15 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 13:46:15 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 13:46:15 2022-08-17 13:46:21 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 13:46:25 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 13:46:29 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 13:46:33 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 13:46:36 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 13:46:39 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 13:46:41 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 13:46:43 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 13:46:45 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 13:46:47 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 13:46:47 INFO: Results: C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 2022-08-17 13:46:47 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 | |438 Complete BUSCOs (C) | |436 Complete and single-copy BUSCOs (S) | |2 Complete and duplicated BUSCOs (D) | |1 Fragmented BUSCOs (F) | |1 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 13:46:47 INFO: BUSCO analysis done. Total running time: 41 seconds 2022-08-17 13:46:47 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_brasiliense_NAK_384 2022-08-17 13:46:47 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 13:46:47 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 13:46:48 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 13:46:48 ***** 2022-08-17 13:46:48 INFO: Configuring BUSCO with local environment 2022-08-17 13:46:48 INFO: Mode is genome 2022-08-17 13:46:48 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 13:47:01 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_brasiliense_NAK_385.fna 2022-08-17 13:47:01 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 13:47:01 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 13:47:01 2022-08-17 13:47:02 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 13:47:02 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 13:47:02 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 13:47:02 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 13:47:02 2022-08-17 13:47:09 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 13:47:09 INFO: Genetic code 11 selected as optimal 2022-08-17 13:47:09 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 13:47:09 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 13:47:09 2022-08-17 13:47:15 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 13:47:19 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 13:47:23 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 13:47:26 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 13:47:29 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 13:47:32 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 13:47:35 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 13:47:37 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 13:47:39 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 13:47:40 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 13:47:41 INFO: Results: C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 2022-08-17 13:47:41 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 | |438 Complete BUSCOs (C) | |436 Complete and single-copy BUSCOs (S) | |2 Complete and duplicated BUSCOs (D) | |1 Fragmented BUSCOs (F) | |1 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 13:47:41 INFO: BUSCO analysis done. Total running time: 40 seconds 2022-08-17 13:47:41 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_brasiliense_NAK_385 2022-08-17 13:47:41 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 13:47:41 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 13:47:41 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 13:47:41 ***** 2022-08-17 13:47:41 INFO: Configuring BUSCO with local environment 2022-08-17 13:47:41 INFO: Mode is genome 2022-08-17 13:47:41 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 13:47:54 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_brasiliense_NAK_396.fna 2022-08-17 13:47:54 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 13:47:54 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 13:47:54 2022-08-17 13:47:55 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 13:47:55 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 13:47:55 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 13:47:55 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 13:47:55 2022-08-17 13:48:03 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 13:48:03 INFO: Genetic code 11 selected as optimal 2022-08-17 13:48:03 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 13:48:03 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 13:48:03 2022-08-17 13:48:08 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 13:48:13 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 13:48:16 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 13:48:19 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 13:48:22 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 13:48:25 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 13:48:28 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 13:48:30 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 13:48:32 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 13:48:34 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 13:48:34 INFO: Results: C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 2022-08-17 13:48:34 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 | |438 Complete BUSCOs (C) | |436 Complete and single-copy BUSCOs (S) | |2 Complete and duplicated BUSCOs (D) | |1 Fragmented BUSCOs (F) | |1 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 13:48:34 INFO: BUSCO analysis done. Total running time: 40 seconds 2022-08-17 13:48:34 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_brasiliense_NAK_396 2022-08-17 13:48:34 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 13:48:34 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 13:48:34 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 13:48:34 ***** 2022-08-17 13:48:34 INFO: Configuring BUSCO with local environment 2022-08-17 13:48:34 INFO: Mode is genome 2022-08-17 13:48:34 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 13:48:47 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_brasiliense_NAK_397.fna 2022-08-17 13:48:47 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 13:48:47 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 13:48:47 2022-08-17 13:48:48 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 13:48:48 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 13:48:48 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 13:48:48 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 13:48:48 2022-08-17 13:48:56 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 13:48:56 INFO: Genetic code 11 selected as optimal 2022-08-17 13:48:56 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 13:48:56 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 13:48:56 2022-08-17 13:49:02 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 13:49:06 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 13:49:09 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 13:49:13 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 13:49:16 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 13:49:19 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 13:49:22 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 13:49:24 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 13:49:26 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 13:49:28 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 13:49:28 INFO: Results: C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 2022-08-17 13:49:28 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 | |438 Complete BUSCOs (C) | |436 Complete and single-copy BUSCOs (S) | |2 Complete and duplicated BUSCOs (D) | |1 Fragmented BUSCOs (F) | |1 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 13:49:28 INFO: BUSCO analysis done. Total running time: 41 seconds 2022-08-17 13:49:28 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_brasiliense_NAK_397 2022-08-17 13:49:28 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 13:49:28 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 13:49:29 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 13:49:29 ***** 2022-08-17 13:49:29 INFO: Configuring BUSCO with local environment 2022-08-17 13:49:29 INFO: Mode is genome 2022-08-17 13:49:29 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 13:49:41 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_brasiliense_NAK_430.fna 2022-08-17 13:49:42 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 13:49:42 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 13:49:42 2022-08-17 13:49:43 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 13:49:43 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 13:49:43 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 13:49:43 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 13:49:43 2022-08-17 13:49:51 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 13:49:51 INFO: Genetic code 11 selected as optimal 2022-08-17 13:49:51 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 13:49:51 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 13:49:51 2022-08-17 13:49:56 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 13:50:01 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 13:50:04 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 13:50:08 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 13:50:11 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 13:50:14 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 13:50:17 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 13:50:19 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 13:50:21 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 13:50:22 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 13:50:23 INFO: Results: C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 2022-08-17 13:50:23 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 | |438 Complete BUSCOs (C) | |436 Complete and single-copy BUSCOs (S) | |2 Complete and duplicated BUSCOs (D) | |1 Fragmented BUSCOs (F) | |1 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 13:50:23 INFO: BUSCO analysis done. Total running time: 41 seconds 2022-08-17 13:50:23 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_brasiliense_NAK_430 2022-08-17 13:50:23 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 13:50:23 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 13:50:23 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 13:50:23 ***** 2022-08-17 13:50:23 INFO: Configuring BUSCO with local environment 2022-08-17 13:50:23 INFO: Mode is genome 2022-08-17 13:50:23 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 13:50:36 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_brasiliense_NAK_431.fna 2022-08-17 13:50:36 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 13:50:36 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 13:50:36 2022-08-17 13:50:37 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 13:50:37 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 13:50:37 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 13:50:37 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 13:50:37 2022-08-17 13:50:45 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 13:50:45 INFO: Genetic code 11 selected as optimal 2022-08-17 13:50:45 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 13:50:45 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 13:50:45 2022-08-17 13:50:51 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 13:50:55 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 13:50:59 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 13:51:02 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 13:51:05 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 13:51:08 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 13:51:11 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 13:51:13 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 13:51:15 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 13:51:17 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 13:51:17 INFO: Results: C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 2022-08-17 13:51:17 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 | |438 Complete BUSCOs (C) | |436 Complete and single-copy BUSCOs (S) | |2 Complete and duplicated BUSCOs (D) | |1 Fragmented BUSCOs (F) | |1 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 13:51:17 INFO: BUSCO analysis done. Total running time: 41 seconds 2022-08-17 13:51:17 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_brasiliense_NAK_431 2022-08-17 13:51:17 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 13:51:17 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 13:51:18 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 13:51:18 ***** 2022-08-17 13:51:18 INFO: Configuring BUSCO with local environment 2022-08-17 13:51:18 INFO: Mode is genome 2022-08-17 13:51:18 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 13:51:30 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_brasiliense_NAK_432.fna 2022-08-17 13:51:30 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 13:51:30 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 13:51:30 2022-08-17 13:51:31 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 13:51:31 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 13:51:31 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 13:51:31 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 13:51:31 2022-08-17 13:51:39 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 13:51:39 INFO: Genetic code 11 selected as optimal 2022-08-17 13:51:39 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 13:51:39 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 13:51:39 2022-08-17 13:51:44 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 13:51:48 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 13:51:51 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 13:51:55 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 13:51:58 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 13:52:01 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 13:52:04 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 13:52:05 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 13:52:08 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 13:52:09 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 13:52:09 INFO: Results: C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 2022-08-17 13:52:09 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 | |438 Complete BUSCOs (C) | |436 Complete and single-copy BUSCOs (S) | |2 Complete and duplicated BUSCOs (D) | |1 Fragmented BUSCOs (F) | |1 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 13:52:10 INFO: BUSCO analysis done. Total running time: 39 seconds 2022-08-17 13:52:10 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_brasiliense_NAK_432 2022-08-17 13:52:10 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 13:52:10 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 13:52:10 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 13:52:10 ***** 2022-08-17 13:52:10 INFO: Configuring BUSCO with local environment 2022-08-17 13:52:10 INFO: Mode is genome 2022-08-17 13:52:10 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 13:52:23 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_brasiliense_NAK_433.fna 2022-08-17 13:52:23 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 13:52:23 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 13:52:23 2022-08-17 13:52:24 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 13:52:24 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 13:52:24 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 13:52:24 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 13:52:24 2022-08-17 13:52:31 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 13:52:31 INFO: Genetic code 11 selected as optimal 2022-08-17 13:52:31 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 13:52:31 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 13:52:31 2022-08-17 13:52:36 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 13:52:40 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 13:52:43 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 13:52:47 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 13:52:50 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 13:52:52 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 13:52:55 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 13:52:57 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 13:52:59 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 13:53:01 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 13:53:01 INFO: Results: C:99.5%[S:99.3%,D:0.2%],F:0.2%,M:0.3%,n:440 2022-08-17 13:53:01 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.5%[S:99.3%,D:0.2%],F:0.2%,M:0.3%,n:440 | |438 Complete BUSCOs (C) | |437 Complete and single-copy BUSCOs (S) | |1 Complete and duplicated BUSCOs (D) | |1 Fragmented BUSCOs (F) | |1 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 13:53:01 INFO: BUSCO analysis done. Total running time: 38 seconds 2022-08-17 13:53:01 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_brasiliense_NAK_433 2022-08-17 13:53:01 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 13:53:01 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 13:53:01 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 13:53:01 ***** 2022-08-17 13:53:01 INFO: Configuring BUSCO with local environment 2022-08-17 13:53:01 INFO: Mode is genome 2022-08-17 13:53:01 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 13:53:14 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_brasiliense_NAK_434.fna 2022-08-17 13:53:14 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 13:53:14 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 13:53:14 2022-08-17 13:53:15 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 13:53:15 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 13:53:15 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 13:53:15 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 13:53:15 2022-08-17 13:53:23 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 13:53:23 INFO: Genetic code 11 selected as optimal 2022-08-17 13:53:23 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 13:53:23 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 13:53:23 2022-08-17 13:53:28 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 13:53:32 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 13:53:36 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 13:53:39 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 13:53:43 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 13:53:45 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 13:53:48 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 13:53:50 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 13:53:52 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 13:53:54 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 13:53:54 INFO: Results: C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 2022-08-17 13:53:54 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 | |438 Complete BUSCOs (C) | |436 Complete and single-copy BUSCOs (S) | |2 Complete and duplicated BUSCOs (D) | |1 Fragmented BUSCOs (F) | |1 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 13:53:54 INFO: BUSCO analysis done. Total running time: 40 seconds 2022-08-17 13:53:54 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_brasiliense_NAK_434 2022-08-17 13:53:54 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 13:53:54 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 13:53:55 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 13:53:55 ***** 2022-08-17 13:53:55 INFO: Configuring BUSCO with local environment 2022-08-17 13:53:55 INFO: Mode is genome 2022-08-17 13:53:55 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 13:54:07 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_brasiliense_NAK_435.fna 2022-08-17 13:54:07 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 13:54:07 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 13:54:07 2022-08-17 13:54:08 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 13:54:08 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 13:54:08 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 13:54:08 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 13:54:08 2022-08-17 13:54:16 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 13:54:16 INFO: Genetic code 11 selected as optimal 2022-08-17 13:54:16 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 13:54:16 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 13:54:16 2022-08-17 13:54:21 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 13:54:25 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 13:54:29 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 13:54:33 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 13:54:36 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 13:54:39 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 13:54:41 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 13:54:43 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 13:54:45 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 13:54:47 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 13:54:47 INFO: Results: C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 2022-08-17 13:54:47 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 | |438 Complete BUSCOs (C) | |436 Complete and single-copy BUSCOs (S) | |2 Complete and duplicated BUSCOs (D) | |1 Fragmented BUSCOs (F) | |1 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 13:54:47 INFO: BUSCO analysis done. Total running time: 40 seconds 2022-08-17 13:54:47 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_brasiliense_NAK_435 2022-08-17 13:54:47 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 13:54:47 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 13:54:48 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 13:54:48 ***** 2022-08-17 13:54:48 INFO: Configuring BUSCO with local environment 2022-08-17 13:54:48 INFO: Mode is genome 2022-08-17 13:54:48 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 13:54:48 INFO: Download connection problem. Retrying in 10 seconds 2022-08-17 13:55:05 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_brasiliense_NAK_466.fna 2022-08-17 13:55:05 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 13:55:05 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 13:55:05 2022-08-17 13:55:06 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 13:55:06 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 13:55:06 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 13:55:06 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 13:55:06 2022-08-17 13:55:13 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 13:55:14 INFO: Genetic code 11 selected as optimal 2022-08-17 13:55:14 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 13:55:14 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 13:55:14 2022-08-17 13:55:19 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 13:55:23 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 13:55:27 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 13:55:30 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 13:55:33 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 13:55:36 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 13:55:39 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 13:55:41 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 13:55:43 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 13:55:45 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 13:55:45 INFO: Results: C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 2022-08-17 13:55:45 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 | |438 Complete BUSCOs (C) | |436 Complete and single-copy BUSCOs (S) | |2 Complete and duplicated BUSCOs (D) | |1 Fragmented BUSCOs (F) | |1 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 13:55:45 INFO: BUSCO analysis done. Total running time: 40 seconds 2022-08-17 13:55:45 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_brasiliense_NAK_466 2022-08-17 13:55:45 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 13:55:45 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 13:55:45 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 13:55:45 ***** 2022-08-17 13:55:45 INFO: Configuring BUSCO with local environment 2022-08-17 13:55:45 INFO: Mode is genome 2022-08-17 13:55:45 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 13:55:46 INFO: Download connection problem. Retrying in 10 seconds 2022-08-17 13:56:02 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_brasiliense_NAK_468.fna 2022-08-17 13:56:03 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 13:56:03 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 13:56:03 2022-08-17 13:56:03 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 13:56:03 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 13:56:03 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 13:56:03 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 13:56:03 2022-08-17 13:56:11 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 13:56:11 INFO: Genetic code 11 selected as optimal 2022-08-17 13:56:11 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 13:56:11 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 13:56:11 2022-08-17 13:56:16 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 13:56:21 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 13:56:24 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 13:56:27 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 13:56:31 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 13:56:33 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 13:56:36 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 13:56:38 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 13:56:40 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 13:56:42 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 13:56:42 INFO: Results: C:99.5%[S:99.3%,D:0.2%],F:0.2%,M:0.3%,n:440 2022-08-17 13:56:42 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.5%[S:99.3%,D:0.2%],F:0.2%,M:0.3%,n:440 | |438 Complete BUSCOs (C) | |437 Complete and single-copy BUSCOs (S) | |1 Complete and duplicated BUSCOs (D) | |1 Fragmented BUSCOs (F) | |1 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 13:56:42 INFO: BUSCO analysis done. Total running time: 40 seconds 2022-08-17 13:56:42 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_brasiliense_NAK_468 2022-08-17 13:56:42 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 13:56:42 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 13:56:42 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 13:56:42 ***** 2022-08-17 13:56:42 INFO: Configuring BUSCO with local environment 2022-08-17 13:56:42 INFO: Mode is genome 2022-08-17 13:56:43 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 13:57:01 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_brasiliense_NAK_470.fna 2022-08-17 13:57:01 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 13:57:01 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 13:57:01 2022-08-17 13:57:02 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 13:57:02 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 13:57:02 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 13:57:02 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 13:57:02 2022-08-17 13:57:09 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 13:57:10 INFO: Genetic code 11 selected as optimal 2022-08-17 13:57:10 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 13:57:10 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 13:57:10 2022-08-17 13:57:15 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 13:57:19 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 13:57:22 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 13:57:26 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 13:57:29 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 13:57:32 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 13:57:34 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 13:57:36 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 13:57:38 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 13:57:40 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 13:57:40 INFO: Results: C:99.5%[S:99.3%,D:0.2%],F:0.2%,M:0.3%,n:440 2022-08-17 13:57:40 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.5%[S:99.3%,D:0.2%],F:0.2%,M:0.3%,n:440 | |438 Complete BUSCOs (C) | |437 Complete and single-copy BUSCOs (S) | |1 Complete and duplicated BUSCOs (D) | |1 Fragmented BUSCOs (F) | |1 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 13:57:40 INFO: BUSCO analysis done. Total running time: 39 seconds 2022-08-17 13:57:40 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_brasiliense_NAK_470 2022-08-17 13:57:40 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 13:57:40 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 13:57:41 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 13:57:41 ***** 2022-08-17 13:57:41 INFO: Configuring BUSCO with local environment 2022-08-17 13:57:41 INFO: Mode is genome 2022-08-17 13:57:41 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 13:57:56 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_brasiliense_PcbHPI01.fna 2022-08-17 13:57:57 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 13:57:57 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 13:57:57 2022-08-17 13:57:58 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 13:57:58 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 13:57:58 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 13:57:58 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 13:57:58 2022-08-17 13:58:05 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 13:58:05 INFO: Genetic code 11 selected as optimal 2022-08-17 13:58:05 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 13:58:05 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 13:58:05 2022-08-17 13:58:11 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 13:58:15 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 13:58:19 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 13:58:22 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 13:58:25 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 13:58:28 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 13:58:31 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 13:58:33 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 13:58:35 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 13:58:36 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 13:58:36 INFO: Results: C:99.6%[S:98.9%,D:0.7%],F:0.2%,M:0.2%,n:440 2022-08-17 13:58:37 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.6%[S:98.9%,D:0.7%],F:0.2%,M:0.2%,n:440 | |438 Complete BUSCOs (C) | |435 Complete and single-copy BUSCOs (S) | |3 Complete and duplicated BUSCOs (D) | |1 Fragmented BUSCOs (F) | |1 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 13:58:37 INFO: BUSCO analysis done. Total running time: 40 seconds 2022-08-17 13:58:37 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_brasiliense_PcbHPI01 2022-08-17 13:58:37 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 13:58:37 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 13:58:37 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 13:58:37 ***** 2022-08-17 13:58:37 INFO: Configuring BUSCO with local environment 2022-08-17 13:58:37 INFO: Mode is genome 2022-08-17 13:58:37 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 13:58:50 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_brasiliense_S2.fna 2022-08-17 13:58:50 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 13:58:50 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 13:58:50 2022-08-17 13:58:51 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 13:58:51 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 13:58:51 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 13:58:51 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 13:58:51 2022-08-17 13:59:00 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 13:59:00 INFO: Genetic code 11 selected as optimal 2022-08-17 13:59:00 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 13:59:00 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 13:59:00 2022-08-17 13:59:05 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 13:59:10 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 13:59:13 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 13:59:17 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 13:59:20 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 13:59:23 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 13:59:26 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 13:59:28 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 13:59:30 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 13:59:31 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 13:59:31 INFO: Results: C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 2022-08-17 13:59:31 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 | |438 Complete BUSCOs (C) | |436 Complete and single-copy BUSCOs (S) | |2 Complete and duplicated BUSCOs (D) | |1 Fragmented BUSCOs (F) | |1 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 13:59:31 INFO: BUSCO analysis done. Total running time: 42 seconds 2022-08-17 13:59:31 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_brasiliense_S2 2022-08-17 13:59:31 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 13:59:31 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 13:59:32 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 13:59:32 ***** 2022-08-17 13:59:32 INFO: Configuring BUSCO with local environment 2022-08-17 13:59:32 INFO: Mode is genome 2022-08-17 13:59:32 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 13:59:45 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_brasiliense_SR10.fna 2022-08-17 13:59:45 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 13:59:45 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 13:59:45 2022-08-17 13:59:46 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 13:59:46 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 13:59:46 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 13:59:46 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 13:59:46 2022-08-17 13:59:54 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 13:59:54 INFO: Genetic code 11 selected as optimal 2022-08-17 13:59:54 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 13:59:54 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 13:59:54 2022-08-17 13:59:59 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 14:00:04 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 14:00:07 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 14:00:11 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 14:00:14 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 14:00:17 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 14:00:20 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 14:00:21 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 14:00:24 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 14:00:25 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 14:00:25 INFO: Results: C:99.6%[S:98.9%,D:0.7%],F:0.2%,M:0.2%,n:440 2022-08-17 14:00:25 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.6%[S:98.9%,D:0.7%],F:0.2%,M:0.2%,n:440 | |438 Complete BUSCOs (C) | |435 Complete and single-copy BUSCOs (S) | |3 Complete and duplicated BUSCOs (D) | |1 Fragmented BUSCOs (F) | |1 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 14:00:25 INFO: BUSCO analysis done. Total running time: 41 seconds 2022-08-17 14:00:25 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_brasiliense_SR10 2022-08-17 14:00:25 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 14:00:25 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 14:00:26 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 14:00:26 ***** 2022-08-17 14:00:26 INFO: Configuring BUSCO with local environment 2022-08-17 14:00:26 INFO: Mode is genome 2022-08-17 14:00:26 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 14:00:39 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_brasiliense_SR11.fna 2022-08-17 14:00:39 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 14:00:39 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 14:00:39 2022-08-17 14:00:40 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 14:00:40 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 14:00:40 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 14:00:40 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 14:00:40 2022-08-17 14:00:51 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 14:00:51 INFO: Genetic code 11 selected as optimal 2022-08-17 14:00:51 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 14:00:51 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 14:00:51 2022-08-17 14:00:56 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 14:01:01 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 14:01:05 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 14:01:08 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 14:01:11 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 14:01:14 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 14:01:16 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 14:01:18 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 14:01:20 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 14:01:22 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 14:01:22 INFO: Results: C:99.6%[S:98.9%,D:0.7%],F:0.2%,M:0.2%,n:440 2022-08-17 14:01:22 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.6%[S:98.9%,D:0.7%],F:0.2%,M:0.2%,n:440 | |438 Complete BUSCOs (C) | |435 Complete and single-copy BUSCOs (S) | |3 Complete and duplicated BUSCOs (D) | |1 Fragmented BUSCOs (F) | |1 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 14:01:22 INFO: BUSCO analysis done. Total running time: 44 seconds 2022-08-17 14:01:22 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_brasiliense_SR11 2022-08-17 14:01:22 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 14:01:22 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 14:01:23 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 14:01:23 ***** 2022-08-17 14:01:23 INFO: Configuring BUSCO with local environment 2022-08-17 14:01:23 INFO: Mode is genome 2022-08-17 14:01:23 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 14:01:35 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_brasiliense_SR5.fna 2022-08-17 14:01:36 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 14:01:36 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 14:01:36 2022-08-17 14:01:37 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 14:01:37 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 14:01:37 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 14:01:37 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 14:01:37 2022-08-17 14:01:44 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 14:01:45 INFO: Genetic code 11 selected as optimal 2022-08-17 14:01:45 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 14:01:45 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 14:01:45 2022-08-17 14:01:50 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 14:01:54 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 14:01:58 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 14:02:01 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 14:02:04 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 14:02:07 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 14:02:10 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 14:02:12 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 14:02:14 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 14:02:16 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 14:02:16 INFO: Results: C:99.6%[S:98.9%,D:0.7%],F:0.2%,M:0.2%,n:440 2022-08-17 14:02:16 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.6%[S:98.9%,D:0.7%],F:0.2%,M:0.2%,n:440 | |438 Complete BUSCOs (C) | |435 Complete and single-copy BUSCOs (S) | |3 Complete and duplicated BUSCOs (D) | |1 Fragmented BUSCOs (F) | |1 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 14:02:16 INFO: BUSCO analysis done. Total running time: 41 seconds 2022-08-17 14:02:16 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_brasiliense_SR5 2022-08-17 14:02:16 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 14:02:16 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 14:02:17 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 14:02:17 ***** 2022-08-17 14:02:17 INFO: Configuring BUSCO with local environment 2022-08-17 14:02:17 INFO: Mode is genome 2022-08-17 14:02:17 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 14:02:29 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_brasiliense_SR6.fna 2022-08-17 14:02:29 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 14:02:29 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 14:02:29 2022-08-17 14:02:30 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 14:02:30 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 14:02:30 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 14:02:30 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 14:02:30 2022-08-17 14:02:38 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 14:02:38 INFO: Genetic code 11 selected as optimal 2022-08-17 14:02:38 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 14:02:38 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 14:02:38 2022-08-17 14:02:44 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 14:02:48 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 14:02:52 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 14:02:55 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 14:02:59 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 14:03:01 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 14:03:04 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 14:03:06 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 14:03:08 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 14:03:10 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 14:03:10 INFO: Results: C:99.6%[S:98.9%,D:0.7%],F:0.2%,M:0.2%,n:440 2022-08-17 14:03:10 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.6%[S:98.9%,D:0.7%],F:0.2%,M:0.2%,n:440 | |438 Complete BUSCOs (C) | |435 Complete and single-copy BUSCOs (S) | |3 Complete and duplicated BUSCOs (D) | |1 Fragmented BUSCOs (F) | |1 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 14:03:10 INFO: BUSCO analysis done. Total running time: 41 seconds 2022-08-17 14:03:10 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_brasiliense_SR6 2022-08-17 14:03:10 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 14:03:10 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 14:03:11 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 14:03:11 ***** 2022-08-17 14:03:11 INFO: Configuring BUSCO with local environment 2022-08-17 14:03:11 INFO: Mode is genome 2022-08-17 14:03:11 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 14:03:23 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_brasiliense_SR7.fna 2022-08-17 14:03:24 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 14:03:24 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 14:03:24 2022-08-17 14:03:24 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 14:03:24 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 14:03:24 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 14:03:24 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 14:03:24 2022-08-17 14:03:32 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 14:03:32 INFO: Genetic code 11 selected as optimal 2022-08-17 14:03:32 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 14:03:32 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 14:03:32 2022-08-17 14:03:38 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 14:03:42 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 14:03:45 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 14:03:49 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 14:03:52 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 14:03:55 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 14:03:57 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 14:03:59 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 14:04:02 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 14:04:03 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 14:04:03 INFO: Results: C:99.3%[S:98.6%,D:0.7%],F:0.5%,M:0.2%,n:440 2022-08-17 14:04:03 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.3%[S:98.6%,D:0.7%],F:0.5%,M:0.2%,n:440 | |437 Complete BUSCOs (C) | |434 Complete and single-copy BUSCOs (S) | |3 Complete and duplicated BUSCOs (D) | |2 Fragmented BUSCOs (F) | |1 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 14:04:03 INFO: BUSCO analysis done. Total running time: 40 seconds 2022-08-17 14:04:03 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_brasiliense_SR7 2022-08-17 14:04:03 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 14:04:03 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 14:04:04 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 14:04:04 ***** 2022-08-17 14:04:04 INFO: Configuring BUSCO with local environment 2022-08-17 14:04:04 INFO: Mode is genome 2022-08-17 14:04:04 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 14:04:17 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_brasiliense_SR8.fna 2022-08-17 14:04:17 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 14:04:17 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 14:04:17 2022-08-17 14:04:18 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 14:04:18 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 14:04:18 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 14:04:18 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 14:04:18 2022-08-17 14:04:25 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 14:04:26 INFO: Genetic code 11 selected as optimal 2022-08-17 14:04:26 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 14:04:26 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 14:04:26 2022-08-17 14:04:31 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 14:04:35 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 14:04:39 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 14:04:42 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 14:04:45 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 14:04:48 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 14:04:51 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 14:04:53 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 14:04:55 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 14:04:57 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 14:04:57 INFO: Results: C:99.1%[S:98.4%,D:0.7%],F:0.7%,M:0.2%,n:440 2022-08-17 14:04:57 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.1%[S:98.4%,D:0.7%],F:0.7%,M:0.2%,n:440 | |436 Complete BUSCOs (C) | |433 Complete and single-copy BUSCOs (S) | |3 Complete and duplicated BUSCOs (D) | |3 Fragmented BUSCOs (F) | |1 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 14:04:57 INFO: BUSCO analysis done. Total running time: 40 seconds 2022-08-17 14:04:57 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_brasiliense_SR8 2022-08-17 14:04:57 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 14:04:57 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 14:04:57 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 14:04:57 ***** 2022-08-17 14:04:57 INFO: Configuring BUSCO with local environment 2022-08-17 14:04:57 INFO: Mode is genome 2022-08-17 14:04:57 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 14:05:10 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_brasiliense_SX309.fna 2022-08-17 14:05:10 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 14:05:10 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 14:05:10 2022-08-17 14:05:11 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 14:05:11 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 14:05:11 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 14:05:11 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 14:05:11 2022-08-17 14:05:19 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 14:05:19 INFO: Genetic code 11 selected as optimal 2022-08-17 14:05:19 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 14:05:19 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 14:05:19 2022-08-17 14:05:25 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 14:05:29 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 14:05:32 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 14:05:36 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 14:05:39 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 14:05:42 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 14:05:44 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 14:05:46 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 14:05:48 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 14:05:50 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 14:05:50 INFO: Results: C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 2022-08-17 14:05:50 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 | |438 Complete BUSCOs (C) | |436 Complete and single-copy BUSCOs (S) | |2 Complete and duplicated BUSCOs (D) | |1 Fragmented BUSCOs (F) | |1 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 14:05:50 INFO: BUSCO analysis done. Total running time: 40 seconds 2022-08-17 14:05:50 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_brasiliense_SX309 2022-08-17 14:05:50 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 14:05:50 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 14:05:51 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 14:05:51 ***** 2022-08-17 14:05:51 INFO: Configuring BUSCO with local environment 2022-08-17 14:05:51 INFO: Mode is genome 2022-08-17 14:05:51 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 14:06:03 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_brasiliense_TS20HJ1.fna 2022-08-17 14:06:04 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 14:06:04 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 14:06:04 2022-08-17 14:06:04 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 14:06:04 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 14:06:04 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 14:06:04 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 14:06:04 2022-08-17 14:06:12 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 14:06:13 INFO: Genetic code 11 selected as optimal 2022-08-17 14:06:13 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 14:06:13 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 14:06:13 2022-08-17 14:06:17 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 14:06:21 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 14:06:25 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 14:06:28 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 14:06:31 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 14:06:34 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 14:06:36 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 14:06:38 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 14:06:40 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 14:06:42 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 14:06:42 INFO: Results: C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 2022-08-17 14:06:42 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 | |438 Complete BUSCOs (C) | |436 Complete and single-copy BUSCOs (S) | |2 Complete and duplicated BUSCOs (D) | |1 Fragmented BUSCOs (F) | |1 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 14:06:42 INFO: BUSCO analysis done. Total running time: 39 seconds 2022-08-17 14:06:42 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_brasiliense_TS20HJ1 2022-08-17 14:06:42 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 14:06:42 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 14:06:43 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 14:06:43 ***** 2022-08-17 14:06:43 INFO: Configuring BUSCO with local environment 2022-08-17 14:06:43 INFO: Mode is genome 2022-08-17 14:06:43 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 14:06:56 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_brasiliense_Y21.fna 2022-08-17 14:06:56 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 14:06:56 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 14:06:56 2022-08-17 14:06:57 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 14:06:57 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 14:06:57 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 14:06:57 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 14:06:57 2022-08-17 14:07:04 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 14:07:05 INFO: Genetic code 11 selected as optimal 2022-08-17 14:07:05 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 14:07:05 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 14:07:05 2022-08-17 14:07:10 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 14:07:14 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 14:07:18 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 14:07:21 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 14:07:24 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 14:07:26 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 14:07:29 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 14:07:31 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 14:07:33 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 14:07:35 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 14:07:35 INFO: Results: C:99.5%[S:99.3%,D:0.2%],F:0.2%,M:0.3%,n:440 2022-08-17 14:07:35 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.5%[S:99.3%,D:0.2%],F:0.2%,M:0.3%,n:440 | |438 Complete BUSCOs (C) | |437 Complete and single-copy BUSCOs (S) | |1 Complete and duplicated BUSCOs (D) | |1 Fragmented BUSCOs (F) | |1 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 14:07:35 INFO: BUSCO analysis done. Total running time: 39 seconds 2022-08-17 14:07:35 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_brasiliense_Y21 2022-08-17 14:07:35 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 14:07:35 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 14:07:36 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 14:07:36 ***** 2022-08-17 14:07:36 INFO: Configuring BUSCO with local environment 2022-08-17 14:07:36 INFO: Mode is genome 2022-08-17 14:07:36 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 14:07:48 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_brasiliense_Y29.fna 2022-08-17 14:07:48 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 14:07:48 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 14:07:48 2022-08-17 14:07:49 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 14:07:49 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 14:07:49 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 14:07:49 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 14:07:49 2022-08-17 14:07:57 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 14:07:57 INFO: Genetic code 11 selected as optimal 2022-08-17 14:07:57 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 14:07:57 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 14:07:57 2022-08-17 14:08:03 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 14:08:07 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 14:08:10 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 14:08:14 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 14:08:17 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 14:08:20 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 14:08:22 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 14:08:24 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 14:08:26 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 14:08:28 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 14:08:28 INFO: Results: C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 2022-08-17 14:08:28 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 | |438 Complete BUSCOs (C) | |436 Complete and single-copy BUSCOs (S) | |2 Complete and duplicated BUSCOs (D) | |1 Fragmented BUSCOs (F) | |1 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 14:08:28 INFO: BUSCO analysis done. Total running time: 40 seconds 2022-08-17 14:08:28 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_brasiliense_Y29 2022-08-17 14:08:28 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 14:08:28 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 14:08:29 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 14:08:29 ***** 2022-08-17 14:08:29 INFO: Configuring BUSCO with local environment 2022-08-17 14:08:29 INFO: Mode is genome 2022-08-17 14:08:29 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 14:08:41 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_brasiliense_Y31.fna 2022-08-17 14:08:42 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 14:08:42 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 14:08:42 2022-08-17 14:08:43 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 14:08:43 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 14:08:43 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 14:08:43 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 14:08:43 2022-08-17 14:08:51 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 14:08:51 INFO: Genetic code 11 selected as optimal 2022-08-17 14:08:51 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 14:08:51 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 14:08:51 2022-08-17 14:08:56 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 14:09:00 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 14:09:04 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 14:09:07 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 14:09:11 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 14:09:14 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 14:09:16 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 14:09:18 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 14:09:20 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 14:09:22 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 14:09:22 INFO: Results: C:99.4%[S:98.9%,D:0.5%],F:0.5%,M:0.1%,n:440 2022-08-17 14:09:22 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.4%[S:98.9%,D:0.5%],F:0.5%,M:0.1%,n:440 | |437 Complete BUSCOs (C) | |435 Complete and single-copy BUSCOs (S) | |2 Complete and duplicated BUSCOs (D) | |2 Fragmented BUSCOs (F) | |1 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 14:09:22 INFO: BUSCO analysis done. Total running time: 41 seconds 2022-08-17 14:09:22 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_brasiliense_Y31 2022-08-17 14:09:22 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 14:09:22 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 14:09:23 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 14:09:23 ***** 2022-08-17 14:09:23 INFO: Configuring BUSCO with local environment 2022-08-17 14:09:23 INFO: Mode is genome 2022-08-17 14:09:23 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 14:09:35 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_brasiliense_Y3.fna 2022-08-17 14:09:35 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 14:09:35 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 14:09:35 2022-08-17 14:09:36 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 14:09:37 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 14:09:37 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 14:09:37 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 14:09:37 2022-08-17 14:09:44 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 14:09:44 INFO: Genetic code 11 selected as optimal 2022-08-17 14:09:44 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 14:09:44 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 14:09:44 2022-08-17 14:09:50 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 14:09:54 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 14:09:58 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 14:10:01 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 14:10:05 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 14:10:07 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 14:10:10 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 14:10:12 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 14:10:14 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 14:10:16 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 14:10:16 INFO: Results: C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 2022-08-17 14:10:16 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 | |438 Complete BUSCOs (C) | |436 Complete and single-copy BUSCOs (S) | |2 Complete and duplicated BUSCOs (D) | |1 Fragmented BUSCOs (F) | |1 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 14:10:16 INFO: BUSCO analysis done. Total running time: 41 seconds 2022-08-17 14:10:16 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_brasiliense_Y3 2022-08-17 14:10:16 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 14:10:16 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 14:10:17 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 14:10:17 ***** 2022-08-17 14:10:17 INFO: Configuring BUSCO with local environment 2022-08-17 14:10:17 INFO: Mode is genome 2022-08-17 14:10:17 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 14:10:29 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_brasiliense_Y49.fna 2022-08-17 14:10:29 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 14:10:29 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 14:10:29 2022-08-17 14:10:30 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 14:10:30 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 14:10:30 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 14:10:30 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 14:10:30 2022-08-17 14:10:38 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 14:10:38 INFO: Genetic code 11 selected as optimal 2022-08-17 14:10:38 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 14:10:38 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 14:10:38 2022-08-17 14:10:43 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 14:10:48 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 14:10:51 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 14:10:54 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 14:10:57 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 14:11:00 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 14:11:03 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 14:11:05 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 14:11:07 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 14:11:08 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 14:11:09 INFO: Results: C:99.4%[S:98.9%,D:0.5%],F:0.5%,M:0.1%,n:440 2022-08-17 14:11:09 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.4%[S:98.9%,D:0.5%],F:0.5%,M:0.1%,n:440 | |437 Complete BUSCOs (C) | |435 Complete and single-copy BUSCOs (S) | |2 Complete and duplicated BUSCOs (D) | |2 Fragmented BUSCOs (F) | |1 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 14:11:09 INFO: BUSCO analysis done. Total running time: 40 seconds 2022-08-17 14:11:09 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_brasiliense_Y49 2022-08-17 14:11:09 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 14:11:09 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 14:11:09 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 14:11:09 ***** 2022-08-17 14:11:09 INFO: Configuring BUSCO with local environment 2022-08-17 14:11:09 INFO: Mode is genome 2022-08-17 14:11:09 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 14:11:22 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_brasiliense_Y52.fna 2022-08-17 14:11:22 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 14:11:22 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 14:11:22 2022-08-17 14:11:23 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 14:11:23 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 14:11:23 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 14:11:23 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 14:11:23 2022-08-17 14:11:31 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 14:11:31 INFO: Genetic code 11 selected as optimal 2022-08-17 14:11:31 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 14:11:31 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 14:11:31 2022-08-17 14:11:36 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 14:11:41 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 14:11:44 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 14:11:47 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 14:11:51 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 14:11:53 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 14:11:56 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 14:11:58 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 14:12:00 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 14:12:02 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 14:12:02 INFO: Results: C:99.5%[S:99.3%,D:0.2%],F:0.2%,M:0.3%,n:440 2022-08-17 14:12:02 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.5%[S:99.3%,D:0.2%],F:0.2%,M:0.3%,n:440 | |438 Complete BUSCOs (C) | |437 Complete and single-copy BUSCOs (S) | |1 Complete and duplicated BUSCOs (D) | |1 Fragmented BUSCOs (F) | |1 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 14:12:02 INFO: BUSCO analysis done. Total running time: 40 seconds 2022-08-17 14:12:02 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_brasiliense_Y52 2022-08-17 14:12:02 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 14:12:02 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 14:12:03 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 14:12:03 ***** 2022-08-17 14:12:03 INFO: Configuring BUSCO with local environment 2022-08-17 14:12:03 INFO: Mode is genome 2022-08-17 14:12:03 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 14:12:15 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_brasiliense_Y60.fna 2022-08-17 14:12:15 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 14:12:15 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 14:12:15 2022-08-17 14:12:16 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 14:12:16 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 14:12:16 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 14:12:16 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 14:12:16 2022-08-17 14:12:24 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 14:12:24 INFO: Genetic code 11 selected as optimal 2022-08-17 14:12:24 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 14:12:24 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 14:12:24 2022-08-17 14:12:29 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 14:12:34 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 14:12:37 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 14:12:41 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 14:12:44 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 14:12:47 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 14:12:49 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 14:12:51 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 14:12:53 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 14:12:55 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 14:12:55 INFO: Results: C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 2022-08-17 14:12:55 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 | |438 Complete BUSCOs (C) | |436 Complete and single-copy BUSCOs (S) | |2 Complete and duplicated BUSCOs (D) | |1 Fragmented BUSCOs (F) | |1 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 14:12:55 INFO: BUSCO analysis done. Total running time: 40 seconds 2022-08-17 14:12:55 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_brasiliense_Y60 2022-08-17 14:12:55 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 14:12:55 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 14:12:56 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 14:12:56 ***** 2022-08-17 14:12:56 INFO: Configuring BUSCO with local environment 2022-08-17 14:12:56 INFO: Mode is genome 2022-08-17 14:12:56 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 14:13:08 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_brasiliense_Y62.fna 2022-08-17 14:13:09 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 14:13:09 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 14:13:09 2022-08-17 14:13:09 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 14:13:09 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 14:13:09 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 14:13:09 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 14:13:09 2022-08-17 14:13:17 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 14:13:17 INFO: Genetic code 11 selected as optimal 2022-08-17 14:13:17 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 14:13:17 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 14:13:17 2022-08-17 14:13:22 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 14:13:27 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 14:13:30 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 14:13:33 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 14:13:37 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 14:13:39 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 14:13:42 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 14:13:44 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 14:13:46 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 14:13:48 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 14:13:48 INFO: Results: C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 2022-08-17 14:13:48 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 | |438 Complete BUSCOs (C) | |436 Complete and single-copy BUSCOs (S) | |2 Complete and duplicated BUSCOs (D) | |1 Fragmented BUSCOs (F) | |1 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 14:13:48 INFO: BUSCO analysis done. Total running time: 40 seconds 2022-08-17 14:13:48 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_brasiliense_Y62 2022-08-17 14:13:48 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 14:13:48 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 14:13:49 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 14:13:49 ***** 2022-08-17 14:13:49 INFO: Configuring BUSCO with local environment 2022-08-17 14:13:49 INFO: Mode is genome 2022-08-17 14:13:49 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 14:14:01 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_brasiliense_Y64.fna 2022-08-17 14:14:02 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 14:14:02 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 14:14:02 2022-08-17 14:14:03 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 14:14:03 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 14:14:03 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 14:14:03 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 14:14:03 2022-08-17 14:14:10 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 14:14:10 INFO: Genetic code 11 selected as optimal 2022-08-17 14:14:10 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 14:14:10 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 14:14:10 2022-08-17 14:14:16 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 14:14:20 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 14:14:23 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 14:14:27 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 14:14:30 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 14:14:33 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 14:14:35 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 14:14:37 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 14:14:39 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 14:14:41 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 14:14:41 INFO: Results: C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 2022-08-17 14:14:41 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 | |438 Complete BUSCOs (C) | |436 Complete and single-copy BUSCOs (S) | |2 Complete and duplicated BUSCOs (D) | |1 Fragmented BUSCOs (F) | |1 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 14:14:41 INFO: BUSCO analysis done. Total running time: 40 seconds 2022-08-17 14:14:41 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_brasiliense_Y64 2022-08-17 14:14:41 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 14:14:41 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 14:14:42 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 14:14:42 ***** 2022-08-17 14:14:42 INFO: Configuring BUSCO with local environment 2022-08-17 14:14:42 INFO: Mode is genome 2022-08-17 14:14:42 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 14:14:55 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_brasiliense_Y65.fna 2022-08-17 14:14:55 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 14:14:55 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 14:14:55 2022-08-17 14:14:56 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 14:14:56 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 14:14:56 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 14:14:56 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 14:14:56 2022-08-17 14:15:03 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 14:15:04 INFO: Genetic code 11 selected as optimal 2022-08-17 14:15:04 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 14:15:04 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 14:15:04 2022-08-17 14:15:09 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 14:15:13 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 14:15:16 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 14:15:20 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 14:15:23 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 14:15:26 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 14:15:28 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 14:15:30 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 14:15:32 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 14:15:34 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 14:15:34 INFO: Results: C:99.1%[S:98.6%,D:0.5%],F:0.2%,M:0.7%,n:440 2022-08-17 14:15:34 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.1%[S:98.6%,D:0.5%],F:0.2%,M:0.7%,n:440 | |436 Complete BUSCOs (C) | |434 Complete and single-copy BUSCOs (S) | |2 Complete and duplicated BUSCOs (D) | |1 Fragmented BUSCOs (F) | |3 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 14:15:34 INFO: BUSCO analysis done. Total running time: 39 seconds 2022-08-17 14:15:34 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_brasiliense_Y65 2022-08-17 14:15:34 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 14:15:34 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 14:15:35 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 14:15:35 ***** 2022-08-17 14:15:35 INFO: Configuring BUSCO with local environment 2022-08-17 14:15:35 INFO: Mode is genome 2022-08-17 14:15:35 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 14:15:47 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_brasiliense_YCY46.fna 2022-08-17 14:15:47 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 14:15:47 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 14:15:47 2022-08-17 14:15:48 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 14:15:48 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 14:15:48 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 14:15:48 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 14:15:48 2022-08-17 14:15:56 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 14:15:56 INFO: Genetic code 11 selected as optimal 2022-08-17 14:15:56 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 14:15:56 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 14:15:56 2022-08-17 14:16:01 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 14:16:06 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 14:16:09 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 14:16:13 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 14:16:16 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 14:16:18 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 14:16:21 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 14:16:23 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 14:16:25 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 14:16:27 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 14:16:27 INFO: Results: C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 2022-08-17 14:16:27 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 | |438 Complete BUSCOs (C) | |436 Complete and single-copy BUSCOs (S) | |2 Complete and duplicated BUSCOs (D) | |1 Fragmented BUSCOs (F) | |1 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 14:16:27 INFO: BUSCO analysis done. Total running time: 40 seconds 2022-08-17 14:16:27 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_brasiliense_YCY46 2022-08-17 14:16:27 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 14:16:27 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 14:16:28 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 14:16:28 ***** 2022-08-17 14:16:28 INFO: Configuring BUSCO with local environment 2022-08-17 14:16:28 INFO: Mode is genome 2022-08-17 14:16:28 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 14:16:40 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_brasiliense_ZLMLSHJ5.fna 2022-08-17 14:16:40 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 14:16:40 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 14:16:40 2022-08-17 14:16:41 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 14:16:41 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 14:16:41 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 14:16:41 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 14:16:41 2022-08-17 14:16:49 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 14:16:49 INFO: Genetic code 11 selected as optimal 2022-08-17 14:16:49 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 14:16:49 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 14:16:49 2022-08-17 14:16:54 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 14:16:58 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 14:17:02 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 14:17:05 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 14:17:08 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 14:17:11 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 14:17:14 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 14:17:16 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 14:17:18 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 14:17:20 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 14:17:20 INFO: Results: C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 2022-08-17 14:17:20 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 | |438 Complete BUSCOs (C) | |436 Complete and single-copy BUSCOs (S) | |2 Complete and duplicated BUSCOs (D) | |1 Fragmented BUSCOs (F) | |1 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 14:17:20 INFO: BUSCO analysis done. Total running time: 40 seconds 2022-08-17 14:17:20 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_brasiliense_ZLMLSHJ5 2022-08-17 14:17:20 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 14:17:20 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 14:17:21 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 14:17:21 ***** 2022-08-17 14:17:21 INFO: Configuring BUSCO with local environment 2022-08-17 14:17:21 INFO: Mode is genome 2022-08-17 14:17:21 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 14:17:33 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_carotovorum_2A.fna 2022-08-17 14:17:33 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 14:17:33 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 14:17:33 2022-08-17 14:17:34 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 14:17:34 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 14:17:34 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 14:17:34 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 14:17:34 2022-08-17 14:17:42 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 14:17:42 INFO: Genetic code 11 selected as optimal 2022-08-17 14:17:42 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 14:17:42 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 14:17:42 2022-08-17 14:17:47 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 14:17:51 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 14:17:55 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 14:17:58 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 14:18:01 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 14:18:04 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 14:18:07 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 14:18:09 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 14:18:11 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 14:18:12 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 14:18:12 INFO: Results: C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 2022-08-17 14:18:13 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 | |438 Complete BUSCOs (C) | |436 Complete and single-copy BUSCOs (S) | |2 Complete and duplicated BUSCOs (D) | |1 Fragmented BUSCOs (F) | |1 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 14:18:13 INFO: BUSCO analysis done. Total running time: 39 seconds 2022-08-17 14:18:13 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_carotovorum_2A 2022-08-17 14:18:13 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 14:18:13 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 14:18:13 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 14:18:13 ***** 2022-08-17 14:18:13 INFO: Configuring BUSCO with local environment 2022-08-17 14:18:13 INFO: Mode is genome 2022-08-17 14:18:13 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 14:18:14 INFO: Download connection problem. Retrying in 10 seconds 2022-08-17 14:18:32 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_carotovorum_A077-S18-O15.fna 2022-08-17 14:18:33 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 14:18:33 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 14:18:33 2022-08-17 14:18:33 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 14:18:33 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 14:18:33 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 14:18:33 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 14:18:33 2022-08-17 14:18:42 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 14:18:42 INFO: Genetic code 11 selected as optimal 2022-08-17 14:18:42 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 14:18:42 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 14:18:42 2022-08-17 14:18:48 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 14:18:52 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 14:18:56 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 14:18:59 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 14:19:02 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 14:19:05 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 14:19:08 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 14:19:10 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 14:19:12 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 14:19:14 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 14:19:14 INFO: Results: C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 2022-08-17 14:19:14 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 | |438 Complete BUSCOs (C) | |436 Complete and single-copy BUSCOs (S) | |2 Complete and duplicated BUSCOs (D) | |1 Fragmented BUSCOs (F) | |1 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 14:19:14 INFO: BUSCO analysis done. Total running time: 42 seconds 2022-08-17 14:19:14 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_carotovorum_A077-S18-O15 2022-08-17 14:19:14 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 14:19:14 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 14:19:15 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 14:19:15 ***** 2022-08-17 14:19:15 INFO: Configuring BUSCO with local environment 2022-08-17 14:19:15 INFO: Mode is genome 2022-08-17 14:19:15 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 14:19:15 INFO: Download connection problem. Retrying in 10 seconds 2022-08-17 14:19:32 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_carotovorum_A280-S2-N16.fna 2022-08-17 14:19:32 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 14:19:32 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 14:19:32 2022-08-17 14:19:33 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 14:19:33 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 14:19:33 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 14:19:33 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 14:19:33 2022-08-17 14:19:40 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 14:19:40 INFO: Genetic code 11 selected as optimal 2022-08-17 14:19:40 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 14:19:40 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 14:19:40 2022-08-17 14:19:46 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 14:19:50 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 14:19:54 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 14:19:57 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 14:20:00 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 14:20:03 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 14:20:06 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 14:20:08 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 14:20:10 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 14:20:11 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 14:20:12 INFO: Results: C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 2022-08-17 14:20:12 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 | |438 Complete BUSCOs (C) | |436 Complete and single-copy BUSCOs (S) | |2 Complete and duplicated BUSCOs (D) | |1 Fragmented BUSCOs (F) | |1 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 14:20:12 INFO: BUSCO analysis done. Total running time: 40 seconds 2022-08-17 14:20:12 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_carotovorum_A280-S2-N16 2022-08-17 14:20:12 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 14:20:12 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 14:20:12 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 14:20:12 ***** 2022-08-17 14:20:12 INFO: Configuring BUSCO with local environment 2022-08-17 14:20:12 INFO: Mode is genome 2022-08-17 14:20:12 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 14:20:29 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_carotovorum_A284-S2-N16.fna 2022-08-17 14:20:29 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 14:20:29 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 14:20:29 2022-08-17 14:20:30 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 14:20:30 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 14:20:30 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 14:20:30 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 14:20:30 2022-08-17 14:20:38 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 14:20:38 INFO: Genetic code 11 selected as optimal 2022-08-17 14:20:38 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 14:20:38 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 14:20:38 2022-08-17 14:20:44 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 14:20:48 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 14:20:52 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 14:20:55 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 14:20:58 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 14:21:01 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 14:21:04 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 14:21:06 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 14:21:08 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 14:21:09 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 14:21:10 INFO: Results: C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 2022-08-17 14:21:10 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 | |438 Complete BUSCOs (C) | |436 Complete and single-copy BUSCOs (S) | |2 Complete and duplicated BUSCOs (D) | |1 Fragmented BUSCOs (F) | |1 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 14:21:10 INFO: BUSCO analysis done. Total running time: 41 seconds 2022-08-17 14:21:10 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_carotovorum_A284-S2-N16 2022-08-17 14:21:10 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 14:21:10 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 14:21:10 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 14:21:10 ***** 2022-08-17 14:21:10 INFO: Configuring BUSCO with local environment 2022-08-17 14:21:10 INFO: Mode is genome 2022-08-17 14:21:10 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 14:21:24 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_carotovorum_A694-S13-N17.fna 2022-08-17 14:21:24 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 14:21:24 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 14:21:24 2022-08-17 14:21:25 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 14:21:25 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 14:21:25 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 14:21:25 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 14:21:25 2022-08-17 14:21:33 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 14:21:33 INFO: Genetic code 11 selected as optimal 2022-08-17 14:21:33 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 14:21:33 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 14:21:33 2022-08-17 14:21:38 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 14:21:43 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 14:21:46 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 14:21:49 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 14:21:52 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 14:21:55 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 14:21:58 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 14:22:00 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 14:22:02 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 14:22:04 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 14:22:04 INFO: Results: C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 2022-08-17 14:22:04 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 | |438 Complete BUSCOs (C) | |436 Complete and single-copy BUSCOs (S) | |2 Complete and duplicated BUSCOs (D) | |1 Fragmented BUSCOs (F) | |1 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 14:22:04 INFO: BUSCO analysis done. Total running time: 40 seconds 2022-08-17 14:22:04 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_carotovorum_A694-S13-N17 2022-08-17 14:22:04 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 14:22:04 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 14:22:04 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 14:22:04 ***** 2022-08-17 14:22:04 INFO: Configuring BUSCO with local environment 2022-08-17 14:22:04 INFO: Mode is genome 2022-08-17 14:22:04 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 14:22:19 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_carotovorum_BF20.fna 2022-08-17 14:22:19 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 14:22:19 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 14:22:19 2022-08-17 14:22:20 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 14:22:20 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 14:22:20 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 14:22:20 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 14:22:20 2022-08-17 14:22:28 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 14:22:28 INFO: Genetic code 11 selected as optimal 2022-08-17 14:22:28 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 14:22:28 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 14:22:28 2022-08-17 14:22:34 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 14:22:38 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 14:22:42 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 14:22:45 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 14:22:48 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 14:22:51 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 14:22:54 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 14:22:56 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 14:22:58 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 14:22:59 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 14:22:59 INFO: Results: C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 2022-08-17 14:22:59 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 | |438 Complete BUSCOs (C) | |436 Complete and single-copy BUSCOs (S) | |2 Complete and duplicated BUSCOs (D) | |1 Fragmented BUSCOs (F) | |1 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 14:22:59 INFO: BUSCO analysis done. Total running time: 40 seconds 2022-08-17 14:22:59 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_carotovorum_BF20 2022-08-17 14:22:59 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 14:22:59 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 14:23:00 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 14:23:00 ***** 2022-08-17 14:23:00 INFO: Configuring BUSCO with local environment 2022-08-17 14:23:00 INFO: Mode is genome 2022-08-17 14:23:00 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 14:23:13 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_carotovorum_BF45.fna 2022-08-17 14:23:13 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 14:23:13 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 14:23:13 2022-08-17 14:23:14 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 14:23:14 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 14:23:14 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 14:23:14 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 14:23:14 2022-08-17 14:23:24 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 14:23:24 INFO: Genetic code 11 selected as optimal 2022-08-17 14:23:24 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 14:23:24 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 14:23:24 2022-08-17 14:23:30 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 14:23:35 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 14:23:38 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 14:23:41 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 14:23:45 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 14:23:47 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 14:23:50 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 14:23:52 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 14:23:54 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 14:23:56 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 14:23:56 INFO: Results: C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 2022-08-17 14:23:56 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 | |438 Complete BUSCOs (C) | |436 Complete and single-copy BUSCOs (S) | |2 Complete and duplicated BUSCOs (D) | |1 Fragmented BUSCOs (F) | |1 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 14:23:56 INFO: BUSCO analysis done. Total running time: 43 seconds 2022-08-17 14:23:56 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_carotovorum_BF45 2022-08-17 14:23:56 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 14:23:56 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 14:23:57 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 14:23:56 ***** 2022-08-17 14:23:57 INFO: Configuring BUSCO with local environment 2022-08-17 14:23:57 INFO: Mode is genome 2022-08-17 14:23:57 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 14:24:09 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_carotovorum_CFBP1402.fna 2022-08-17 14:24:09 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 14:24:09 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 14:24:09 2022-08-17 14:24:10 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 14:24:10 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 14:24:10 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 14:24:10 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 14:24:10 2022-08-17 14:24:19 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 14:24:19 INFO: Genetic code 11 selected as optimal 2022-08-17 14:24:19 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 14:24:19 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 14:24:19 2022-08-17 14:24:25 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 14:24:29 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 14:24:32 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 14:24:36 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 14:24:39 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 14:24:42 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 14:24:44 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 14:24:46 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 14:24:48 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 14:24:50 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 14:24:50 INFO: Results: C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 2022-08-17 14:24:50 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 | |438 Complete BUSCOs (C) | |436 Complete and single-copy BUSCOs (S) | |2 Complete and duplicated BUSCOs (D) | |1 Fragmented BUSCOs (F) | |1 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 14:24:50 INFO: BUSCO analysis done. Total running time: 41 seconds 2022-08-17 14:24:50 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_carotovorum_CFBP1402 2022-08-17 14:24:50 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 14:24:50 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 14:24:51 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 14:24:51 ***** 2022-08-17 14:24:51 INFO: Configuring BUSCO with local environment 2022-08-17 14:24:51 INFO: Mode is genome 2022-08-17 14:24:51 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 14:25:04 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_carotovorum_CFBP6074.fna 2022-08-17 14:25:04 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 14:25:04 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 14:25:04 2022-08-17 14:25:05 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 14:25:05 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 14:25:05 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 14:25:05 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 14:25:05 2022-08-17 14:25:12 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 14:25:12 INFO: Genetic code 11 selected as optimal 2022-08-17 14:25:12 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 14:25:12 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 14:25:12 2022-08-17 14:25:18 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 14:25:22 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 14:25:25 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 14:25:29 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 14:25:32 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 14:25:35 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 14:25:37 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 14:25:39 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 14:25:41 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 14:25:43 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 14:25:43 INFO: Results: C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 2022-08-17 14:25:43 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 | |438 Complete BUSCOs (C) | |436 Complete and single-copy BUSCOs (S) | |2 Complete and duplicated BUSCOs (D) | |1 Fragmented BUSCOs (F) | |1 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 14:25:43 INFO: BUSCO analysis done. Total running time: 39 seconds 2022-08-17 14:25:43 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_carotovorum_CFBP6074 2022-08-17 14:25:43 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 14:25:43 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 14:25:44 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 14:25:44 ***** 2022-08-17 14:25:44 INFO: Configuring BUSCO with local environment 2022-08-17 14:25:44 INFO: Mode is genome 2022-08-17 14:25:44 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 14:25:56 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_carotovorum_CFBP7347.fna 2022-08-17 14:25:56 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 14:25:56 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 14:25:56 2022-08-17 14:25:57 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 14:25:57 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 14:25:57 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 14:25:57 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 14:25:57 2022-08-17 14:26:05 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 14:26:05 INFO: Genetic code 11 selected as optimal 2022-08-17 14:26:05 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 14:26:05 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 14:26:05 2022-08-17 14:26:10 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 14:26:14 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 14:26:17 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 14:26:21 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 14:26:24 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 14:26:27 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 14:26:29 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 14:26:31 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 14:26:33 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 14:26:35 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 14:26:35 INFO: Results: C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 2022-08-17 14:26:36 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 | |438 Complete BUSCOs (C) | |436 Complete and single-copy BUSCOs (S) | |2 Complete and duplicated BUSCOs (D) | |1 Fragmented BUSCOs (F) | |1 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 14:26:36 INFO: BUSCO analysis done. Total running time: 39 seconds 2022-08-17 14:26:36 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_carotovorum_CFBP7347 2022-08-17 14:26:36 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 14:26:36 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 14:26:36 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 14:26:36 ***** 2022-08-17 14:26:36 INFO: Configuring BUSCO with local environment 2022-08-17 14:26:36 INFO: Mode is genome 2022-08-17 14:26:36 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 14:26:49 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_carotovorum_CFBP8734.fna 2022-08-17 14:26:49 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 14:26:49 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 14:26:49 2022-08-17 14:26:50 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 14:26:50 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 14:26:50 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 14:26:50 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 14:26:50 2022-08-17 14:26:57 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 14:26:57 INFO: Genetic code 11 selected as optimal 2022-08-17 14:26:57 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 14:26:57 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 14:26:57 2022-08-17 14:27:03 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 14:27:07 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 14:27:11 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 14:27:14 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 14:27:17 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 14:27:20 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 14:27:23 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 14:27:25 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 14:27:27 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 14:27:29 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 14:27:29 INFO: Results: C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 2022-08-17 14:27:29 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 | |438 Complete BUSCOs (C) | |436 Complete and single-copy BUSCOs (S) | |2 Complete and duplicated BUSCOs (D) | |1 Fragmented BUSCOs (F) | |1 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 14:27:29 INFO: BUSCO analysis done. Total running time: 40 seconds 2022-08-17 14:27:29 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_carotovorum_CFBP8734 2022-08-17 14:27:29 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 14:27:29 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 14:27:29 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 14:27:29 ***** 2022-08-17 14:27:29 INFO: Configuring BUSCO with local environment 2022-08-17 14:27:29 INFO: Mode is genome 2022-08-17 14:27:30 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 14:27:42 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_carotovorum_DSM30168.fna 2022-08-17 14:27:42 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 14:27:42 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 14:27:42 2022-08-17 14:27:43 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 14:27:43 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 14:27:43 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 14:27:43 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 14:27:43 2022-08-17 14:27:51 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 14:27:51 INFO: Genetic code 11 selected as optimal 2022-08-17 14:27:51 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 14:27:51 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 14:27:51 2022-08-17 14:27:57 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 14:28:01 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 14:28:04 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 14:28:08 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 14:28:11 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 14:28:14 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 14:28:16 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 14:28:18 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 14:28:20 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 14:28:22 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 14:28:22 INFO: Results: C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 2022-08-17 14:28:22 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 | |438 Complete BUSCOs (C) | |436 Complete and single-copy BUSCOs (S) | |2 Complete and duplicated BUSCOs (D) | |1 Fragmented BUSCOs (F) | |1 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 14:28:22 INFO: BUSCO analysis done. Total running time: 40 seconds 2022-08-17 14:28:22 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_carotovorum_DSM30168 2022-08-17 14:28:22 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 14:28:22 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 14:28:23 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 14:28:23 ***** 2022-08-17 14:28:23 INFO: Configuring BUSCO with local environment 2022-08-17 14:28:23 INFO: Mode is genome 2022-08-17 14:28:23 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 14:28:36 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_carotovorum_NY1767A.fna 2022-08-17 14:28:36 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 14:28:36 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 14:28:36 2022-08-17 14:28:37 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 14:28:37 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 14:28:37 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 14:28:37 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 14:28:37 2022-08-17 14:28:44 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 14:28:44 INFO: Genetic code 11 selected as optimal 2022-08-17 14:28:44 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 14:28:44 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 14:28:44 2022-08-17 14:28:50 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 14:28:54 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 14:28:57 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 14:29:00 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 14:29:03 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 14:29:06 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 14:29:09 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 14:29:11 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 14:29:13 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 14:29:15 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 14:29:15 INFO: Results: C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 2022-08-17 14:29:15 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 | |438 Complete BUSCOs (C) | |436 Complete and single-copy BUSCOs (S) | |2 Complete and duplicated BUSCOs (D) | |1 Fragmented BUSCOs (F) | |1 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 14:29:15 INFO: BUSCO analysis done. Total running time: 39 seconds 2022-08-17 14:29:15 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_carotovorum_NY1767A 2022-08-17 14:29:15 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 14:29:15 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 14:29:16 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 14:29:16 ***** 2022-08-17 14:29:16 INFO: Configuring BUSCO with local environment 2022-08-17 14:29:16 INFO: Mode is genome 2022-08-17 14:29:16 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 14:29:28 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_carotovorum_NY1786A.fna 2022-08-17 14:29:28 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 14:29:28 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 14:29:28 2022-08-17 14:29:29 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 14:29:29 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 14:29:29 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 14:29:29 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 14:29:29 2022-08-17 14:29:36 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 14:29:37 INFO: Genetic code 11 selected as optimal 2022-08-17 14:29:37 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 14:29:37 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 14:29:37 2022-08-17 14:29:42 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 14:29:46 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 14:29:50 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 14:29:53 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 14:29:56 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 14:29:59 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 14:30:01 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 14:30:03 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 14:30:05 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 14:30:07 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 14:30:07 INFO: Results: C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 2022-08-17 14:30:07 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 | |438 Complete BUSCOs (C) | |436 Complete and single-copy BUSCOs (S) | |2 Complete and duplicated BUSCOs (D) | |1 Fragmented BUSCOs (F) | |1 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 14:30:07 INFO: BUSCO analysis done. Total running time: 39 seconds 2022-08-17 14:30:07 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_carotovorum_NY1786A 2022-08-17 14:30:07 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 14:30:07 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 14:30:08 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 14:30:08 ***** 2022-08-17 14:30:08 INFO: Configuring BUSCO with local environment 2022-08-17 14:30:08 INFO: Mode is genome 2022-08-17 14:30:08 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 14:30:20 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_carotovorum_S1.15.11.2D.fna 2022-08-17 14:30:21 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 14:30:21 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 14:30:21 2022-08-17 14:30:21 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 14:30:22 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 14:30:22 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 14:30:22 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 14:30:22 2022-08-17 14:30:29 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 14:30:29 INFO: Genetic code 11 selected as optimal 2022-08-17 14:30:29 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 14:30:29 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 14:30:29 2022-08-17 14:30:34 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 14:30:38 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 14:30:42 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 14:30:45 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 14:30:48 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 14:30:51 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 14:30:54 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 14:30:56 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 14:30:58 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 14:31:00 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 14:31:00 INFO: Results: C:99.4%[S:98.9%,D:0.5%],F:0.5%,M:0.1%,n:440 2022-08-17 14:31:00 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.4%[S:98.9%,D:0.5%],F:0.5%,M:0.1%,n:440 | |437 Complete BUSCOs (C) | |435 Complete and single-copy BUSCOs (S) | |2 Complete and duplicated BUSCOs (D) | |2 Fragmented BUSCOs (F) | |1 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 14:31:00 INFO: BUSCO analysis done. Total running time: 39 seconds 2022-08-17 14:31:00 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_carotovorum_S1.15.11.2D 2022-08-17 14:31:00 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 14:31:00 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 14:31:00 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 14:31:00 ***** 2022-08-17 14:31:00 INFO: Configuring BUSCO with local environment 2022-08-17 14:31:00 INFO: Mode is genome 2022-08-17 14:31:00 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 14:31:13 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_carotovorum_S1.16.01.3K.fna 2022-08-17 14:31:13 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 14:31:13 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 14:31:13 2022-08-17 14:31:14 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 14:31:14 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 14:31:14 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 14:31:14 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 14:31:14 2022-08-17 14:31:22 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 14:31:22 INFO: Genetic code 11 selected as optimal 2022-08-17 14:31:22 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 14:31:22 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 14:31:22 2022-08-17 14:31:27 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 14:31:31 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 14:31:34 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 14:31:38 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 14:31:41 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 14:31:44 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 14:31:47 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 14:31:49 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 14:31:51 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 14:31:52 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 14:31:52 INFO: Results: C:99.4%[S:98.9%,D:0.5%],F:0.5%,M:0.1%,n:440 2022-08-17 14:31:53 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.4%[S:98.9%,D:0.5%],F:0.5%,M:0.1%,n:440 | |437 Complete BUSCOs (C) | |435 Complete and single-copy BUSCOs (S) | |2 Complete and duplicated BUSCOs (D) | |2 Fragmented BUSCOs (F) | |1 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 14:31:53 INFO: BUSCO analysis done. Total running time: 40 seconds 2022-08-17 14:31:53 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_carotovorum_S1.16.01.3K 2022-08-17 14:31:53 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 14:31:53 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 14:31:53 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 14:31:53 ***** 2022-08-17 14:31:53 INFO: Configuring BUSCO with local environment 2022-08-17 14:31:53 INFO: Mode is genome 2022-08-17 14:31:53 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 14:32:06 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_carotovorum_S1-A16.fna 2022-08-17 14:32:06 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 14:32:06 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 14:32:06 2022-08-17 14:32:07 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 14:32:07 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 14:32:07 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 14:32:07 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 14:32:07 2022-08-17 14:32:14 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 14:32:14 INFO: Genetic code 11 selected as optimal 2022-08-17 14:32:14 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 14:32:14 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 14:32:14 2022-08-17 14:32:20 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 14:32:24 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 14:32:27 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 14:32:31 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 14:32:34 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 14:32:37 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 14:32:40 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 14:32:42 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 14:32:44 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 14:32:45 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 14:32:46 INFO: Results: C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 2022-08-17 14:32:46 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 | |438 Complete BUSCOs (C) | |436 Complete and single-copy BUSCOs (S) | |2 Complete and duplicated BUSCOs (D) | |1 Fragmented BUSCOs (F) | |1 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 14:32:46 INFO: BUSCO analysis done. Total running time: 40 seconds 2022-08-17 14:32:46 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_carotovorum_S1-A16 2022-08-17 14:32:46 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 14:32:46 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 14:32:46 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 14:32:46 ***** 2022-08-17 14:32:46 INFO: Configuring BUSCO with local environment 2022-08-17 14:32:46 INFO: Mode is genome 2022-08-17 14:32:46 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 14:32:59 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_carotovorum_S4.16.03.1C.fna 2022-08-17 14:32:59 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 14:32:59 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 14:32:59 2022-08-17 14:33:00 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 14:33:00 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 14:33:00 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 14:33:00 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 14:33:00 2022-08-17 14:33:07 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 14:33:08 INFO: Genetic code 11 selected as optimal 2022-08-17 14:33:08 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 14:33:08 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 14:33:08 2022-08-17 14:33:13 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 14:33:18 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 14:33:21 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 14:33:24 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 14:33:28 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 14:33:31 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 14:33:33 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 14:33:35 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 14:33:37 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 14:33:39 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 14:33:39 INFO: Results: C:99.4%[S:98.9%,D:0.5%],F:0.5%,M:0.1%,n:440 2022-08-17 14:33:39 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.4%[S:98.9%,D:0.5%],F:0.5%,M:0.1%,n:440 | |437 Complete BUSCOs (C) | |435 Complete and single-copy BUSCOs (S) | |2 Complete and duplicated BUSCOs (D) | |2 Fragmented BUSCOs (F) | |1 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 14:33:39 INFO: BUSCO analysis done. Total running time: 41 seconds 2022-08-17 14:33:39 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_carotovorum_S4.16.03.1C 2022-08-17 14:33:39 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 14:33:39 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 14:33:40 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 14:33:40 ***** 2022-08-17 14:33:40 INFO: Configuring BUSCO with local environment 2022-08-17 14:33:40 INFO: Mode is genome 2022-08-17 14:33:40 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 14:33:53 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_carotovorum_subsp._carotovorum_67.fna 2022-08-17 14:33:53 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 14:33:53 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 14:33:53 2022-08-17 14:33:54 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 14:33:54 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 14:33:54 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 14:33:54 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 14:33:54 2022-08-17 14:34:01 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 14:34:02 INFO: Genetic code 11 selected as optimal 2022-08-17 14:34:02 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 14:34:02 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 14:34:02 2022-08-17 14:34:07 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 14:34:11 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 14:34:15 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 14:34:18 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 14:34:22 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 14:34:25 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 14:34:27 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 14:34:29 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 14:34:31 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 14:34:33 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 14:34:33 INFO: Results: C:89.7%[S:89.5%,D:0.2%],F:7.5%,M:2.8%,n:440 2022-08-17 14:34:33 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:89.7%[S:89.5%,D:0.2%],F:7.5%,M:2.8%,n:440 | |395 Complete BUSCOs (C) | |394 Complete and single-copy BUSCOs (S) | |1 Complete and duplicated BUSCOs (D) | |33 Fragmented BUSCOs (F) | |12 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 14:34:33 INFO: BUSCO analysis done. Total running time: 40 seconds 2022-08-17 14:34:33 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_carotovorum_subsp._carotovorum_67 2022-08-17 14:34:33 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 14:34:33 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 14:34:34 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 14:34:34 ***** 2022-08-17 14:34:34 INFO: Configuring BUSCO with local environment 2022-08-17 14:34:34 INFO: Mode is genome 2022-08-17 14:34:34 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 14:34:46 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_carotovorum_subsp._carotovorum_ATCC39048.fna 2022-08-17 14:34:46 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 14:34:46 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 14:34:46 2022-08-17 14:34:47 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 14:34:47 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 14:34:47 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 14:34:47 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 14:34:47 2022-08-17 14:34:55 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 14:34:55 INFO: Genetic code 11 selected as optimal 2022-08-17 14:34:55 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 14:34:55 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 14:34:55 2022-08-17 14:35:00 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 14:35:04 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 14:35:08 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 14:35:11 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 14:35:14 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 14:35:17 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 14:35:20 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 14:35:21 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 14:35:23 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 14:35:25 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 14:35:25 INFO: Results: C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 2022-08-17 14:35:25 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 | |438 Complete BUSCOs (C) | |436 Complete and single-copy BUSCOs (S) | |2 Complete and duplicated BUSCOs (D) | |1 Fragmented BUSCOs (F) | |1 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 14:35:25 INFO: BUSCO analysis done. Total running time: 39 seconds 2022-08-17 14:35:25 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_carotovorum_subsp._carotovorum_ATCC39048 2022-08-17 14:35:25 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 14:35:25 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 14:35:26 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 14:35:26 ***** 2022-08-17 14:35:26 INFO: Configuring BUSCO with local environment 2022-08-17 14:35:26 INFO: Mode is genome 2022-08-17 14:35:26 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 14:35:38 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_carotovorum_subsp._carotovorum_B2.fna 2022-08-17 14:35:39 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 14:35:39 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 14:35:39 2022-08-17 14:35:40 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 14:35:40 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 14:35:40 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 14:35:40 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 14:35:40 2022-08-17 14:35:47 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 14:35:47 INFO: Genetic code 11 selected as optimal 2022-08-17 14:35:47 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 14:35:47 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 14:35:47 2022-08-17 14:35:52 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 14:35:57 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 14:36:00 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 14:36:04 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 14:36:07 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 14:36:10 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 14:36:12 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 14:36:14 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 14:36:16 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 14:36:18 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 14:36:18 INFO: Results: C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 2022-08-17 14:36:18 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 | |438 Complete BUSCOs (C) | |436 Complete and single-copy BUSCOs (S) | |2 Complete and duplicated BUSCOs (D) | |1 Fragmented BUSCOs (F) | |1 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 14:36:18 INFO: BUSCO analysis done. Total running time: 40 seconds 2022-08-17 14:36:18 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_carotovorum_subsp._carotovorum_B2 2022-08-17 14:36:18 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 14:36:18 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 14:36:19 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 14:36:19 ***** 2022-08-17 14:36:19 INFO: Configuring BUSCO with local environment 2022-08-17 14:36:19 INFO: Mode is genome 2022-08-17 14:36:19 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 14:36:31 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_carotovorum_subsp._carotovorum_B5.fna 2022-08-17 14:36:31 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 14:36:31 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 14:36:31 2022-08-17 14:36:32 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 14:36:32 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 14:36:32 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 14:36:32 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 14:36:32 2022-08-17 14:36:40 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 14:36:41 INFO: Genetic code 11 selected as optimal 2022-08-17 14:36:41 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 14:36:41 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 14:36:41 2022-08-17 14:36:46 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 14:36:51 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 14:36:54 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 14:36:57 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 14:37:01 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 14:37:04 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 14:37:06 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 14:37:08 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 14:37:10 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 14:37:12 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 14:37:12 INFO: Results: C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 2022-08-17 14:37:12 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 | |438 Complete BUSCOs (C) | |436 Complete and single-copy BUSCOs (S) | |2 Complete and duplicated BUSCOs (D) | |1 Fragmented BUSCOs (F) | |1 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 14:37:12 INFO: BUSCO analysis done. Total running time: 41 seconds 2022-08-17 14:37:12 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_carotovorum_subsp._carotovorum_B5 2022-08-17 14:37:12 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 14:37:12 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 14:37:13 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 14:37:13 ***** 2022-08-17 14:37:13 INFO: Configuring BUSCO with local environment 2022-08-17 14:37:13 INFO: Mode is genome 2022-08-17 14:37:13 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 14:37:25 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_carotovorum_subsp._carotovorum_BL-4.fna 2022-08-17 14:37:25 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 14:37:25 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 14:37:25 2022-08-17 14:37:26 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 14:37:26 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 14:37:26 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 14:37:26 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 14:37:26 2022-08-17 14:37:34 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 14:37:34 INFO: Genetic code 11 selected as optimal 2022-08-17 14:37:34 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 14:37:34 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 14:37:34 2022-08-17 14:37:40 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 14:37:44 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 14:37:48 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 14:37:51 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 14:37:54 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 14:37:57 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 14:38:00 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 14:38:02 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 14:38:04 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 14:38:05 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 14:38:06 INFO: Results: C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 2022-08-17 14:38:06 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 | |438 Complete BUSCOs (C) | |436 Complete and single-copy BUSCOs (S) | |2 Complete and duplicated BUSCOs (D) | |1 Fragmented BUSCOs (F) | |1 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 14:38:06 INFO: BUSCO analysis done. Total running time: 40 seconds 2022-08-17 14:38:06 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_carotovorum_subsp._carotovorum_BL-4 2022-08-17 14:38:06 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 14:38:06 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 14:38:06 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 14:38:06 ***** 2022-08-17 14:38:06 INFO: Configuring BUSCO with local environment 2022-08-17 14:38:06 INFO: Mode is genome 2022-08-17 14:38:06 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 14:38:19 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_carotovorum_subsp._carotovorum_BP201601.1.fna 2022-08-17 14:38:19 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 14:38:19 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 14:38:19 2022-08-17 14:38:20 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 14:38:20 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 14:38:20 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 14:38:20 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 14:38:20 2022-08-17 14:38:27 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 14:38:28 INFO: Genetic code 11 selected as optimal 2022-08-17 14:38:28 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 14:38:28 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 14:38:28 2022-08-17 14:38:33 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 14:38:37 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 14:38:41 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 14:38:44 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 14:38:47 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 14:38:50 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 14:38:53 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 14:38:55 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 14:38:57 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 14:38:59 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 14:38:59 INFO: Results: C:98.9%[S:98.4%,D:0.5%],F:0.9%,M:0.2%,n:440 2022-08-17 14:38:59 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:98.9%[S:98.4%,D:0.5%],F:0.9%,M:0.2%,n:440 | |435 Complete BUSCOs (C) | |433 Complete and single-copy BUSCOs (S) | |2 Complete and duplicated BUSCOs (D) | |4 Fragmented BUSCOs (F) | |1 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 14:38:59 INFO: BUSCO analysis done. Total running time: 40 seconds 2022-08-17 14:38:59 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_carotovorum_subsp._carotovorum_BP201601.1 2022-08-17 14:38:59 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 14:38:59 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 14:38:59 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 14:38:59 ***** 2022-08-17 14:38:59 INFO: Configuring BUSCO with local environment 2022-08-17 14:38:59 INFO: Mode is genome 2022-08-17 14:38:59 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 14:39:12 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_carotovorum_subsp._carotovorum_Ecc15.fna 2022-08-17 14:39:12 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 14:39:12 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 14:39:12 2022-08-17 14:39:13 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 14:39:13 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 14:39:13 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 14:39:13 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 14:39:13 2022-08-17 14:39:20 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 14:39:21 INFO: Genetic code 11 selected as optimal 2022-08-17 14:39:21 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 14:39:21 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 14:39:21 2022-08-17 14:39:26 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 14:39:30 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 14:39:34 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 14:39:37 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 14:39:41 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 14:39:44 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 14:39:46 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 14:39:48 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 14:39:50 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 14:39:52 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 14:39:52 INFO: Results: C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 2022-08-17 14:39:52 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 | |438 Complete BUSCOs (C) | |436 Complete and single-copy BUSCOs (S) | |2 Complete and duplicated BUSCOs (D) | |1 Fragmented BUSCOs (F) | |1 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 14:39:52 INFO: BUSCO analysis done. Total running time: 40 seconds 2022-08-17 14:39:52 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_carotovorum_subsp._carotovorum_Ecc15 2022-08-17 14:39:52 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 14:39:52 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 14:39:53 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 14:39:53 ***** 2022-08-17 14:39:53 INFO: Configuring BUSCO with local environment 2022-08-17 14:39:53 INFO: Mode is genome 2022-08-17 14:39:53 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 14:40:05 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_carotovorum_subsp._carotovorum_ICMP_5702_ICMP5702.fna 2022-08-17 14:40:06 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 14:40:06 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 14:40:06 2022-08-17 14:40:07 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 14:40:07 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 14:40:07 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 14:40:07 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 14:40:07 2022-08-17 14:40:14 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 14:40:15 INFO: Genetic code 11 selected as optimal 2022-08-17 14:40:15 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 14:40:15 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 14:40:15 2022-08-17 14:40:20 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 14:40:25 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 14:40:28 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 14:40:32 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 14:40:35 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 14:40:38 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 14:40:40 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 14:40:42 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 14:40:44 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 14:40:46 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 14:40:46 INFO: Results: C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 2022-08-17 14:40:46 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 | |438 Complete BUSCOs (C) | |436 Complete and single-copy BUSCOs (S) | |2 Complete and duplicated BUSCOs (D) | |1 Fragmented BUSCOs (F) | |1 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 14:40:46 INFO: BUSCO analysis done. Total running time: 41 seconds 2022-08-17 14:40:46 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_carotovorum_subsp._carotovorum_ICMP_5702_ICMP5702 2022-08-17 14:40:46 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 14:40:46 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 14:40:47 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 14:40:47 ***** 2022-08-17 14:40:47 INFO: Configuring BUSCO with local environment 2022-08-17 14:40:47 INFO: Mode is genome 2022-08-17 14:40:47 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 14:40:59 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_carotovorum_subsp._carotovorum_JR1.1.fna 2022-08-17 14:41:00 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 14:41:00 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 14:41:00 2022-08-17 14:41:00 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 14:41:00 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 14:41:00 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 14:41:00 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 14:41:00 2022-08-17 14:41:08 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 14:41:08 INFO: Genetic code 11 selected as optimal 2022-08-17 14:41:08 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 14:41:08 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 14:41:08 2022-08-17 14:41:14 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 14:41:18 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 14:41:22 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 14:41:25 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 14:41:29 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 14:41:31 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 14:41:34 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 14:41:36 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 14:41:38 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 14:41:40 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 14:41:40 INFO: Results: C:99.6%[S:98.9%,D:0.7%],F:0.2%,M:0.2%,n:440 2022-08-17 14:41:40 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.6%[S:98.9%,D:0.7%],F:0.2%,M:0.2%,n:440 | |438 Complete BUSCOs (C) | |435 Complete and single-copy BUSCOs (S) | |3 Complete and duplicated BUSCOs (D) | |1 Fragmented BUSCOs (F) | |1 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 14:41:40 INFO: BUSCO analysis done. Total running time: 41 seconds 2022-08-17 14:41:40 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_carotovorum_subsp._carotovorum_JR1.1 2022-08-17 14:41:40 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 14:41:40 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 14:41:41 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 14:41:41 ***** 2022-08-17 14:41:41 INFO: Configuring BUSCO with local environment 2022-08-17 14:41:41 INFO: Mode is genome 2022-08-17 14:41:41 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 14:41:53 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_carotovorum_subsp._carotovorum_LMG2410.fna 2022-08-17 14:41:53 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 14:41:53 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 14:41:53 2022-08-17 14:41:54 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 14:41:54 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 14:41:54 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 14:41:54 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 14:41:54 2022-08-17 14:42:02 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 14:42:02 INFO: Genetic code 11 selected as optimal 2022-08-17 14:42:02 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 14:42:02 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 14:42:02 2022-08-17 14:42:08 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 14:42:12 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 14:42:15 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 14:42:19 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 14:42:22 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 14:42:25 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 14:42:28 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 14:42:29 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 14:42:32 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 14:42:33 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 14:42:33 INFO: Results: C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 2022-08-17 14:42:33 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 | |438 Complete BUSCOs (C) | |436 Complete and single-copy BUSCOs (S) | |2 Complete and duplicated BUSCOs (D) | |1 Fragmented BUSCOs (F) | |1 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 14:42:33 INFO: BUSCO analysis done. Total running time: 40 seconds 2022-08-17 14:42:33 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_carotovorum_subsp._carotovorum_LMG2410 2022-08-17 14:42:33 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 14:42:33 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 14:42:34 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 14:42:34 ***** 2022-08-17 14:42:34 INFO: Configuring BUSCO with local environment 2022-08-17 14:42:34 INFO: Mode is genome 2022-08-17 14:42:34 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 14:42:47 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_carotovorum_subsp._carotovorum_NCPPB312.fna 2022-08-17 14:42:47 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 14:42:47 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 14:42:47 2022-08-17 14:42:48 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 14:42:48 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 14:42:48 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 14:42:48 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 14:42:48 2022-08-17 14:42:56 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 14:42:56 INFO: Genetic code 11 selected as optimal 2022-08-17 14:42:56 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 14:42:56 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 14:42:56 2022-08-17 14:43:01 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 14:43:05 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 14:43:08 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 14:43:12 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 14:43:15 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 14:43:18 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 14:43:20 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 14:43:22 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 14:43:24 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 14:43:26 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 14:43:26 INFO: Results: C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 2022-08-17 14:43:26 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 | |438 Complete BUSCOs (C) | |436 Complete and single-copy BUSCOs (S) | |2 Complete and duplicated BUSCOs (D) | |1 Fragmented BUSCOs (F) | |1 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 14:43:26 INFO: BUSCO analysis done. Total running time: 40 seconds 2022-08-17 14:43:26 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_carotovorum_subsp._carotovorum_NCPPB312 2022-08-17 14:43:26 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 14:43:26 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 14:43:27 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 14:43:27 ***** 2022-08-17 14:43:27 INFO: Configuring BUSCO with local environment 2022-08-17 14:43:27 INFO: Mode is genome 2022-08-17 14:43:27 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 14:43:40 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_carotovorum_subsp._carotovorum_PC1_PC1.fna 2022-08-17 14:43:40 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 14:43:40 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 14:43:40 2022-08-17 14:43:41 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 14:43:41 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 14:43:41 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 14:43:41 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 14:43:41 2022-08-17 14:43:49 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 14:43:49 INFO: Genetic code 11 selected as optimal 2022-08-17 14:43:49 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 14:43:49 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 14:43:49 2022-08-17 14:43:54 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 14:43:58 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 14:44:02 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 14:44:05 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 14:44:08 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 14:44:11 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 14:44:14 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 14:44:16 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 14:44:18 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 14:44:20 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 14:44:20 INFO: Results: C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 2022-08-17 14:44:20 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 | |438 Complete BUSCOs (C) | |436 Complete and single-copy BUSCOs (S) | |2 Complete and duplicated BUSCOs (D) | |1 Fragmented BUSCOs (F) | |1 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 14:44:20 INFO: BUSCO analysis done. Total running time: 40 seconds 2022-08-17 14:44:20 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_carotovorum_subsp._carotovorum_PC1_PC1 2022-08-17 14:44:20 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 14:44:20 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 14:44:20 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 14:44:20 ***** 2022-08-17 14:44:20 INFO: Configuring BUSCO with local environment 2022-08-17 14:44:20 INFO: Mode is genome 2022-08-17 14:44:20 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 14:44:33 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_carotovorum_subsp._carotovorum_PCC21_PCC21.fna 2022-08-17 14:44:33 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 14:44:33 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 14:44:33 2022-08-17 14:44:34 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 14:44:34 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 14:44:34 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 14:44:34 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 14:44:34 2022-08-17 14:44:42 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 14:44:42 INFO: Genetic code 11 selected as optimal 2022-08-17 14:44:42 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 14:44:42 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 14:44:42 2022-08-17 14:44:47 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 14:44:52 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 14:44:55 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 14:44:59 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 14:45:02 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 14:45:05 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 14:45:07 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 14:45:09 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 14:45:11 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 14:45:13 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 14:45:13 INFO: Results: C:99.1%[S:98.6%,D:0.5%],F:0.7%,M:0.2%,n:440 2022-08-17 14:45:13 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.1%[S:98.6%,D:0.5%],F:0.7%,M:0.2%,n:440 | |436 Complete BUSCOs (C) | |434 Complete and single-copy BUSCOs (S) | |2 Complete and duplicated BUSCOs (D) | |3 Fragmented BUSCOs (F) | |1 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 14:45:13 INFO: BUSCO analysis done. Total running time: 40 seconds 2022-08-17 14:45:13 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_carotovorum_subsp._carotovorum_PCC21_PCC21 2022-08-17 14:45:13 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 14:45:13 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 14:45:14 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 14:45:14 ***** 2022-08-17 14:45:14 INFO: Configuring BUSCO with local environment 2022-08-17 14:45:14 INFO: Mode is genome 2022-08-17 14:45:14 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 14:45:27 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_carotovorum_subsp._carotovorum_PCCS1_PCCS1.fna 2022-08-17 14:45:27 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 14:45:27 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 14:45:27 2022-08-17 14:45:28 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 14:45:28 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 14:45:28 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 14:45:28 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 14:45:28 2022-08-17 14:45:35 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 14:45:36 INFO: Genetic code 11 selected as optimal 2022-08-17 14:45:36 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 14:45:36 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 14:45:36 2022-08-17 14:45:41 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 14:45:45 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 14:45:49 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 14:45:52 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 14:45:55 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 14:45:58 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 14:46:01 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 14:46:03 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 14:46:05 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 14:46:07 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 14:46:07 INFO: Results: C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 2022-08-17 14:46:07 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 | |438 Complete BUSCOs (C) | |436 Complete and single-copy BUSCOs (S) | |2 Complete and duplicated BUSCOs (D) | |1 Fragmented BUSCOs (F) | |1 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 14:46:07 INFO: BUSCO analysis done. Total running time: 40 seconds 2022-08-17 14:46:07 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_carotovorum_subsp._carotovorum_PCCS1_PCCS1 2022-08-17 14:46:07 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 14:46:07 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 14:46:07 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 14:46:07 ***** 2022-08-17 14:46:07 INFO: Configuring BUSCO with local environment 2022-08-17 14:46:07 INFO: Mode is genome 2022-08-17 14:46:07 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 14:46:20 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_carotovorum_subsp._carotovorum_WPP14_WPP14.fna 2022-08-17 14:46:20 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 14:46:20 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 14:46:20 2022-08-17 14:46:21 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 14:46:21 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 14:46:21 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 14:46:21 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 14:46:21 2022-08-17 14:46:28 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 14:46:28 INFO: Genetic code 11 selected as optimal 2022-08-17 14:46:28 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 14:46:28 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 14:46:28 2022-08-17 14:46:33 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 14:46:37 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 14:46:41 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 14:46:44 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 14:46:47 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 14:46:50 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 14:46:53 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 14:46:55 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 14:46:57 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 14:46:58 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 14:46:58 INFO: Results: C:93.2%[S:92.7%,D:0.5%],F:5.0%,M:1.8%,n:440 2022-08-17 14:46:58 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:93.2%[S:92.7%,D:0.5%],F:5.0%,M:1.8%,n:440 | |410 Complete BUSCOs (C) | |408 Complete and single-copy BUSCOs (S) | |2 Complete and duplicated BUSCOs (D) | |22 Fragmented BUSCOs (F) | |8 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 14:46:58 INFO: BUSCO analysis done. Total running time: 39 seconds 2022-08-17 14:46:58 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_carotovorum_subsp._carotovorum_WPP14_WPP14 2022-08-17 14:46:58 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 14:46:58 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 14:46:59 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 14:46:59 ***** 2022-08-17 14:46:59 INFO: Configuring BUSCO with local environment 2022-08-17 14:46:59 INFO: Mode is genome 2022-08-17 14:46:59 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 14:47:12 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_carotovorum_subsp._carotovorum_Y16.fna 2022-08-17 14:47:12 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 14:47:12 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 14:47:12 2022-08-17 14:47:13 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 14:47:13 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 14:47:13 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 14:47:13 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 14:47:13 2022-08-17 14:47:20 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 14:47:20 INFO: Genetic code 11 selected as optimal 2022-08-17 14:47:20 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 14:47:20 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 14:47:20 2022-08-17 14:47:25 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 14:47:29 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 14:47:32 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 14:47:36 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 14:47:39 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 14:47:42 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 14:47:44 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 14:47:46 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 14:47:48 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 14:47:50 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 14:47:50 INFO: Results: C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 2022-08-17 14:47:50 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 | |438 Complete BUSCOs (C) | |436 Complete and single-copy BUSCOs (S) | |2 Complete and duplicated BUSCOs (D) | |1 Fragmented BUSCOs (F) | |1 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 14:47:50 INFO: BUSCO analysis done. Total running time: 39 seconds 2022-08-17 14:47:50 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_carotovorum_subsp._carotovorum_Y16 2022-08-17 14:47:50 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 14:47:50 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 14:47:51 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 14:47:51 ***** 2022-08-17 14:47:51 INFO: Configuring BUSCO with local environment 2022-08-17 14:47:51 INFO: Mode is genome 2022-08-17 14:47:51 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 14:48:03 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_carotovorum_subsp._carotovorum_Y39.fna 2022-08-17 14:48:04 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 14:48:04 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 14:48:04 2022-08-17 14:48:05 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 14:48:05 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 14:48:05 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 14:48:05 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 14:48:05 2022-08-17 14:48:13 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 14:48:13 INFO: Genetic code 11 selected as optimal 2022-08-17 14:48:13 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 14:48:13 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 14:48:13 2022-08-17 14:48:18 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 14:48:23 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 14:48:26 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 14:48:29 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 14:48:33 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 14:48:36 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 14:48:38 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 14:48:40 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 14:48:42 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 14:48:44 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 14:48:44 INFO: Results: C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 2022-08-17 14:48:44 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 | |438 Complete BUSCOs (C) | |436 Complete and single-copy BUSCOs (S) | |2 Complete and duplicated BUSCOs (D) | |1 Fragmented BUSCOs (F) | |1 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 14:48:44 INFO: BUSCO analysis done. Total running time: 41 seconds 2022-08-17 14:48:44 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_carotovorum_subsp._carotovorum_Y39 2022-08-17 14:48:44 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 14:48:44 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 14:48:45 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 14:48:45 ***** 2022-08-17 14:48:45 INFO: Configuring BUSCO with local environment 2022-08-17 14:48:45 INFO: Mode is genome 2022-08-17 14:48:45 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 14:48:58 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_carotovorum_subsp._carotovorum_Y57.fna 2022-08-17 14:48:58 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 14:48:58 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 14:48:58 2022-08-17 14:48:59 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 14:48:59 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 14:48:59 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 14:48:59 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 14:48:59 2022-08-17 14:49:07 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 14:49:07 INFO: Genetic code 11 selected as optimal 2022-08-17 14:49:07 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 14:49:07 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 14:49:07 2022-08-17 14:49:12 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 14:49:16 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 14:49:19 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 14:49:23 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 14:49:26 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 14:49:29 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 14:49:31 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 14:49:33 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 14:49:35 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 14:49:37 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 14:49:37 INFO: Results: C:97.3%[S:96.8%,D:0.5%],F:0.2%,M:2.5%,n:440 2022-08-17 14:49:37 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:97.3%[S:96.8%,D:0.5%],F:0.2%,M:2.5%,n:440 | |428 Complete BUSCOs (C) | |426 Complete and single-copy BUSCOs (S) | |2 Complete and duplicated BUSCOs (D) | |1 Fragmented BUSCOs (F) | |11 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 14:49:37 INFO: BUSCO analysis done. Total running time: 40 seconds 2022-08-17 14:49:37 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_carotovorum_subsp._carotovorum_Y57 2022-08-17 14:49:37 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 14:49:37 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 14:49:38 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 14:49:38 ***** 2022-08-17 14:49:38 INFO: Configuring BUSCO with local environment 2022-08-17 14:49:38 INFO: Mode is genome 2022-08-17 14:49:38 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 14:49:50 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_carotovorum_WPP14.fna 2022-08-17 14:49:51 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 14:49:51 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 14:49:51 2022-08-17 14:49:51 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 14:49:51 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 14:49:51 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 14:49:51 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 14:49:51 2022-08-17 14:50:00 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 14:50:00 INFO: Genetic code 11 selected as optimal 2022-08-17 14:50:00 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 14:50:00 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 14:50:00 2022-08-17 14:50:05 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 14:50:10 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 14:50:13 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 14:50:17 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 14:50:20 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 14:50:23 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 14:50:25 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 14:50:27 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 14:50:29 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 14:50:31 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 14:50:31 INFO: Results: C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 2022-08-17 14:50:31 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 | |438 Complete BUSCOs (C) | |436 Complete and single-copy BUSCOs (S) | |2 Complete and duplicated BUSCOs (D) | |1 Fragmented BUSCOs (F) | |1 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 14:50:31 INFO: BUSCO analysis done. Total running time: 41 seconds 2022-08-17 14:50:31 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_carotovorum_WPP14 2022-08-17 14:50:31 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 14:50:31 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 14:50:32 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 14:50:32 ***** 2022-08-17 14:50:32 INFO: Configuring BUSCO with local environment 2022-08-17 14:50:32 INFO: Mode is genome 2022-08-17 14:50:32 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 14:50:45 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_carotovorum_XP-13.fna 2022-08-17 14:50:45 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 14:50:45 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 14:50:45 2022-08-17 14:50:45 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 14:50:46 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 14:50:46 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 14:50:46 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 14:50:46 2022-08-17 14:50:53 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 14:50:53 INFO: Genetic code 11 selected as optimal 2022-08-17 14:50:53 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 14:50:53 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 14:50:53 2022-08-17 14:50:59 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 14:51:03 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 14:51:06 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 14:51:10 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 14:51:13 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 14:51:16 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 14:51:18 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 14:51:20 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 14:51:22 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 14:51:24 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 14:51:24 INFO: Results: C:98.9%[S:98.4%,D:0.5%],F:0.7%,M:0.4%,n:440 2022-08-17 14:51:24 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:98.9%[S:98.4%,D:0.5%],F:0.7%,M:0.4%,n:440 | |435 Complete BUSCOs (C) | |433 Complete and single-copy BUSCOs (S) | |2 Complete and duplicated BUSCOs (D) | |3 Fragmented BUSCOs (F) | |2 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 14:51:24 INFO: BUSCO analysis done. Total running time: 40 seconds 2022-08-17 14:51:24 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_carotovorum_XP-13 2022-08-17 14:51:24 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 14:51:24 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 14:51:25 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 14:51:25 ***** 2022-08-17 14:51:25 INFO: Configuring BUSCO with local environment 2022-08-17 14:51:25 INFO: Mode is genome 2022-08-17 14:51:25 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 14:51:37 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_fontis_M022.fna 2022-08-17 14:51:38 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 14:51:38 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 14:51:38 2022-08-17 14:51:38 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 14:51:38 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 14:51:38 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 14:51:38 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 14:51:38 2022-08-17 14:51:45 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 14:51:45 INFO: Genetic code 11 selected as optimal 2022-08-17 14:51:45 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 14:51:45 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 14:51:45 2022-08-17 14:51:50 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 14:51:54 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 14:51:57 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 14:52:01 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 14:52:04 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 14:52:06 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 14:52:09 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 14:52:11 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 14:52:13 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 14:52:14 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 14:52:14 INFO: Results: C:99.8%[S:99.1%,D:0.7%],F:0.2%,M:0.0%,n:440 2022-08-17 14:52:15 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.8%[S:99.1%,D:0.7%],F:0.2%,M:0.0%,n:440 | |439 Complete BUSCOs (C) | |436 Complete and single-copy BUSCOs (S) | |3 Complete and duplicated BUSCOs (D) | |1 Fragmented BUSCOs (F) | |0 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 14:52:15 INFO: BUSCO analysis done. Total running time: 37 seconds 2022-08-17 14:52:15 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_fontis_M022 2022-08-17 14:52:15 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 14:52:15 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 14:52:15 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 14:52:15 ***** 2022-08-17 14:52:15 INFO: Configuring BUSCO with local environment 2022-08-17 14:52:15 INFO: Mode is genome 2022-08-17 14:52:15 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 14:52:28 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_odoriferum_A367-S5-N16.fna 2022-08-17 14:52:28 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 14:52:28 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 14:52:28 2022-08-17 14:52:29 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 14:52:29 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 14:52:29 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 14:52:29 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 14:52:29 2022-08-17 14:52:36 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 14:52:37 INFO: Genetic code 11 selected as optimal 2022-08-17 14:52:37 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 14:52:37 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 14:52:37 2022-08-17 14:52:42 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 14:52:47 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 14:52:50 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 14:52:53 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 14:52:57 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 14:53:00 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 14:53:02 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 14:53:04 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 14:53:06 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 14:53:08 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 14:53:08 INFO: Results: C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 2022-08-17 14:53:08 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 | |438 Complete BUSCOs (C) | |436 Complete and single-copy BUSCOs (S) | |2 Complete and duplicated BUSCOs (D) | |1 Fragmented BUSCOs (F) | |1 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 14:53:08 INFO: BUSCO analysis done. Total running time: 40 seconds 2022-08-17 14:53:08 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_odoriferum_A367-S5-N16 2022-08-17 14:53:08 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 14:53:08 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 14:53:09 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 14:53:09 ***** 2022-08-17 14:53:09 INFO: Configuring BUSCO with local environment 2022-08-17 14:53:09 INFO: Mode is genome 2022-08-17 14:53:09 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 14:53:21 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_odoriferum_BCS7.fna 2022-08-17 14:53:22 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 14:53:22 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 14:53:22 2022-08-17 14:53:22 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 14:53:22 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 14:53:22 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 14:53:22 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 14:53:22 2022-08-17 14:53:30 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 14:53:30 INFO: Genetic code 11 selected as optimal 2022-08-17 14:53:30 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 14:53:30 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 14:53:30 2022-08-17 14:53:36 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 14:53:40 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 14:53:44 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 14:53:47 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 14:53:50 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 14:53:53 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 14:53:56 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 14:53:58 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 14:54:00 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 14:54:02 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 14:54:02 INFO: Results: C:97.8%[S:97.3%,D:0.5%],F:1.8%,M:0.4%,n:440 2022-08-17 14:54:02 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:97.8%[S:97.3%,D:0.5%],F:1.8%,M:0.4%,n:440 | |430 Complete BUSCOs (C) | |428 Complete and single-copy BUSCOs (S) | |2 Complete and duplicated BUSCOs (D) | |8 Fragmented BUSCOs (F) | |2 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 14:54:02 INFO: BUSCO analysis done. Total running time: 41 seconds 2022-08-17 14:54:02 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_odoriferum_BCS7 2022-08-17 14:54:02 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 14:54:02 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 14:54:03 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 14:54:03 ***** 2022-08-17 14:54:03 INFO: Configuring BUSCO with local environment 2022-08-17 14:54:03 INFO: Mode is genome 2022-08-17 14:54:03 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 14:54:15 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_odoriferum_CFBP8735.fna 2022-08-17 14:54:16 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 14:54:16 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 14:54:15 2022-08-17 14:54:16 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 14:54:16 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 14:54:16 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 14:54:16 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 14:54:16 2022-08-17 14:54:24 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 14:54:24 INFO: Genetic code 11 selected as optimal 2022-08-17 14:54:24 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 14:54:24 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 14:54:24 2022-08-17 14:54:30 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 14:54:34 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 14:54:37 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 14:54:41 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 14:54:44 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 14:54:47 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 14:54:49 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 14:54:51 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 14:54:54 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 14:54:55 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 14:54:55 INFO: Results: C:99.5%[S:99.3%,D:0.2%],F:0.2%,M:0.3%,n:440 2022-08-17 14:54:55 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.5%[S:99.3%,D:0.2%],F:0.2%,M:0.3%,n:440 | |438 Complete BUSCOs (C) | |437 Complete and single-copy BUSCOs (S) | |1 Complete and duplicated BUSCOs (D) | |1 Fragmented BUSCOs (F) | |1 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 14:54:55 INFO: BUSCO analysis done. Total running time: 40 seconds 2022-08-17 14:54:55 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_odoriferum_CFBP8735 2022-08-17 14:54:55 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 14:54:55 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 14:54:56 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 14:54:56 ***** 2022-08-17 14:54:56 INFO: Configuring BUSCO with local environment 2022-08-17 14:54:56 INFO: Mode is genome 2022-08-17 14:54:56 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 14:55:09 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_odoriferum_JK2.1.fna 2022-08-17 14:55:09 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 14:55:09 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 14:55:09 2022-08-17 14:55:10 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 14:55:10 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 14:55:10 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 14:55:10 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 14:55:10 2022-08-17 14:55:18 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 14:55:18 INFO: Genetic code 11 selected as optimal 2022-08-17 14:55:18 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 14:55:18 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 14:55:18 2022-08-17 14:55:23 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 14:55:28 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 14:55:31 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 14:55:35 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 14:55:38 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 14:55:41 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 14:55:44 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 14:55:46 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 14:55:48 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 14:55:50 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 14:55:50 INFO: Results: C:98.5%[S:98.0%,D:0.5%],F:0.9%,M:0.6%,n:440 2022-08-17 14:55:50 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:98.5%[S:98.0%,D:0.5%],F:0.9%,M:0.6%,n:440 | |433 Complete BUSCOs (C) | |431 Complete and single-copy BUSCOs (S) | |2 Complete and duplicated BUSCOs (D) | |4 Fragmented BUSCOs (F) | |3 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 14:55:50 INFO: BUSCO analysis done. Total running time: 41 seconds 2022-08-17 14:55:50 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_odoriferum_JK2.1 2022-08-17 14:55:50 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 14:55:50 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 14:55:50 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 14:55:50 ***** 2022-08-17 14:55:50 INFO: Configuring BUSCO with local environment 2022-08-17 14:55:50 INFO: Mode is genome 2022-08-17 14:55:50 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 14:56:03 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_odoriferum_NCPPB3839.fna 2022-08-17 14:56:03 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 14:56:03 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 14:56:03 2022-08-17 14:56:04 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 14:56:04 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 14:56:04 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 14:56:04 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 14:56:04 2022-08-17 14:56:12 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 14:56:12 INFO: Genetic code 11 selected as optimal 2022-08-17 14:56:12 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 14:56:12 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 14:56:12 2022-08-17 14:56:18 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 14:56:22 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 14:56:25 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 14:56:29 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 14:56:32 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 14:56:35 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 14:56:38 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 14:56:40 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 14:56:42 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 14:56:43 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 14:56:44 INFO: Results: C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 2022-08-17 14:56:44 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 | |438 Complete BUSCOs (C) | |436 Complete and single-copy BUSCOs (S) | |2 Complete and duplicated BUSCOs (D) | |1 Fragmented BUSCOs (F) | |1 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 14:56:44 INFO: BUSCO analysis done. Total running time: 41 seconds 2022-08-17 14:56:44 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_odoriferum_NCPPB3839 2022-08-17 14:56:44 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 14:56:44 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 14:56:44 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 14:56:44 ***** 2022-08-17 14:56:44 INFO: Configuring BUSCO with local environment 2022-08-17 14:56:44 INFO: Mode is genome 2022-08-17 14:56:44 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 14:56:57 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_odoriferum_NCPPB3841.fna 2022-08-17 14:56:57 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 14:56:57 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 14:56:57 2022-08-17 14:56:58 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 14:56:58 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 14:56:58 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 14:56:58 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 14:56:58 2022-08-17 14:57:06 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 14:57:06 INFO: Genetic code 11 selected as optimal 2022-08-17 14:57:06 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 14:57:06 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 14:57:06 2022-08-17 14:57:12 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 14:57:17 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 14:57:21 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 14:57:24 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 14:57:27 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 14:57:30 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 14:57:33 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 14:57:35 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 14:57:37 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 14:57:39 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 14:57:39 INFO: Results: C:99.5%[S:98.6%,D:0.9%],F:0.2%,M:0.3%,n:440 2022-08-17 14:57:39 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.5%[S:98.6%,D:0.9%],F:0.2%,M:0.3%,n:440 | |438 Complete BUSCOs (C) | |434 Complete and single-copy BUSCOs (S) | |4 Complete and duplicated BUSCOs (D) | |1 Fragmented BUSCOs (F) | |1 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 14:57:39 INFO: BUSCO analysis done. Total running time: 42 seconds 2022-08-17 14:57:39 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_odoriferum_NCPPB3841 2022-08-17 14:57:39 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 14:57:39 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 14:57:40 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 14:57:40 ***** 2022-08-17 14:57:40 INFO: Configuring BUSCO with local environment 2022-08-17 14:57:40 INFO: Mode is genome 2022-08-17 14:57:40 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 14:57:52 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_odoriferum_Q106.fna 2022-08-17 14:57:52 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 14:57:52 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 14:57:52 2022-08-17 14:57:53 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 14:57:53 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 14:57:53 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 14:57:53 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 14:57:53 2022-08-17 14:58:01 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 14:58:01 INFO: Genetic code 11 selected as optimal 2022-08-17 14:58:01 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 14:58:01 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 14:58:01 2022-08-17 14:58:06 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 14:58:10 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 14:58:14 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 14:58:17 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 14:58:21 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 14:58:23 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 14:58:26 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 14:58:28 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 14:58:30 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 14:58:32 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 14:58:32 INFO: Results: C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 2022-08-17 14:58:32 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 | |438 Complete BUSCOs (C) | |436 Complete and single-copy BUSCOs (S) | |2 Complete and duplicated BUSCOs (D) | |1 Fragmented BUSCOs (F) | |1 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 14:58:32 INFO: BUSCO analysis done. Total running time: 40 seconds 2022-08-17 14:58:32 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_odoriferum_Q106 2022-08-17 14:58:32 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 14:58:32 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 14:58:33 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 14:58:33 ***** 2022-08-17 14:58:33 INFO: Configuring BUSCO with local environment 2022-08-17 14:58:33 INFO: Mode is genome 2022-08-17 14:58:33 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 14:58:45 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_odoriferum_Q115.fna 2022-08-17 14:58:45 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 14:58:45 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 14:58:45 2022-08-17 14:58:46 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 14:58:46 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 14:58:46 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 14:58:46 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 14:58:46 2022-08-17 14:58:54 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 14:58:55 INFO: Genetic code 11 selected as optimal 2022-08-17 14:58:55 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 14:58:55 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 14:58:55 2022-08-17 14:59:00 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 14:59:04 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 14:59:08 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 14:59:12 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 14:59:15 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 14:59:18 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 14:59:20 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 14:59:22 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 14:59:25 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 14:59:26 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 14:59:26 INFO: Results: C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 2022-08-17 14:59:27 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 | |438 Complete BUSCOs (C) | |436 Complete and single-copy BUSCOs (S) | |2 Complete and duplicated BUSCOs (D) | |1 Fragmented BUSCOs (F) | |1 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 14:59:27 INFO: BUSCO analysis done. Total running time: 41 seconds 2022-08-17 14:59:27 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_odoriferum_Q115 2022-08-17 14:59:27 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 14:59:27 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 14:59:27 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 14:59:27 ***** 2022-08-17 14:59:27 INFO: Configuring BUSCO with local environment 2022-08-17 14:59:27 INFO: Mode is genome 2022-08-17 14:59:27 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 14:59:40 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_odoriferum_Q142.fna 2022-08-17 14:59:40 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 14:59:40 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 14:59:40 2022-08-17 14:59:41 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 14:59:41 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 14:59:41 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 14:59:41 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 14:59:41 2022-08-17 14:59:49 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 14:59:49 INFO: Genetic code 11 selected as optimal 2022-08-17 14:59:49 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 14:59:49 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 14:59:49 2022-08-17 14:59:55 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 14:59:59 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 15:00:02 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 15:00:06 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 15:00:09 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 15:00:12 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 15:00:15 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 15:00:17 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 15:00:19 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 15:00:21 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 15:00:21 INFO: Results: C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 2022-08-17 15:00:21 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 | |438 Complete BUSCOs (C) | |436 Complete and single-copy BUSCOs (S) | |2 Complete and duplicated BUSCOs (D) | |1 Fragmented BUSCOs (F) | |1 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 15:00:21 INFO: BUSCO analysis done. Total running time: 41 seconds 2022-08-17 15:00:21 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_odoriferum_Q142 2022-08-17 15:00:21 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 15:00:21 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 15:00:22 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 15:00:22 ***** 2022-08-17 15:00:22 INFO: Configuring BUSCO with local environment 2022-08-17 15:00:22 INFO: Mode is genome 2022-08-17 15:00:22 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 15:00:34 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_odoriferum_Q166.fna 2022-08-17 15:00:34 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 15:00:34 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 15:00:34 2022-08-17 15:00:35 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 15:00:35 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 15:00:35 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 15:00:35 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 15:00:35 2022-08-17 15:00:43 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 15:00:44 INFO: Genetic code 11 selected as optimal 2022-08-17 15:00:44 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 15:00:44 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 15:00:44 2022-08-17 15:00:49 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 15:00:53 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 15:00:57 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 15:01:00 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 15:01:03 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 15:01:06 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 15:01:09 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 15:01:11 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 15:01:13 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 15:01:15 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 15:01:15 INFO: Results: C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 2022-08-17 15:01:15 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 | |438 Complete BUSCOs (C) | |436 Complete and single-copy BUSCOs (S) | |2 Complete and duplicated BUSCOs (D) | |1 Fragmented BUSCOs (F) | |1 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 15:01:15 INFO: BUSCO analysis done. Total running time: 41 seconds 2022-08-17 15:01:15 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_odoriferum_Q166 2022-08-17 15:01:15 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 15:01:15 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 15:01:16 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 15:01:16 ***** 2022-08-17 15:01:16 INFO: Configuring BUSCO with local environment 2022-08-17 15:01:16 INFO: Mode is genome 2022-08-17 15:01:16 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 15:01:28 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_odoriferum_Q32.fna 2022-08-17 15:01:29 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 15:01:29 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 15:01:29 2022-08-17 15:01:30 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 15:01:30 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 15:01:30 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 15:01:30 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 15:01:30 2022-08-17 15:01:37 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 15:01:38 INFO: Genetic code 11 selected as optimal 2022-08-17 15:01:38 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 15:01:38 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 15:01:38 2022-08-17 15:01:43 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 15:01:47 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 15:01:50 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 15:01:53 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 15:01:56 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 15:01:59 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 15:02:02 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 15:02:04 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 15:02:06 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 15:02:07 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 15:02:08 INFO: Results: C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 2022-08-17 15:02:08 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 | |438 Complete BUSCOs (C) | |436 Complete and single-copy BUSCOs (S) | |2 Complete and duplicated BUSCOs (D) | |1 Fragmented BUSCOs (F) | |1 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 15:02:08 INFO: BUSCO analysis done. Total running time: 39 seconds 2022-08-17 15:02:08 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_odoriferum_Q32 2022-08-17 15:02:08 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 15:02:08 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 15:02:08 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 15:02:08 ***** 2022-08-17 15:02:08 INFO: Configuring BUSCO with local environment 2022-08-17 15:02:08 INFO: Mode is genome 2022-08-17 15:02:08 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 15:02:21 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_odoriferum_Q3.fna 2022-08-17 15:02:21 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 15:02:21 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 15:02:21 2022-08-17 15:02:22 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 15:02:22 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 15:02:22 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 15:02:22 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 15:02:22 2022-08-17 15:02:30 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 15:02:30 INFO: Genetic code 11 selected as optimal 2022-08-17 15:02:30 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 15:02:30 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 15:02:30 2022-08-17 15:02:35 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 15:02:40 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 15:02:43 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 15:02:47 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 15:02:50 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 15:02:53 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 15:02:56 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 15:02:58 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 15:03:00 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 15:03:01 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 15:03:01 INFO: Results: C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 2022-08-17 15:03:02 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 | |438 Complete BUSCOs (C) | |436 Complete and single-copy BUSCOs (S) | |2 Complete and duplicated BUSCOs (D) | |1 Fragmented BUSCOs (F) | |1 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 15:03:02 INFO: BUSCO analysis done. Total running time: 41 seconds 2022-08-17 15:03:02 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_odoriferum_Q3 2022-08-17 15:03:02 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 15:03:02 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 15:03:02 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 15:03:02 ***** 2022-08-17 15:03:02 INFO: Configuring BUSCO with local environment 2022-08-17 15:03:02 INFO: Mode is genome 2022-08-17 15:03:02 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 15:03:15 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_odoriferum_Q40.fna 2022-08-17 15:03:15 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 15:03:15 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 15:03:15 2022-08-17 15:03:16 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 15:03:16 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 15:03:16 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 15:03:16 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 15:03:16 2022-08-17 15:03:24 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 15:03:24 INFO: Genetic code 11 selected as optimal 2022-08-17 15:03:24 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 15:03:24 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 15:03:24 2022-08-17 15:03:30 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 15:03:34 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 15:03:37 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 15:03:41 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 15:03:44 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 15:03:47 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 15:03:50 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 15:03:52 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 15:03:54 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 15:03:56 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 15:03:56 INFO: Results: C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 2022-08-17 15:03:56 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 | |438 Complete BUSCOs (C) | |436 Complete and single-copy BUSCOs (S) | |2 Complete and duplicated BUSCOs (D) | |1 Fragmented BUSCOs (F) | |1 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 15:03:56 INFO: BUSCO analysis done. Total running time: 41 seconds 2022-08-17 15:03:56 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_odoriferum_Q40 2022-08-17 15:03:56 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 15:03:56 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 15:03:57 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 15:03:57 ***** 2022-08-17 15:03:57 INFO: Configuring BUSCO with local environment 2022-08-17 15:03:57 INFO: Mode is genome 2022-08-17 15:03:57 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 15:04:09 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_odoriferum_Q47.fna 2022-08-17 15:04:09 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 15:04:09 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 15:04:09 2022-08-17 15:04:10 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 15:04:10 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 15:04:10 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 15:04:10 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 15:04:10 2022-08-17 15:04:18 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 15:04:18 INFO: Genetic code 11 selected as optimal 2022-08-17 15:04:18 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 15:04:18 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 15:04:18 2022-08-17 15:04:24 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 15:04:28 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 15:04:32 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 15:04:35 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 15:04:38 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 15:04:41 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 15:04:44 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 15:04:46 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 15:04:48 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 15:04:50 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 15:04:50 INFO: Results: C:99.4%[S:98.9%,D:0.5%],F:0.2%,M:0.4%,n:440 2022-08-17 15:04:50 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.4%[S:98.9%,D:0.5%],F:0.2%,M:0.4%,n:440 | |437 Complete BUSCOs (C) | |435 Complete and single-copy BUSCOs (S) | |2 Complete and duplicated BUSCOs (D) | |1 Fragmented BUSCOs (F) | |2 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 15:04:50 INFO: BUSCO analysis done. Total running time: 41 seconds 2022-08-17 15:04:50 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_odoriferum_Q47 2022-08-17 15:04:50 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 15:04:50 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 15:04:50 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 15:04:50 ***** 2022-08-17 15:04:50 INFO: Configuring BUSCO with local environment 2022-08-17 15:04:50 INFO: Mode is genome 2022-08-17 15:04:50 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 15:05:03 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_odoriferum_S6-2.fna 2022-08-17 15:05:03 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 15:05:03 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 15:05:03 2022-08-17 15:05:04 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 15:05:04 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 15:05:04 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 15:05:04 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 15:05:04 2022-08-17 15:05:12 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 15:05:12 INFO: Genetic code 11 selected as optimal 2022-08-17 15:05:12 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 15:05:12 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 15:05:12 2022-08-17 15:05:17 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 15:05:22 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 15:05:25 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 15:05:28 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 15:05:31 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 15:05:34 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 15:05:37 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 15:05:39 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 15:05:41 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 15:05:42 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 15:05:43 INFO: Results: C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 2022-08-17 15:05:43 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 | |438 Complete BUSCOs (C) | |436 Complete and single-copy BUSCOs (S) | |2 Complete and duplicated BUSCOs (D) | |1 Fragmented BUSCOs (F) | |1 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 15:05:43 INFO: BUSCO analysis done. Total running time: 40 seconds 2022-08-17 15:05:43 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_odoriferum_S6-2 2022-08-17 15:05:43 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 15:05:43 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 15:05:43 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 15:05:43 ***** 2022-08-17 15:05:43 INFO: Configuring BUSCO with local environment 2022-08-17 15:05:43 INFO: Mode is genome 2022-08-17 15:05:43 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 15:05:56 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_odoriferum_S6.fna 2022-08-17 15:05:56 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 15:05:56 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 15:05:56 2022-08-17 15:05:57 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 15:05:57 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 15:05:57 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 15:05:57 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 15:05:57 2022-08-17 15:06:05 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 15:06:05 INFO: Genetic code 11 selected as optimal 2022-08-17 15:06:05 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 15:06:05 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 15:06:05 2022-08-17 15:06:10 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 15:06:15 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 15:06:18 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 15:06:22 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 15:06:25 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 15:06:27 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 15:06:30 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 15:06:32 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 15:06:34 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 15:06:36 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 15:06:36 INFO: Results: C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 2022-08-17 15:06:36 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 | |438 Complete BUSCOs (C) | |436 Complete and single-copy BUSCOs (S) | |2 Complete and duplicated BUSCOs (D) | |1 Fragmented BUSCOs (F) | |1 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 15:06:36 INFO: BUSCO analysis done. Total running time: 40 seconds 2022-08-17 15:06:36 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_odoriferum_S6 2022-08-17 15:06:36 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 15:06:36 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 15:06:37 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 15:06:37 ***** 2022-08-17 15:06:37 INFO: Configuring BUSCO with local environment 2022-08-17 15:06:37 INFO: Mode is genome 2022-08-17 15:06:37 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 15:06:49 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_odoriferum_T4.fna 2022-08-17 15:06:49 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 15:06:49 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 15:06:49 2022-08-17 15:06:50 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 15:06:50 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 15:06:50 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 15:06:50 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 15:06:50 2022-08-17 15:06:58 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 15:06:58 INFO: Genetic code 11 selected as optimal 2022-08-17 15:06:58 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 15:06:58 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 15:06:58 2022-08-17 15:07:03 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 15:07:08 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 15:07:11 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 15:07:15 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 15:07:18 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 15:07:21 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 15:07:24 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 15:07:26 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 15:07:28 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 15:07:30 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 15:07:30 INFO: Results: C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 2022-08-17 15:07:30 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 | |438 Complete BUSCOs (C) | |436 Complete and single-copy BUSCOs (S) | |2 Complete and duplicated BUSCOs (D) | |1 Fragmented BUSCOs (F) | |1 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 15:07:30 INFO: BUSCO analysis done. Total running time: 41 seconds 2022-08-17 15:07:30 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_odoriferum_T4 2022-08-17 15:07:30 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 15:07:30 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 15:07:30 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 15:07:30 ***** 2022-08-17 15:07:30 INFO: Configuring BUSCO with local environment 2022-08-17 15:07:30 INFO: Mode is genome 2022-08-17 15:07:30 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 15:07:43 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_odoriferum_T5.fna 2022-08-17 15:07:43 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 15:07:43 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 15:07:43 2022-08-17 15:07:44 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 15:07:44 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 15:07:44 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 15:07:44 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 15:07:44 2022-08-17 15:07:52 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 15:07:52 INFO: Genetic code 11 selected as optimal 2022-08-17 15:07:52 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 15:07:52 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 15:07:52 2022-08-17 15:07:57 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 15:08:01 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 15:08:05 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 15:08:09 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 15:08:12 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 15:08:15 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 15:08:17 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 15:08:19 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 15:08:22 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 15:08:23 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 15:08:23 INFO: Results: C:99.4%[S:98.9%,D:0.5%],F:0.2%,M:0.4%,n:440 2022-08-17 15:08:24 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.4%[S:98.9%,D:0.5%],F:0.2%,M:0.4%,n:440 | |437 Complete BUSCOs (C) | |435 Complete and single-copy BUSCOs (S) | |2 Complete and duplicated BUSCOs (D) | |1 Fragmented BUSCOs (F) | |2 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 15:08:24 INFO: BUSCO analysis done. Total running time: 41 seconds 2022-08-17 15:08:24 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_odoriferum_T5 2022-08-17 15:08:24 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 15:08:24 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 15:08:24 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 15:08:24 ***** 2022-08-17 15:08:24 INFO: Configuring BUSCO with local environment 2022-08-17 15:08:24 INFO: Mode is genome 2022-08-17 15:08:24 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 15:08:37 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_parmentieri_CFIA1002_CFIA1002.fna 2022-08-17 15:08:37 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 15:08:37 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 15:08:37 2022-08-17 15:08:38 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 15:08:38 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 15:08:38 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 15:08:38 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 15:08:38 2022-08-17 15:08:47 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 15:08:47 INFO: Genetic code 11 selected as optimal 2022-08-17 15:08:47 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 15:08:47 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 15:08:47 2022-08-17 15:08:52 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 15:08:56 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 15:08:59 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 15:09:03 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 15:09:06 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 15:09:09 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 15:09:11 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 15:09:13 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 15:09:15 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 15:09:17 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 15:09:17 INFO: Results: C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 2022-08-17 15:09:17 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 | |438 Complete BUSCOs (C) | |436 Complete and single-copy BUSCOs (S) | |2 Complete and duplicated BUSCOs (D) | |1 Fragmented BUSCOs (F) | |1 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 15:09:17 INFO: BUSCO analysis done. Total running time: 40 seconds 2022-08-17 15:09:17 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_parmentieri_CFIA1002_CFIA1002 2022-08-17 15:09:17 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 15:09:17 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 15:09:18 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 15:09:18 ***** 2022-08-17 15:09:18 INFO: Configuring BUSCO with local environment 2022-08-17 15:09:18 INFO: Mode is genome 2022-08-17 15:09:18 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 15:09:30 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_parmentieri_HC.fna 2022-08-17 15:09:30 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 15:09:30 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 15:09:30 2022-08-17 15:09:31 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 15:09:31 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 15:09:31 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 15:09:31 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 15:09:31 2022-08-17 15:09:39 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 15:09:40 INFO: Genetic code 11 selected as optimal 2022-08-17 15:09:40 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 15:09:40 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 15:09:40 2022-08-17 15:09:44 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 15:09:49 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 15:09:52 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 15:09:56 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 15:09:59 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 15:10:02 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 15:10:05 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 15:10:07 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 15:10:09 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 15:10:10 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 15:10:10 INFO: Results: C:99.1%[S:98.6%,D:0.5%],F:0.5%,M:0.4%,n:440 2022-08-17 15:10:11 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.1%[S:98.6%,D:0.5%],F:0.5%,M:0.4%,n:440 | |436 Complete BUSCOs (C) | |434 Complete and single-copy BUSCOs (S) | |2 Complete and duplicated BUSCOs (D) | |2 Fragmented BUSCOs (F) | |2 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 15:10:11 INFO: BUSCO analysis done. Total running time: 40 seconds 2022-08-17 15:10:11 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_parmentieri_HC 2022-08-17 15:10:11 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 15:10:11 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 15:10:11 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 15:10:11 ***** 2022-08-17 15:10:11 INFO: Configuring BUSCO with local environment 2022-08-17 15:10:11 INFO: Mode is genome 2022-08-17 15:10:11 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 15:10:24 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_parmentieri_IFB5408.fna 2022-08-17 15:10:24 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 15:10:24 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 15:10:24 2022-08-17 15:10:25 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 15:10:25 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 15:10:25 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 15:10:25 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 15:10:25 2022-08-17 15:10:33 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 15:10:33 INFO: Genetic code 11 selected as optimal 2022-08-17 15:10:33 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 15:10:33 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 15:10:33 2022-08-17 15:10:38 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 15:10:42 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 15:10:46 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 15:10:49 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 15:10:53 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 15:10:55 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 15:10:58 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 15:11:00 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 15:11:02 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 15:11:04 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 15:11:04 INFO: Results: C:99.5%[S:98.6%,D:0.9%],F:0.2%,M:0.3%,n:440 2022-08-17 15:11:04 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.5%[S:98.6%,D:0.9%],F:0.2%,M:0.3%,n:440 | |438 Complete BUSCOs (C) | |434 Complete and single-copy BUSCOs (S) | |4 Complete and duplicated BUSCOs (D) | |1 Fragmented BUSCOs (F) | |1 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 15:11:04 INFO: BUSCO analysis done. Total running time: 41 seconds 2022-08-17 15:11:04 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_parmentieri_IFB5408 2022-08-17 15:11:04 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 15:11:04 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 15:11:05 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 15:11:05 ***** 2022-08-17 15:11:05 INFO: Configuring BUSCO with local environment 2022-08-17 15:11:05 INFO: Mode is genome 2022-08-17 15:11:05 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 15:11:17 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_parmentieri_IFB5427.fna 2022-08-17 15:11:18 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 15:11:18 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 15:11:18 2022-08-17 15:11:18 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 15:11:18 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 15:11:18 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 15:11:18 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 15:11:18 2022-08-17 15:11:27 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 15:11:27 INFO: Genetic code 11 selected as optimal 2022-08-17 15:11:27 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 15:11:27 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 15:11:27 2022-08-17 15:11:33 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 15:11:37 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 15:11:41 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 15:11:45 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 15:11:48 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 15:11:51 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 15:11:54 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 15:11:56 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 15:11:58 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 15:11:59 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 15:11:59 INFO: Results: C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 2022-08-17 15:12:00 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 | |438 Complete BUSCOs (C) | |436 Complete and single-copy BUSCOs (S) | |2 Complete and duplicated BUSCOs (D) | |1 Fragmented BUSCOs (F) | |1 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 15:12:00 INFO: BUSCO analysis done. Total running time: 42 seconds 2022-08-17 15:12:00 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_parmentieri_IFB5427 2022-08-17 15:12:00 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 15:12:00 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 15:12:00 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 15:12:00 ***** 2022-08-17 15:12:00 INFO: Configuring BUSCO with local environment 2022-08-17 15:12:00 INFO: Mode is genome 2022-08-17 15:12:00 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 15:12:13 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_parmentieri_IFB5432.fna 2022-08-17 15:12:13 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 15:12:13 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 15:12:13 2022-08-17 15:12:14 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 15:12:14 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 15:12:14 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 15:12:14 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 15:12:14 2022-08-17 15:12:22 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 15:12:22 INFO: Genetic code 11 selected as optimal 2022-08-17 15:12:22 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 15:12:22 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 15:12:22 2022-08-17 15:12:28 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 15:12:32 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 15:12:35 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 15:12:39 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 15:12:42 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 15:12:45 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 15:12:48 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 15:12:50 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 15:12:52 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 15:12:54 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 15:12:54 INFO: Results: C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 2022-08-17 15:12:54 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 | |438 Complete BUSCOs (C) | |436 Complete and single-copy BUSCOs (S) | |2 Complete and duplicated BUSCOs (D) | |1 Fragmented BUSCOs (F) | |1 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 15:12:54 INFO: BUSCO analysis done. Total running time: 41 seconds 2022-08-17 15:12:54 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_parmentieri_IFB5432 2022-08-17 15:12:54 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 15:12:54 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 15:12:54 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 15:12:54 ***** 2022-08-17 15:12:54 INFO: Configuring BUSCO with local environment 2022-08-17 15:12:54 INFO: Mode is genome 2022-08-17 15:12:54 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 15:13:07 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_parmentieri_IFB5441.fna 2022-08-17 15:13:07 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 15:13:07 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 15:13:07 2022-08-17 15:13:08 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 15:13:08 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 15:13:08 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 15:13:08 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 15:13:08 2022-08-17 15:13:16 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 15:13:16 INFO: Genetic code 11 selected as optimal 2022-08-17 15:13:16 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 15:13:16 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 15:13:16 2022-08-17 15:13:22 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 15:13:26 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 15:13:29 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 15:13:33 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 15:13:36 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 15:13:39 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 15:13:41 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 15:13:43 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 15:13:46 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 15:13:47 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 15:13:47 INFO: Results: C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 2022-08-17 15:13:48 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 | |438 Complete BUSCOs (C) | |436 Complete and single-copy BUSCOs (S) | |2 Complete and duplicated BUSCOs (D) | |1 Fragmented BUSCOs (F) | |1 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 15:13:48 INFO: BUSCO analysis done. Total running time: 41 seconds 2022-08-17 15:13:48 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_parmentieri_IFB5441 2022-08-17 15:13:48 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 15:13:48 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 15:13:48 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 15:13:48 ***** 2022-08-17 15:13:48 INFO: Configuring BUSCO with local environment 2022-08-17 15:13:48 INFO: Mode is genome 2022-08-17 15:13:48 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 15:14:01 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_parmentieri_IFB5485.fna 2022-08-17 15:14:01 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 15:14:01 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 15:14:01 2022-08-17 15:14:02 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 15:14:02 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 15:14:02 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 15:14:02 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 15:14:02 2022-08-17 15:14:09 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 15:14:10 INFO: Genetic code 11 selected as optimal 2022-08-17 15:14:10 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 15:14:10 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 15:14:10 2022-08-17 15:14:15 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 15:14:19 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 15:14:23 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 15:14:26 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 15:14:29 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 15:14:32 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 15:14:35 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 15:14:37 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 15:14:39 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 15:14:41 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 15:14:41 INFO: Results: C:99.6%[S:98.9%,D:0.7%],F:0.2%,M:0.2%,n:440 2022-08-17 15:14:41 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.6%[S:98.9%,D:0.7%],F:0.2%,M:0.2%,n:440 | |438 Complete BUSCOs (C) | |435 Complete and single-copy BUSCOs (S) | |3 Complete and duplicated BUSCOs (D) | |1 Fragmented BUSCOs (F) | |1 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 15:14:41 INFO: BUSCO analysis done. Total running time: 40 seconds 2022-08-17 15:14:41 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_parmentieri_IFB5485 2022-08-17 15:14:41 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 15:14:41 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 15:14:42 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 15:14:42 ***** 2022-08-17 15:14:42 INFO: Configuring BUSCO with local environment 2022-08-17 15:14:42 INFO: Mode is genome 2022-08-17 15:14:42 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 15:14:54 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_parmentieri_IFB5486.fna 2022-08-17 15:14:54 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 15:14:54 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 15:14:54 2022-08-17 15:14:55 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 15:14:55 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 15:14:55 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 15:14:55 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 15:14:55 2022-08-17 15:15:03 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 15:15:04 INFO: Genetic code 11 selected as optimal 2022-08-17 15:15:04 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 15:15:04 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 15:15:04 2022-08-17 15:15:09 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 15:15:13 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 15:15:17 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 15:15:20 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 15:15:23 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 15:15:26 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 15:15:29 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 15:15:31 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 15:15:33 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 15:15:35 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 15:15:35 INFO: Results: C:99.5%[S:98.6%,D:0.9%],F:0.2%,M:0.3%,n:440 2022-08-17 15:15:35 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.5%[S:98.6%,D:0.9%],F:0.2%,M:0.3%,n:440 | |438 Complete BUSCOs (C) | |434 Complete and single-copy BUSCOs (S) | |4 Complete and duplicated BUSCOs (D) | |1 Fragmented BUSCOs (F) | |1 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 15:15:35 INFO: BUSCO analysis done. Total running time: 41 seconds 2022-08-17 15:15:35 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_parmentieri_IFB5486 2022-08-17 15:15:35 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 15:15:35 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 15:15:35 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 15:15:35 ***** 2022-08-17 15:15:35 INFO: Configuring BUSCO with local environment 2022-08-17 15:15:35 INFO: Mode is genome 2022-08-17 15:15:35 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 15:15:48 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_parmentieri_IFB5597.fna 2022-08-17 15:15:48 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 15:15:48 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 15:15:48 2022-08-17 15:15:49 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 15:15:49 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 15:15:49 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 15:15:49 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 15:15:49 2022-08-17 15:15:57 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 15:15:57 INFO: Genetic code 11 selected as optimal 2022-08-17 15:15:57 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 15:15:57 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 15:15:57 2022-08-17 15:16:02 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 15:16:07 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 15:16:10 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 15:16:13 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 15:16:16 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 15:16:19 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 15:16:22 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 15:16:24 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 15:16:26 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 15:16:28 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 15:16:28 INFO: Results: C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 2022-08-17 15:16:28 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 | |438 Complete BUSCOs (C) | |436 Complete and single-copy BUSCOs (S) | |2 Complete and duplicated BUSCOs (D) | |1 Fragmented BUSCOs (F) | |1 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 15:16:28 INFO: BUSCO analysis done. Total running time: 40 seconds 2022-08-17 15:16:28 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_parmentieri_IFB5597 2022-08-17 15:16:28 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 15:16:28 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 15:16:28 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 15:16:28 ***** 2022-08-17 15:16:28 INFO: Configuring BUSCO with local environment 2022-08-17 15:16:28 INFO: Mode is genome 2022-08-17 15:16:28 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 15:16:41 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_parmentieri_IFB5604.fna 2022-08-17 15:16:41 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 15:16:41 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 15:16:41 2022-08-17 15:16:42 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 15:16:42 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 15:16:42 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 15:16:42 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 15:16:42 2022-08-17 15:16:50 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 15:16:50 INFO: Genetic code 11 selected as optimal 2022-08-17 15:16:50 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 15:16:50 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 15:16:50 2022-08-17 15:16:55 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 15:16:59 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 15:17:03 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 15:17:06 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 15:17:09 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 15:17:12 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 15:17:15 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 15:17:17 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 15:17:19 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 15:17:21 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 15:17:21 INFO: Results: C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 2022-08-17 15:17:21 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 | |438 Complete BUSCOs (C) | |436 Complete and single-copy BUSCOs (S) | |2 Complete and duplicated BUSCOs (D) | |1 Fragmented BUSCOs (F) | |1 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 15:17:21 INFO: BUSCO analysis done. Total running time: 40 seconds 2022-08-17 15:17:21 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_parmentieri_IFB5604 2022-08-17 15:17:21 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 15:17:21 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 15:17:22 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 15:17:21 ***** 2022-08-17 15:17:22 INFO: Configuring BUSCO with local environment 2022-08-17 15:17:22 INFO: Mode is genome 2022-08-17 15:17:22 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 15:17:34 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_parmentieri_IFB5605.fna 2022-08-17 15:17:34 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 15:17:34 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 15:17:34 2022-08-17 15:17:35 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 15:17:35 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 15:17:35 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 15:17:35 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 15:17:35 2022-08-17 15:17:43 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 15:17:43 INFO: Genetic code 11 selected as optimal 2022-08-17 15:17:43 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 15:17:43 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 15:17:43 2022-08-17 15:17:49 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 15:17:53 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 15:17:57 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 15:18:00 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 15:18:03 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 15:18:06 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 15:18:09 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 15:18:11 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 15:18:13 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 15:18:15 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 15:18:15 INFO: Results: C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 2022-08-17 15:18:15 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 | |438 Complete BUSCOs (C) | |436 Complete and single-copy BUSCOs (S) | |2 Complete and duplicated BUSCOs (D) | |1 Fragmented BUSCOs (F) | |1 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 15:18:15 INFO: BUSCO analysis done. Total running time: 41 seconds 2022-08-17 15:18:15 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_parmentieri_IFB5605 2022-08-17 15:18:15 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 15:18:15 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 15:18:15 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 15:18:15 ***** 2022-08-17 15:18:15 INFO: Configuring BUSCO with local environment 2022-08-17 15:18:15 INFO: Mode is genome 2022-08-17 15:18:15 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 15:18:28 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_parmentieri_IFB5619.fna 2022-08-17 15:18:28 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 15:18:28 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 15:18:28 2022-08-17 15:18:29 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 15:18:29 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 15:18:29 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 15:18:29 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 15:18:29 2022-08-17 15:18:37 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 15:18:37 INFO: Genetic code 11 selected as optimal 2022-08-17 15:18:37 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 15:18:37 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 15:18:37 2022-08-17 15:18:43 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 15:18:47 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 15:18:51 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 15:18:54 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 15:18:57 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 15:19:00 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 15:19:03 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 15:19:05 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 15:19:07 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 15:19:09 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 15:19:09 INFO: Results: C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 2022-08-17 15:19:09 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 | |438 Complete BUSCOs (C) | |436 Complete and single-copy BUSCOs (S) | |2 Complete and duplicated BUSCOs (D) | |1 Fragmented BUSCOs (F) | |1 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 15:19:09 INFO: BUSCO analysis done. Total running time: 41 seconds 2022-08-17 15:19:09 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_parmentieri_IFB5619 2022-08-17 15:19:09 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 15:19:09 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 15:19:09 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 15:19:09 ***** 2022-08-17 15:19:09 INFO: Configuring BUSCO with local environment 2022-08-17 15:19:09 INFO: Mode is genome 2022-08-17 15:19:09 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 15:19:22 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_parmentieri_IFB5623.fna 2022-08-17 15:19:22 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 15:19:22 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 15:19:22 2022-08-17 15:19:23 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 15:19:23 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 15:19:23 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 15:19:23 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 15:19:23 2022-08-17 15:19:31 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 15:19:31 INFO: Genetic code 11 selected as optimal 2022-08-17 15:19:31 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 15:19:31 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 15:19:31 2022-08-17 15:19:36 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 15:19:40 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 15:19:44 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 15:19:47 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 15:19:51 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 15:19:53 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 15:19:56 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 15:19:58 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 15:20:00 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 15:20:02 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 15:20:02 INFO: Results: C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 2022-08-17 15:20:02 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 | |438 Complete BUSCOs (C) | |436 Complete and single-copy BUSCOs (S) | |2 Complete and duplicated BUSCOs (D) | |1 Fragmented BUSCOs (F) | |1 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 15:20:02 INFO: BUSCO analysis done. Total running time: 40 seconds 2022-08-17 15:20:02 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_parmentieri_IFB5623 2022-08-17 15:20:02 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 15:20:02 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 15:20:03 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 15:20:03 ***** 2022-08-17 15:20:03 INFO: Configuring BUSCO with local environment 2022-08-17 15:20:03 INFO: Mode is genome 2022-08-17 15:20:03 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 15:20:15 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_parmentieri_IFB5626.fna 2022-08-17 15:20:15 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 15:20:15 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 15:20:15 2022-08-17 15:20:16 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 15:20:16 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 15:20:16 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 15:20:16 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 15:20:16 2022-08-17 15:20:24 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 15:20:25 INFO: Genetic code 11 selected as optimal 2022-08-17 15:20:25 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 15:20:25 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 15:20:25 2022-08-17 15:20:30 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 15:20:34 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 15:20:38 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 15:20:42 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 15:20:45 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 15:20:48 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 15:20:50 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 15:20:52 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 15:20:54 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 15:20:56 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 15:20:56 INFO: Results: C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 2022-08-17 15:20:56 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 | |438 Complete BUSCOs (C) | |436 Complete and single-copy BUSCOs (S) | |2 Complete and duplicated BUSCOs (D) | |1 Fragmented BUSCOs (F) | |1 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 15:20:56 INFO: BUSCO analysis done. Total running time: 41 seconds 2022-08-17 15:20:56 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_parmentieri_IFB5626 2022-08-17 15:20:56 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 15:20:56 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 15:20:57 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 15:20:57 ***** 2022-08-17 15:20:57 INFO: Configuring BUSCO with local environment 2022-08-17 15:20:57 INFO: Mode is genome 2022-08-17 15:20:57 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 15:21:09 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_parmentieri_IPO_1955.fna 2022-08-17 15:21:10 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 15:21:10 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 15:21:10 2022-08-17 15:21:11 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 15:21:11 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 15:21:11 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 15:21:11 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 15:21:11 2022-08-17 15:21:18 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 15:21:18 INFO: Genetic code 11 selected as optimal 2022-08-17 15:21:18 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 15:21:18 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 15:21:18 2022-08-17 15:21:23 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 15:21:28 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 15:21:31 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 15:21:35 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 15:21:38 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 15:21:41 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 15:21:43 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 15:21:45 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 15:21:47 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 15:21:49 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 15:21:49 INFO: Results: C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 2022-08-17 15:21:49 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 | |438 Complete BUSCOs (C) | |436 Complete and single-copy BUSCOs (S) | |2 Complete and duplicated BUSCOs (D) | |1 Fragmented BUSCOs (F) | |1 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 15:21:49 INFO: BUSCO analysis done. Total running time: 40 seconds 2022-08-17 15:21:49 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_parmentieri_IPO_1955 2022-08-17 15:21:49 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 15:21:49 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 15:21:50 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 15:21:50 ***** 2022-08-17 15:21:50 INFO: Configuring BUSCO with local environment 2022-08-17 15:21:50 INFO: Mode is genome 2022-08-17 15:21:50 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 15:22:02 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_parmentieri_NY1532B.fna 2022-08-17 15:22:03 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 15:22:03 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 15:22:03 2022-08-17 15:22:03 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 15:22:03 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 15:22:03 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 15:22:03 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 15:22:03 2022-08-17 15:22:11 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 15:22:11 INFO: Genetic code 11 selected as optimal 2022-08-17 15:22:11 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 15:22:11 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 15:22:11 2022-08-17 15:22:16 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 15:22:20 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 15:22:24 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 15:22:27 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 15:22:30 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 15:22:33 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 15:22:35 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 15:22:37 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 15:22:39 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 15:22:41 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 15:22:41 INFO: Results: C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 2022-08-17 15:22:41 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 | |438 Complete BUSCOs (C) | |436 Complete and single-copy BUSCOs (S) | |2 Complete and duplicated BUSCOs (D) | |1 Fragmented BUSCOs (F) | |1 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 15:22:41 INFO: BUSCO analysis done. Total running time: 39 seconds 2022-08-17 15:22:41 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_parmentieri_NY1532B 2022-08-17 15:22:41 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 15:22:41 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 15:22:42 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 15:22:42 ***** 2022-08-17 15:22:42 INFO: Configuring BUSCO with local environment 2022-08-17 15:22:42 INFO: Mode is genome 2022-08-17 15:22:42 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 15:22:55 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_parmentieri_NY1533B.fna 2022-08-17 15:22:55 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 15:22:55 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 15:22:55 2022-08-17 15:22:56 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 15:22:56 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 15:22:56 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 15:22:56 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 15:22:56 2022-08-17 15:23:03 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 15:23:03 INFO: Genetic code 11 selected as optimal 2022-08-17 15:23:03 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 15:23:03 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 15:23:03 2022-08-17 15:23:09 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 15:23:13 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 15:23:16 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 15:23:20 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 15:23:23 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 15:23:26 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 15:23:29 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 15:23:31 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 15:23:33 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 15:23:35 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 15:23:35 INFO: Results: C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 2022-08-17 15:23:35 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 | |438 Complete BUSCOs (C) | |436 Complete and single-copy BUSCOs (S) | |2 Complete and duplicated BUSCOs (D) | |1 Fragmented BUSCOs (F) | |1 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 15:23:35 INFO: BUSCO analysis done. Total running time: 40 seconds 2022-08-17 15:23:35 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_parmentieri_NY1533B 2022-08-17 15:23:35 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 15:23:35 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 15:23:35 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 15:23:35 ***** 2022-08-17 15:23:35 INFO: Configuring BUSCO with local environment 2022-08-17 15:23:35 INFO: Mode is genome 2022-08-17 15:23:35 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 15:23:48 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_parmentieri_NY1540A.fna 2022-08-17 15:23:48 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 15:23:48 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 15:23:48 2022-08-17 15:23:49 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 15:23:49 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 15:23:49 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 15:23:49 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 15:23:49 2022-08-17 15:23:57 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 15:23:57 INFO: Genetic code 11 selected as optimal 2022-08-17 15:23:57 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 15:23:57 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 15:23:57 2022-08-17 15:24:02 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 15:24:06 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 15:24:10 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 15:24:14 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 15:24:17 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 15:24:20 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 15:24:22 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 15:24:24 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 15:24:26 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 15:24:28 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 15:24:28 INFO: Results: C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 2022-08-17 15:24:28 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 | |438 Complete BUSCOs (C) | |436 Complete and single-copy BUSCOs (S) | |2 Complete and duplicated BUSCOs (D) | |1 Fragmented BUSCOs (F) | |1 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 15:24:28 INFO: BUSCO analysis done. Total running time: 40 seconds 2022-08-17 15:24:28 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_parmentieri_NY1540A 2022-08-17 15:24:28 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 15:24:28 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 15:24:29 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 15:24:29 ***** 2022-08-17 15:24:29 INFO: Configuring BUSCO with local environment 2022-08-17 15:24:29 INFO: Mode is genome 2022-08-17 15:24:29 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 15:24:42 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_parmentieri_NY1548A.fna 2022-08-17 15:24:42 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 15:24:42 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 15:24:42 2022-08-17 15:24:43 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 15:24:43 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 15:24:43 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 15:24:43 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 15:24:43 2022-08-17 15:24:51 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 15:24:51 INFO: Genetic code 11 selected as optimal 2022-08-17 15:24:51 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 15:24:51 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 15:24:51 2022-08-17 15:24:56 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 15:25:01 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 15:25:04 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 15:25:07 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 15:25:11 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 15:25:14 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 15:25:16 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 15:25:18 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 15:25:20 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 15:25:22 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 15:25:22 INFO: Results: C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 2022-08-17 15:25:22 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 | |438 Complete BUSCOs (C) | |436 Complete and single-copy BUSCOs (S) | |2 Complete and duplicated BUSCOs (D) | |1 Fragmented BUSCOs (F) | |1 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 15:25:22 INFO: BUSCO analysis done. Total running time: 41 seconds 2022-08-17 15:25:22 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_parmentieri_NY1548A 2022-08-17 15:25:22 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 15:25:22 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 15:25:23 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 15:25:23 ***** 2022-08-17 15:25:23 INFO: Configuring BUSCO with local environment 2022-08-17 15:25:23 INFO: Mode is genome 2022-08-17 15:25:23 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 15:25:35 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_parmentieri_NY1584A.fna 2022-08-17 15:25:36 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 15:25:36 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 15:25:36 2022-08-17 15:25:36 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 15:25:36 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 15:25:36 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 15:25:36 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 15:25:36 2022-08-17 15:25:44 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 15:25:44 INFO: Genetic code 11 selected as optimal 2022-08-17 15:25:44 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 15:25:44 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 15:25:44 2022-08-17 15:25:49 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 15:25:53 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 15:25:57 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 15:26:00 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 15:26:03 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 15:26:06 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 15:26:09 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 15:26:11 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 15:26:13 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 15:26:15 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 15:26:15 INFO: Results: C:99.4%[S:98.9%,D:0.5%],F:0.5%,M:0.1%,n:440 2022-08-17 15:26:15 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.4%[S:98.9%,D:0.5%],F:0.5%,M:0.1%,n:440 | |437 Complete BUSCOs (C) | |435 Complete and single-copy BUSCOs (S) | |2 Complete and duplicated BUSCOs (D) | |2 Fragmented BUSCOs (F) | |1 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 15:26:15 INFO: BUSCO analysis done. Total running time: 40 seconds 2022-08-17 15:26:15 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_parmentieri_NY1584A 2022-08-17 15:26:15 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 15:26:15 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 15:26:16 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 15:26:16 ***** 2022-08-17 15:26:16 INFO: Configuring BUSCO with local environment 2022-08-17 15:26:16 INFO: Mode is genome 2022-08-17 15:26:16 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 15:26:28 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_parmentieri_NY1585A.fna 2022-08-17 15:26:28 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 15:26:28 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 15:26:28 2022-08-17 15:26:29 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 15:26:29 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 15:26:29 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 15:26:29 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 15:26:29 2022-08-17 15:26:37 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 15:26:37 INFO: Genetic code 11 selected as optimal 2022-08-17 15:26:37 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 15:26:37 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 15:26:37 2022-08-17 15:26:43 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 15:26:47 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 15:26:51 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 15:26:54 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 15:26:57 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 15:27:00 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 15:27:03 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 15:27:05 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 15:27:07 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 15:27:09 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 15:27:09 INFO: Results: C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 2022-08-17 15:27:09 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 | |438 Complete BUSCOs (C) | |436 Complete and single-copy BUSCOs (S) | |2 Complete and duplicated BUSCOs (D) | |1 Fragmented BUSCOs (F) | |1 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 15:27:09 INFO: BUSCO analysis done. Total running time: 41 seconds 2022-08-17 15:27:09 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_parmentieri_NY1585A 2022-08-17 15:27:09 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 15:27:09 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 15:27:10 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 15:27:10 ***** 2022-08-17 15:27:10 INFO: Configuring BUSCO with local environment 2022-08-17 15:27:10 INFO: Mode is genome 2022-08-17 15:27:10 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 15:27:22 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_parmentieri_NY1587A.fna 2022-08-17 15:27:22 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 15:27:22 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 15:27:22 2022-08-17 15:27:23 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 15:27:23 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 15:27:23 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 15:27:23 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 15:27:23 2022-08-17 15:27:31 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 15:27:31 INFO: Genetic code 11 selected as optimal 2022-08-17 15:27:31 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 15:27:31 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 15:27:31 2022-08-17 15:27:36 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 15:27:40 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 15:27:44 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 15:27:47 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 15:27:50 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 15:27:53 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 15:27:55 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 15:27:57 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 15:27:59 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 15:28:01 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 15:28:01 INFO: Results: C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 2022-08-17 15:28:01 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 | |438 Complete BUSCOs (C) | |436 Complete and single-copy BUSCOs (S) | |2 Complete and duplicated BUSCOs (D) | |1 Fragmented BUSCOs (F) | |1 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 15:28:01 INFO: BUSCO analysis done. Total running time: 39 seconds 2022-08-17 15:28:01 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_parmentieri_NY1587A 2022-08-17 15:28:01 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 15:28:01 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 15:28:02 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 15:28:02 ***** 2022-08-17 15:28:02 INFO: Configuring BUSCO with local environment 2022-08-17 15:28:02 INFO: Mode is genome 2022-08-17 15:28:02 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 15:28:15 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_parmentieri_NY1588A.fna 2022-08-17 15:28:15 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 15:28:15 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 15:28:15 2022-08-17 15:28:16 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 15:28:16 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 15:28:16 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 15:28:16 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 15:28:16 2022-08-17 15:28:24 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 15:28:24 INFO: Genetic code 11 selected as optimal 2022-08-17 15:28:24 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 15:28:24 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 15:28:24 2022-08-17 15:28:29 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 15:28:33 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 15:28:37 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 15:28:41 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 15:28:44 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 15:28:47 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 15:28:49 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 15:28:51 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 15:28:54 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 15:28:55 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 15:28:55 INFO: Results: C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 2022-08-17 15:28:55 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 | |438 Complete BUSCOs (C) | |436 Complete and single-copy BUSCOs (S) | |2 Complete and duplicated BUSCOs (D) | |1 Fragmented BUSCOs (F) | |1 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 15:28:55 INFO: BUSCO analysis done. Total running time: 41 seconds 2022-08-17 15:28:55 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_parmentieri_NY1588A 2022-08-17 15:28:55 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 15:28:55 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 15:28:56 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 15:28:56 ***** 2022-08-17 15:28:56 INFO: Configuring BUSCO with local environment 2022-08-17 15:28:56 INFO: Mode is genome 2022-08-17 15:28:56 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 15:29:09 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_parmentieri_NY1712A.fna 2022-08-17 15:29:09 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 15:29:09 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 15:29:09 2022-08-17 15:29:10 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 15:29:10 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 15:29:10 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 15:29:10 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 15:29:10 2022-08-17 15:29:17 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 15:29:17 INFO: Genetic code 11 selected as optimal 2022-08-17 15:29:17 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 15:29:17 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 15:29:17 2022-08-17 15:29:23 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 15:29:27 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 15:29:31 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 15:29:34 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 15:29:37 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 15:29:40 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 15:29:43 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 15:29:45 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 15:29:47 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 15:29:49 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 15:29:49 INFO: Results: C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 2022-08-17 15:29:49 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 | |438 Complete BUSCOs (C) | |436 Complete and single-copy BUSCOs (S) | |2 Complete and duplicated BUSCOs (D) | |1 Fragmented BUSCOs (F) | |1 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 15:29:49 INFO: BUSCO analysis done. Total running time: 40 seconds 2022-08-17 15:29:49 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_parmentieri_NY1712A 2022-08-17 15:29:49 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 15:29:49 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 15:29:49 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 15:29:49 ***** 2022-08-17 15:29:49 INFO: Configuring BUSCO with local environment 2022-08-17 15:29:49 INFO: Mode is genome 2022-08-17 15:29:50 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 15:30:02 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_parmentieri_NY1722A.fna 2022-08-17 15:30:02 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 15:30:02 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 15:30:02 2022-08-17 15:30:03 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 15:30:03 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 15:30:03 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 15:30:03 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 15:30:03 2022-08-17 15:30:11 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 15:30:11 INFO: Genetic code 11 selected as optimal 2022-08-17 15:30:11 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 15:30:11 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 15:30:11 2022-08-17 15:30:17 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 15:30:21 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 15:30:25 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 15:30:28 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 15:30:32 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 15:30:34 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 15:30:37 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 15:30:39 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 15:30:41 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 15:30:43 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 15:30:43 INFO: Results: C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 2022-08-17 15:30:43 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 | |438 Complete BUSCOs (C) | |436 Complete and single-copy BUSCOs (S) | |2 Complete and duplicated BUSCOs (D) | |1 Fragmented BUSCOs (F) | |1 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 15:30:43 INFO: BUSCO analysis done. Total running time: 41 seconds 2022-08-17 15:30:43 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_parmentieri_NY1722A 2022-08-17 15:30:43 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 15:30:43 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 15:30:44 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 15:30:44 ***** 2022-08-17 15:30:44 INFO: Configuring BUSCO with local environment 2022-08-17 15:30:44 INFO: Mode is genome 2022-08-17 15:30:44 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 15:30:56 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_parmentieri_PB20.fna 2022-08-17 15:30:56 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 15:30:56 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 15:30:56 2022-08-17 15:30:57 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 15:30:57 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 15:30:57 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 15:30:57 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 15:30:57 2022-08-17 15:31:05 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 15:31:05 INFO: Genetic code 11 selected as optimal 2022-08-17 15:31:05 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 15:31:05 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 15:31:05 2022-08-17 15:31:10 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 15:31:14 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 15:31:18 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 15:31:21 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 15:31:24 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 15:31:27 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 15:31:30 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 15:31:32 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 15:31:34 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 15:31:36 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 15:31:36 INFO: Results: C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 2022-08-17 15:31:36 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 | |438 Complete BUSCOs (C) | |436 Complete and single-copy BUSCOs (S) | |2 Complete and duplicated BUSCOs (D) | |1 Fragmented BUSCOs (F) | |1 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 15:31:36 INFO: BUSCO analysis done. Total running time: 40 seconds 2022-08-17 15:31:36 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_parmentieri_PB20 2022-08-17 15:31:36 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 15:31:36 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 15:31:37 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 15:31:36 ***** 2022-08-17 15:31:37 INFO: Configuring BUSCO with local environment 2022-08-17 15:31:37 INFO: Mode is genome 2022-08-17 15:31:37 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 15:31:49 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_parmentieri_QK-5.fna 2022-08-17 15:31:49 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 15:31:49 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 15:31:49 2022-08-17 15:31:50 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 15:31:50 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 15:31:50 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 15:31:50 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 15:31:50 2022-08-17 15:31:58 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 15:31:58 INFO: Genetic code 11 selected as optimal 2022-08-17 15:31:58 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 15:31:58 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 15:31:58 2022-08-17 15:32:04 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 15:32:08 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 15:32:12 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 15:32:15 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 15:32:19 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 15:32:21 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 15:32:24 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 15:32:26 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 15:32:28 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 15:32:30 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 15:32:30 INFO: Results: C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 2022-08-17 15:32:30 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 | |438 Complete BUSCOs (C) | |436 Complete and single-copy BUSCOs (S) | |2 Complete and duplicated BUSCOs (D) | |1 Fragmented BUSCOs (F) | |1 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 15:32:30 INFO: BUSCO analysis done. Total running time: 41 seconds 2022-08-17 15:32:30 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_parmentieri_QK-5 2022-08-17 15:32:30 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 15:32:30 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 15:32:31 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 15:32:31 ***** 2022-08-17 15:32:31 INFO: Configuring BUSCO with local environment 2022-08-17 15:32:31 INFO: Mode is genome 2022-08-17 15:32:31 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 15:32:43 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_parmentieri_RNS08-42-1A.fna 2022-08-17 15:32:43 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 15:32:43 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 15:32:43 2022-08-17 15:32:44 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 15:32:44 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 15:32:44 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 15:32:44 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 15:32:44 2022-08-17 15:32:52 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 15:32:53 INFO: Genetic code 11 selected as optimal 2022-08-17 15:32:53 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 15:32:53 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 15:32:53 2022-08-17 15:32:57 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 15:33:02 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 15:33:05 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 15:33:09 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 15:33:12 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 15:33:15 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 15:33:17 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 15:33:19 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 15:33:21 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 15:33:23 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 15:33:23 INFO: Results: C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 2022-08-17 15:33:23 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 | |438 Complete BUSCOs (C) | |436 Complete and single-copy BUSCOs (S) | |2 Complete and duplicated BUSCOs (D) | |1 Fragmented BUSCOs (F) | |1 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 15:33:23 INFO: BUSCO analysis done. Total running time: 40 seconds 2022-08-17 15:33:23 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_parmentieri_RNS08-42-1A 2022-08-17 15:33:23 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 15:33:23 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 15:33:24 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 15:33:24 ***** 2022-08-17 15:33:24 INFO: Configuring BUSCO with local environment 2022-08-17 15:33:24 INFO: Mode is genome 2022-08-17 15:33:24 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 15:33:36 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_parmentieri_SCC3193.fna 2022-08-17 15:33:37 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 15:33:37 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 15:33:37 2022-08-17 15:33:37 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 15:33:37 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 15:33:37 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 15:33:37 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 15:33:37 2022-08-17 15:33:46 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 15:33:46 INFO: Genetic code 11 selected as optimal 2022-08-17 15:33:46 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 15:33:46 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 15:33:46 2022-08-17 15:33:51 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 15:33:56 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 15:33:59 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 15:34:03 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 15:34:06 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 15:34:08 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 15:34:11 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 15:34:13 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 15:34:15 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 15:34:17 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 15:34:17 INFO: Results: C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 2022-08-17 15:34:17 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 | |438 Complete BUSCOs (C) | |436 Complete and single-copy BUSCOs (S) | |2 Complete and duplicated BUSCOs (D) | |1 Fragmented BUSCOs (F) | |1 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 15:34:17 INFO: BUSCO analysis done. Total running time: 41 seconds 2022-08-17 15:34:17 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_parmentieri_SCC3193 2022-08-17 15:34:17 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 15:34:17 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 15:34:18 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 15:34:18 ***** 2022-08-17 15:34:18 INFO: Configuring BUSCO with local environment 2022-08-17 15:34:18 INFO: Mode is genome 2022-08-17 15:34:18 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 15:34:30 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_parmentieri_SS90.fna 2022-08-17 15:34:31 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 15:34:31 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 15:34:31 2022-08-17 15:34:31 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 15:34:32 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 15:34:32 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 15:34:32 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 15:34:32 2022-08-17 15:34:39 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 15:34:39 INFO: Genetic code 11 selected as optimal 2022-08-17 15:34:39 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 15:34:39 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 15:34:39 2022-08-17 15:34:45 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 15:34:49 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 15:34:53 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 15:34:56 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 15:34:59 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 15:35:02 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 15:35:05 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 15:35:07 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 15:35:09 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 15:35:10 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 15:35:11 INFO: Results: C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 2022-08-17 15:35:11 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 | |438 Complete BUSCOs (C) | |436 Complete and single-copy BUSCOs (S) | |2 Complete and duplicated BUSCOs (D) | |1 Fragmented BUSCOs (F) | |1 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 15:35:11 INFO: BUSCO analysis done. Total running time: 40 seconds 2022-08-17 15:35:11 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_parmentieri_SS90 2022-08-17 15:35:11 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 15:35:11 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 15:35:11 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 15:35:11 ***** 2022-08-17 15:35:11 INFO: Configuring BUSCO with local environment 2022-08-17 15:35:11 INFO: Mode is genome 2022-08-17 15:35:11 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 15:35:24 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_parmentieri_WC19161.fna 2022-08-17 15:35:24 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 15:35:24 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 15:35:24 2022-08-17 15:35:25 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 15:35:25 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 15:35:25 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 15:35:25 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 15:35:25 2022-08-17 15:35:33 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 15:35:33 INFO: Genetic code 11 selected as optimal 2022-08-17 15:35:33 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 15:35:33 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 15:35:33 2022-08-17 15:35:38 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 15:35:43 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 15:35:46 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 15:35:50 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 15:35:53 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 15:35:56 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 15:35:58 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 15:36:00 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 15:36:02 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 15:36:04 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 15:36:04 INFO: Results: C:99.4%[S:98.9%,D:0.5%],F:0.5%,M:0.1%,n:440 2022-08-17 15:36:04 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.4%[S:98.9%,D:0.5%],F:0.5%,M:0.1%,n:440 | |437 Complete BUSCOs (C) | |435 Complete and single-copy BUSCOs (S) | |2 Complete and duplicated BUSCOs (D) | |2 Fragmented BUSCOs (F) | |1 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 15:36:04 INFO: BUSCO analysis done. Total running time: 40 seconds 2022-08-17 15:36:04 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_parmentieri_WC19161 2022-08-17 15:36:04 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 15:36:04 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 15:36:05 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 15:36:05 ***** 2022-08-17 15:36:05 INFO: Configuring BUSCO with local environment 2022-08-17 15:36:05 INFO: Mode is genome 2022-08-17 15:36:05 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 15:36:17 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_parmentieri_WPP163_WPP163.fna 2022-08-17 15:36:18 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 15:36:18 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 15:36:18 2022-08-17 15:36:18 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 15:36:18 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 15:36:18 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 15:36:18 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 15:36:18 2022-08-17 15:36:27 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 15:36:27 INFO: Genetic code 11 selected as optimal 2022-08-17 15:36:27 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 15:36:27 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 15:36:27 2022-08-17 15:36:32 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 15:36:37 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 15:36:41 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 15:36:44 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 15:36:47 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 15:36:50 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 15:36:53 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 15:36:55 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 15:36:57 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 15:36:59 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 15:36:59 INFO: Results: C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 2022-08-17 15:36:59 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 | |438 Complete BUSCOs (C) | |436 Complete and single-copy BUSCOs (S) | |2 Complete and duplicated BUSCOs (D) | |1 Fragmented BUSCOs (F) | |1 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 15:36:59 INFO: BUSCO analysis done. Total running time: 42 seconds 2022-08-17 15:36:59 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_parmentieri_WPP163_WPP163 2022-08-17 15:36:59 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 15:36:59 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 15:37:00 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 15:37:00 ***** 2022-08-17 15:37:00 INFO: Configuring BUSCO with local environment 2022-08-17 15:37:00 INFO: Mode is genome 2022-08-17 15:37:00 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 15:37:12 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_parvum_NCPPB3395.fna 2022-08-17 15:37:12 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 15:37:12 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 15:37:12 2022-08-17 15:37:13 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 15:37:13 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 15:37:13 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 15:37:13 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 15:37:13 2022-08-17 15:37:20 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 15:37:21 INFO: Genetic code 11 selected as optimal 2022-08-17 15:37:21 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 15:37:21 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 15:37:21 2022-08-17 15:37:26 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 15:37:30 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 15:37:33 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 15:37:36 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 15:37:39 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 15:37:42 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 15:37:45 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 15:37:47 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 15:37:49 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 15:37:50 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 15:37:51 INFO: Results: C:99.5%[S:99.3%,D:0.2%],F:0.2%,M:0.3%,n:440 2022-08-17 15:37:51 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.5%[S:99.3%,D:0.2%],F:0.2%,M:0.3%,n:440 | |438 Complete BUSCOs (C) | |437 Complete and single-copy BUSCOs (S) | |1 Complete and duplicated BUSCOs (D) | |1 Fragmented BUSCOs (F) | |1 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 15:37:51 INFO: BUSCO analysis done. Total running time: 39 seconds 2022-08-17 15:37:51 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_parvum_NCPPB3395 2022-08-17 15:37:51 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 15:37:51 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 15:37:51 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 15:37:51 ***** 2022-08-17 15:37:51 INFO: Configuring BUSCO with local environment 2022-08-17 15:37:51 INFO: Mode is genome 2022-08-17 15:37:51 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 15:38:04 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_parvum_s0416.fna 2022-08-17 15:38:04 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 15:38:04 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 15:38:04 2022-08-17 15:38:05 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 15:38:05 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 15:38:05 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 15:38:05 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 15:38:05 2022-08-17 15:38:12 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 15:38:12 INFO: Genetic code 11 selected as optimal 2022-08-17 15:38:12 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 15:38:12 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 15:38:12 2022-08-17 15:38:17 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 15:38:21 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 15:38:24 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 15:38:27 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 15:38:30 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 15:38:33 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 15:38:36 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 15:38:38 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 15:38:40 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 15:38:41 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 15:38:41 INFO: Results: C:99.5%[S:99.3%,D:0.2%],F:0.2%,M:0.3%,n:440 2022-08-17 15:38:41 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.5%[S:99.3%,D:0.2%],F:0.2%,M:0.3%,n:440 | |438 Complete BUSCOs (C) | |437 Complete and single-copy BUSCOs (S) | |1 Complete and duplicated BUSCOs (D) | |1 Fragmented BUSCOs (F) | |1 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 15:38:41 INFO: BUSCO analysis done. Total running time: 38 seconds 2022-08-17 15:38:41 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_parvum_s0416 2022-08-17 15:38:41 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 15:38:41 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 15:38:42 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 15:38:42 ***** 2022-08-17 15:38:42 INFO: Configuring BUSCO with local environment 2022-08-17 15:38:42 INFO: Mode is genome 2022-08-17 15:38:42 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 15:38:55 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_parvum_s0421.fna 2022-08-17 15:38:55 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 15:38:55 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 15:38:55 2022-08-17 15:38:56 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 15:38:56 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 15:38:56 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 15:38:56 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 15:38:56 2022-08-17 15:39:03 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 15:39:03 INFO: Genetic code 11 selected as optimal 2022-08-17 15:39:03 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 15:39:03 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 15:39:03 2022-08-17 15:39:08 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 15:39:13 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 15:39:16 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 15:39:19 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 15:39:23 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 15:39:25 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 15:39:28 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 15:39:30 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 15:39:32 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 15:39:33 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 15:39:34 INFO: Results: C:99.5%[S:99.3%,D:0.2%],F:0.2%,M:0.3%,n:440 2022-08-17 15:39:34 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.5%[S:99.3%,D:0.2%],F:0.2%,M:0.3%,n:440 | |438 Complete BUSCOs (C) | |437 Complete and single-copy BUSCOs (S) | |1 Complete and duplicated BUSCOs (D) | |1 Fragmented BUSCOs (F) | |1 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 15:39:34 INFO: BUSCO analysis done. Total running time: 39 seconds 2022-08-17 15:39:34 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_parvum_s0421 2022-08-17 15:39:34 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 15:39:34 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 15:39:34 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 15:39:34 ***** 2022-08-17 15:39:34 INFO: Configuring BUSCO with local environment 2022-08-17 15:39:34 INFO: Mode is genome 2022-08-17 15:39:34 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 15:39:47 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_parvum_Y1.fna 2022-08-17 15:39:47 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 15:39:47 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 15:39:47 2022-08-17 15:39:48 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 15:39:48 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 15:39:48 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 15:39:48 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 15:39:48 2022-08-17 15:39:54 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 15:39:54 INFO: Genetic code 11 selected as optimal 2022-08-17 15:39:54 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 15:39:54 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 15:39:54 2022-08-17 15:39:59 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 15:40:03 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 15:40:06 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 15:40:09 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 15:40:12 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 15:40:14 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 15:40:17 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 15:40:19 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 15:40:21 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 15:40:22 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 15:40:22 INFO: Results: C:92.5%[S:92.3%,D:0.2%],F:0.5%,M:7.0%,n:440 2022-08-17 15:40:22 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:92.5%[S:92.3%,D:0.2%],F:0.5%,M:7.0%,n:440 | |407 Complete BUSCOs (C) | |406 Complete and single-copy BUSCOs (S) | |1 Complete and duplicated BUSCOs (D) | |2 Fragmented BUSCOs (F) | |31 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 15:40:22 INFO: BUSCO analysis done. Total running time: 36 seconds 2022-08-17 15:40:22 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_parvum_Y1 2022-08-17 15:40:22 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 15:40:22 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 15:40:23 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 15:40:23 ***** 2022-08-17 15:40:23 INFO: Configuring BUSCO with local environment 2022-08-17 15:40:23 INFO: Mode is genome 2022-08-17 15:40:23 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 15:40:36 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_peruviense_A350-S18-N16.fna 2022-08-17 15:40:36 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 15:40:36 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 15:40:36 2022-08-17 15:40:37 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 15:40:37 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 15:40:37 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 15:40:37 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 15:40:37 2022-08-17 15:40:44 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 15:40:44 INFO: Genetic code 11 selected as optimal 2022-08-17 15:40:44 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 15:40:44 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 15:40:44 2022-08-17 15:40:50 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 15:40:55 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 15:40:58 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 15:41:01 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 15:41:05 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 15:41:07 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 15:41:10 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 15:41:12 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 15:41:14 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 15:41:16 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 15:41:16 INFO: Results: C:99.5%[S:99.3%,D:0.2%],F:0.2%,M:0.3%,n:440 2022-08-17 15:41:16 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.5%[S:99.3%,D:0.2%],F:0.2%,M:0.3%,n:440 | |438 Complete BUSCOs (C) | |437 Complete and single-copy BUSCOs (S) | |1 Complete and duplicated BUSCOs (D) | |1 Fragmented BUSCOs (F) | |1 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 15:41:16 INFO: BUSCO analysis done. Total running time: 40 seconds 2022-08-17 15:41:16 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_peruviense_A350-S18-N16 2022-08-17 15:41:16 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 15:41:16 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 15:41:17 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 15:41:17 ***** 2022-08-17 15:41:17 INFO: Configuring BUSCO with local environment 2022-08-17 15:41:17 INFO: Mode is genome 2022-08-17 15:41:17 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 15:41:29 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_peruviense_A97-S13-F16.fna 2022-08-17 15:41:29 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 15:41:29 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 15:41:29 2022-08-17 15:41:30 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 15:41:30 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 15:41:30 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 15:41:30 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 15:41:30 2022-08-17 15:41:38 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 15:41:38 INFO: Genetic code 11 selected as optimal 2022-08-17 15:41:38 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 15:41:38 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 15:41:38 2022-08-17 15:41:43 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 15:41:48 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 15:41:51 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 15:41:54 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 15:41:57 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 15:42:00 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 15:42:03 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 15:42:05 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 15:42:07 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 15:42:09 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 15:42:09 INFO: Results: C:99.5%[S:99.3%,D:0.2%],F:0.2%,M:0.3%,n:440 2022-08-17 15:42:09 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.5%[S:99.3%,D:0.2%],F:0.2%,M:0.3%,n:440 | |438 Complete BUSCOs (C) | |437 Complete and single-copy BUSCOs (S) | |1 Complete and duplicated BUSCOs (D) | |1 Fragmented BUSCOs (F) | |1 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 15:42:09 INFO: BUSCO analysis done. Total running time: 40 seconds 2022-08-17 15:42:09 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_peruviense_A97-S13-F16 2022-08-17 15:42:09 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 15:42:09 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 15:42:10 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 15:42:10 ***** 2022-08-17 15:42:10 INFO: Configuring BUSCO with local environment 2022-08-17 15:42:10 INFO: Mode is genome 2022-08-17 15:42:10 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 15:42:22 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_peruviense_IFB5229.fna 2022-08-17 15:42:22 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 15:42:22 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 15:42:22 2022-08-17 15:42:23 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 15:42:23 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 15:42:23 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 15:42:23 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 15:42:23 2022-08-17 15:42:30 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 15:42:30 INFO: Genetic code 11 selected as optimal 2022-08-17 15:42:30 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 15:42:30 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 15:42:30 2022-08-17 15:42:34 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 15:42:38 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 15:42:41 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 15:42:44 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 15:42:47 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 15:42:49 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 15:42:51 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 15:42:53 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 15:42:55 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 15:42:57 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 15:42:57 INFO: Results: C:74.5%[S:72.5%,D:2.0%],F:0.7%,M:24.8%,n:440 2022-08-17 15:42:57 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:74.5%[S:72.5%,D:2.0%],F:0.7%,M:24.8%,n:440 | |328 Complete BUSCOs (C) | |319 Complete and single-copy BUSCOs (S) | |9 Complete and duplicated BUSCOs (D) | |3 Fragmented BUSCOs (F) | |109 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 15:42:57 INFO: BUSCO analysis done. Total running time: 35 seconds 2022-08-17 15:42:57 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_peruviense_IFB5229 2022-08-17 15:42:57 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 15:42:57 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 15:42:58 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 15:42:58 ***** 2022-08-17 15:42:58 INFO: Configuring BUSCO with local environment 2022-08-17 15:42:58 INFO: Mode is genome 2022-08-17 15:42:58 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 15:43:10 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_peruviense_IFB5232.fna 2022-08-17 15:43:10 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 15:43:10 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 15:43:10 2022-08-17 15:43:11 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 15:43:11 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 15:43:11 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 15:43:11 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 15:43:11 2022-08-17 15:43:19 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 15:43:19 INFO: Genetic code 11 selected as optimal 2022-08-17 15:43:19 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 15:43:19 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 15:43:19 2022-08-17 15:43:25 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 15:43:29 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 15:43:32 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 15:43:36 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 15:43:39 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 15:43:42 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 15:43:44 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 15:43:46 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 15:43:48 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 15:43:50 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 15:43:50 INFO: Results: C:99.5%[S:99.3%,D:0.2%],F:0.2%,M:0.3%,n:440 2022-08-17 15:43:50 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.5%[S:99.3%,D:0.2%],F:0.2%,M:0.3%,n:440 | |438 Complete BUSCOs (C) | |437 Complete and single-copy BUSCOs (S) | |1 Complete and duplicated BUSCOs (D) | |1 Fragmented BUSCOs (F) | |1 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 15:43:50 INFO: BUSCO analysis done. Total running time: 40 seconds 2022-08-17 15:43:50 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_peruviense_IFB5232 2022-08-17 15:43:50 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 15:43:50 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 15:43:51 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 15:43:51 ***** 2022-08-17 15:43:51 INFO: Configuring BUSCO with local environment 2022-08-17 15:43:51 INFO: Mode is genome 2022-08-17 15:43:51 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 15:44:03 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_peruviense_UGC32.fna 2022-08-17 15:44:04 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 15:44:04 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 15:44:04 2022-08-17 15:44:04 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 15:44:04 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 15:44:04 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 15:44:04 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 15:44:04 2022-08-17 15:44:12 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 15:44:12 INFO: Genetic code 11 selected as optimal 2022-08-17 15:44:12 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 15:44:12 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 15:44:12 2022-08-17 15:44:18 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 15:44:22 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 15:44:25 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 15:44:29 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 15:44:32 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 15:44:34 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 15:44:37 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 15:44:39 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 15:44:41 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 15:44:43 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 15:44:43 INFO: Results: C:99.5%[S:99.3%,D:0.2%],F:0.2%,M:0.3%,n:440 2022-08-17 15:44:43 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.5%[S:99.3%,D:0.2%],F:0.2%,M:0.3%,n:440 | |438 Complete BUSCOs (C) | |437 Complete and single-copy BUSCOs (S) | |1 Complete and duplicated BUSCOs (D) | |1 Fragmented BUSCOs (F) | |1 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 15:44:43 INFO: BUSCO analysis done. Total running time: 40 seconds 2022-08-17 15:44:43 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_peruviense_UGC32 2022-08-17 15:44:43 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 15:44:43 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 15:44:44 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 15:44:44 ***** 2022-08-17 15:44:44 INFO: Configuring BUSCO with local environment 2022-08-17 15:44:44 INFO: Mode is genome 2022-08-17 15:44:44 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 15:44:56 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_polaris_A3.fna 2022-08-17 15:44:56 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 15:44:56 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 15:44:56 2022-08-17 15:44:57 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 15:44:57 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 15:44:57 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 15:44:57 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 15:44:57 2022-08-17 15:45:05 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 15:45:05 INFO: Genetic code 11 selected as optimal 2022-08-17 15:45:05 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 15:45:05 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 15:45:05 2022-08-17 15:45:10 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 15:45:15 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 15:45:18 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 15:45:21 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 15:45:25 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 15:45:27 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 15:45:30 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 15:45:32 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 15:45:34 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 15:45:36 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 15:45:36 INFO: Results: C:99.1%[S:98.9%,D:0.2%],F:0.2%,M:0.7%,n:440 2022-08-17 15:45:36 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.1%[S:98.9%,D:0.2%],F:0.2%,M:0.7%,n:440 | |436 Complete BUSCOs (C) | |435 Complete and single-copy BUSCOs (S) | |1 Complete and duplicated BUSCOs (D) | |1 Fragmented BUSCOs (F) | |3 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 15:45:36 INFO: BUSCO analysis done. Total running time: 40 seconds 2022-08-17 15:45:36 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_polaris_A3 2022-08-17 15:45:36 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 15:45:36 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 15:45:37 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 15:45:37 ***** 2022-08-17 15:45:37 INFO: Configuring BUSCO with local environment 2022-08-17 15:45:37 INFO: Mode is genome 2022-08-17 15:45:37 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 15:45:49 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_polaris_A447-S21-J17.fna 2022-08-17 15:45:49 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 15:45:49 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 15:45:49 2022-08-17 15:45:50 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 15:45:50 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 15:45:50 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 15:45:50 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 15:45:50 2022-08-17 15:45:57 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 15:45:58 INFO: Genetic code 11 selected as optimal 2022-08-17 15:45:58 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 15:45:58 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 15:45:58 2022-08-17 15:46:03 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 15:46:07 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 15:46:11 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 15:46:14 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 15:46:17 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 15:46:20 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 15:46:23 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 15:46:25 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 15:46:27 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 15:46:29 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 15:46:29 INFO: Results: C:98.8%[S:98.6%,D:0.2%],F:0.2%,M:1.0%,n:440 2022-08-17 15:46:29 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:98.8%[S:98.6%,D:0.2%],F:0.2%,M:1.0%,n:440 | |435 Complete BUSCOs (C) | |434 Complete and single-copy BUSCOs (S) | |1 Complete and duplicated BUSCOs (D) | |1 Fragmented BUSCOs (F) | |4 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 15:46:29 INFO: BUSCO analysis done. Total running time: 40 seconds 2022-08-17 15:46:29 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_polaris_A447-S21-J17 2022-08-17 15:46:29 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 15:46:29 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 15:46:29 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 15:46:29 ***** 2022-08-17 15:46:29 INFO: Configuring BUSCO with local environment 2022-08-17 15:46:29 INFO: Mode is genome 2022-08-17 15:46:29 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 15:46:42 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_polaris_A641-S6-A17.fna 2022-08-17 15:46:42 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 15:46:42 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 15:46:42 2022-08-17 15:46:43 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 15:46:43 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 15:46:43 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 15:46:43 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 15:46:43 2022-08-17 15:46:51 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 15:46:51 INFO: Genetic code 11 selected as optimal 2022-08-17 15:46:51 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 15:46:51 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 15:46:51 2022-08-17 15:46:56 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 15:47:01 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 15:47:04 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 15:47:08 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 15:47:11 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 15:47:14 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 15:47:17 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 15:47:19 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 15:47:21 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 15:47:23 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 15:47:23 INFO: Results: C:99.5%[S:99.3%,D:0.2%],F:0.2%,M:0.3%,n:440 2022-08-17 15:47:23 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.5%[S:99.3%,D:0.2%],F:0.2%,M:0.3%,n:440 | |438 Complete BUSCOs (C) | |437 Complete and single-copy BUSCOs (S) | |1 Complete and duplicated BUSCOs (D) | |1 Fragmented BUSCOs (F) | |1 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 15:47:23 INFO: BUSCO analysis done. Total running time: 41 seconds 2022-08-17 15:47:23 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_polaris_A641-S6-A17 2022-08-17 15:47:23 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 15:47:23 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 15:47:24 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 15:47:24 ***** 2022-08-17 15:47:24 INFO: Configuring BUSCO with local environment 2022-08-17 15:47:24 INFO: Mode is genome 2022-08-17 15:47:24 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 15:47:36 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_polaris_A668-S6-A17.fna 2022-08-17 15:47:37 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 15:47:37 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 15:47:37 2022-08-17 15:47:37 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 15:47:38 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 15:47:38 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 15:47:38 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 15:47:38 2022-08-17 15:47:45 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 15:47:45 INFO: Genetic code 11 selected as optimal 2022-08-17 15:47:45 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 15:47:45 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 15:47:45 2022-08-17 15:47:51 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 15:47:56 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 15:47:59 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 15:48:03 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 15:48:06 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 15:48:09 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 15:48:11 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 15:48:13 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 15:48:15 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 15:48:17 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 15:48:17 INFO: Results: C:99.5%[S:99.3%,D:0.2%],F:0.2%,M:0.3%,n:440 2022-08-17 15:48:17 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.5%[S:99.3%,D:0.2%],F:0.2%,M:0.3%,n:440 | |438 Complete BUSCOs (C) | |437 Complete and single-copy BUSCOs (S) | |1 Complete and duplicated BUSCOs (D) | |1 Fragmented BUSCOs (F) | |1 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 15:48:17 INFO: BUSCO analysis done. Total running time: 41 seconds 2022-08-17 15:48:17 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_polaris_A668-S6-A17 2022-08-17 15:48:17 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 15:48:17 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 15:48:18 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 15:48:18 ***** 2022-08-17 15:48:18 INFO: Configuring BUSCO with local environment 2022-08-17 15:48:18 INFO: Mode is genome 2022-08-17 15:48:18 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 15:48:31 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_polaris_F109.fna 2022-08-17 15:48:31 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 15:48:31 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 15:48:31 2022-08-17 15:48:32 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 15:48:32 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 15:48:32 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 15:48:32 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 15:48:32 2022-08-17 15:48:39 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 15:48:40 INFO: Genetic code 11 selected as optimal 2022-08-17 15:48:40 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 15:48:40 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 15:48:40 2022-08-17 15:48:45 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 15:48:49 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 15:48:52 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 15:48:56 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 15:48:59 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 15:49:02 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 15:49:05 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 15:49:06 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 15:49:09 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 15:49:10 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 15:49:10 INFO: Results: C:99.5%[S:99.3%,D:0.2%],F:0.2%,M:0.3%,n:440 2022-08-17 15:49:11 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.5%[S:99.3%,D:0.2%],F:0.2%,M:0.3%,n:440 | |438 Complete BUSCOs (C) | |437 Complete and single-copy BUSCOs (S) | |1 Complete and duplicated BUSCOs (D) | |1 Fragmented BUSCOs (F) | |1 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 15:49:11 INFO: BUSCO analysis done. Total running time: 40 seconds 2022-08-17 15:49:11 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_polaris_F109 2022-08-17 15:49:11 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 15:49:11 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 15:49:11 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 15:49:11 ***** 2022-08-17 15:49:11 INFO: Configuring BUSCO with local environment 2022-08-17 15:49:11 INFO: Mode is genome 2022-08-17 15:49:11 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 15:49:24 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_polaris_.fna 2022-08-17 15:49:24 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 15:49:24 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 15:49:24 2022-08-17 15:49:25 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 15:49:25 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 15:49:25 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 15:49:25 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 15:49:25 2022-08-17 15:49:33 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 15:49:33 INFO: Genetic code 11 selected as optimal 2022-08-17 15:49:33 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 15:49:33 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 15:49:33 2022-08-17 15:49:38 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 15:49:43 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 15:49:47 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 15:49:50 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 15:49:54 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 15:49:56 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 15:49:59 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 15:50:01 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 15:50:03 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 15:50:05 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 15:50:05 INFO: Results: C:99.5%[S:99.3%,D:0.2%],F:0.2%,M:0.3%,n:440 2022-08-17 15:50:05 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.5%[S:99.3%,D:0.2%],F:0.2%,M:0.3%,n:440 | |438 Complete BUSCOs (C) | |437 Complete and single-copy BUSCOs (S) | |1 Complete and duplicated BUSCOs (D) | |1 Fragmented BUSCOs (F) | |1 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 15:50:05 INFO: BUSCO analysis done. Total running time: 42 seconds 2022-08-17 15:50:05 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_polaris_ 2022-08-17 15:50:05 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 15:50:05 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 15:50:06 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 15:50:06 ***** 2022-08-17 15:50:06 INFO: Configuring BUSCO with local environment 2022-08-17 15:50:06 INFO: Mode is genome 2022-08-17 15:50:06 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 15:50:19 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_polaris_IPO_4059NAK_253.fna 2022-08-17 15:50:19 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 15:50:19 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 15:50:19 2022-08-17 15:50:20 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 15:50:20 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 15:50:20 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 15:50:20 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 15:50:20 2022-08-17 15:50:28 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 15:50:28 INFO: Genetic code 11 selected as optimal 2022-08-17 15:50:28 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 15:50:28 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 15:50:28 2022-08-17 15:50:33 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 15:50:38 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 15:50:41 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 15:50:44 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 15:50:48 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 15:50:51 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 15:50:53 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 15:50:55 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 15:50:57 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 15:50:59 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 15:50:59 INFO: Results: C:99.5%[S:99.3%,D:0.2%],F:0.2%,M:0.3%,n:440 2022-08-17 15:50:59 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.5%[S:99.3%,D:0.2%],F:0.2%,M:0.3%,n:440 | |438 Complete BUSCOs (C) | |437 Complete and single-copy BUSCOs (S) | |1 Complete and duplicated BUSCOs (D) | |1 Fragmented BUSCOs (F) | |1 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 15:50:59 INFO: BUSCO analysis done. Total running time: 41 seconds 2022-08-17 15:50:59 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_polaris_IPO_4059NAK_253 2022-08-17 15:50:59 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 15:50:59 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 15:51:00 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 15:51:00 ***** 2022-08-17 15:51:00 INFO: Configuring BUSCO with local environment 2022-08-17 15:51:00 INFO: Mode is genome 2022-08-17 15:51:00 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 15:51:13 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_polaris_NAK_226.fna 2022-08-17 15:51:13 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 15:51:13 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 15:51:13 2022-08-17 15:51:14 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 15:51:14 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 15:51:14 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 15:51:14 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 15:51:14 2022-08-17 15:51:21 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 15:51:22 INFO: Genetic code 11 selected as optimal 2022-08-17 15:51:22 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 15:51:22 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 15:51:22 2022-08-17 15:51:27 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 15:51:31 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 15:51:35 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 15:51:38 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 15:51:41 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 15:51:44 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 15:51:47 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 15:51:49 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 15:51:51 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 15:51:53 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 15:51:53 INFO: Results: C:99.5%[S:99.3%,D:0.2%],F:0.2%,M:0.3%,n:440 2022-08-17 15:51:53 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.5%[S:99.3%,D:0.2%],F:0.2%,M:0.3%,n:440 | |438 Complete BUSCOs (C) | |437 Complete and single-copy BUSCOs (S) | |1 Complete and duplicated BUSCOs (D) | |1 Fragmented BUSCOs (F) | |1 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 15:51:53 INFO: BUSCO analysis done. Total running time: 40 seconds 2022-08-17 15:51:53 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_polaris_NAK_226 2022-08-17 15:51:53 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 15:51:53 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 15:51:54 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 15:51:54 ***** 2022-08-17 15:51:54 INFO: Configuring BUSCO with local environment 2022-08-17 15:51:54 INFO: Mode is genome 2022-08-17 15:51:54 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 15:52:06 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_polaris_NIBIO1006.fna 2022-08-17 15:52:06 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 15:52:06 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 15:52:06 2022-08-17 15:52:07 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 15:52:07 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 15:52:07 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 15:52:07 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 15:52:07 2022-08-17 15:52:15 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 15:52:16 INFO: Genetic code 11 selected as optimal 2022-08-17 15:52:16 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 15:52:16 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 15:52:16 2022-08-17 15:52:21 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 15:52:25 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 15:52:29 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 15:52:32 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 15:52:35 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 15:52:38 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 15:52:41 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 15:52:43 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 15:52:45 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 15:52:47 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 15:52:47 INFO: Results: C:99.5%[S:99.3%,D:0.2%],F:0.2%,M:0.3%,n:440 2022-08-17 15:52:47 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.5%[S:99.3%,D:0.2%],F:0.2%,M:0.3%,n:440 | |438 Complete BUSCOs (C) | |437 Complete and single-copy BUSCOs (S) | |1 Complete and duplicated BUSCOs (D) | |1 Fragmented BUSCOs (F) | |1 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 15:52:47 INFO: BUSCO analysis done. Total running time: 41 seconds 2022-08-17 15:52:47 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_polaris_NIBIO1006 2022-08-17 15:52:47 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 15:52:47 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 15:52:47 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 15:52:47 ***** 2022-08-17 15:52:47 INFO: Configuring BUSCO with local environment 2022-08-17 15:52:47 INFO: Mode is genome 2022-08-17 15:52:47 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 15:53:00 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_polaris_NIBIO1392.fna 2022-08-17 15:53:00 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 15:53:00 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 15:53:00 2022-08-17 15:53:01 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 15:53:01 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 15:53:01 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 15:53:01 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 15:53:01 2022-08-17 15:53:09 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 15:53:10 INFO: Genetic code 11 selected as optimal 2022-08-17 15:53:10 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 15:53:10 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 15:53:10 2022-08-17 15:53:15 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 15:53:19 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 15:53:23 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 15:53:26 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 15:53:29 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 15:53:32 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 15:53:34 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 15:53:36 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 15:53:39 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 15:53:40 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 15:53:40 INFO: Results: C:99.5%[S:99.3%,D:0.2%],F:0.2%,M:0.3%,n:440 2022-08-17 15:53:40 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.5%[S:99.3%,D:0.2%],F:0.2%,M:0.3%,n:440 | |438 Complete BUSCOs (C) | |437 Complete and single-copy BUSCOs (S) | |1 Complete and duplicated BUSCOs (D) | |1 Fragmented BUSCOs (F) | |1 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 15:53:40 INFO: BUSCO analysis done. Total running time: 41 seconds 2022-08-17 15:53:40 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_polaris_NIBIO1392 2022-08-17 15:53:40 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 15:53:40 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 15:53:41 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 15:53:41 ***** 2022-08-17 15:53:41 INFO: Configuring BUSCO with local environment 2022-08-17 15:53:41 INFO: Mode is genome 2022-08-17 15:53:41 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 15:53:54 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_polaris_PZ1.fna 2022-08-17 15:53:54 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 15:53:54 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 15:53:54 2022-08-17 15:53:55 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 15:53:55 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 15:53:55 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 15:53:55 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 15:53:55 2022-08-17 15:54:03 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 15:54:03 INFO: Genetic code 11 selected as optimal 2022-08-17 15:54:03 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 15:54:03 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 15:54:03 2022-08-17 15:54:07 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 15:54:12 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 15:54:15 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 15:54:19 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 15:54:22 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 15:54:24 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 15:54:27 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 15:54:29 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 15:54:31 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 15:54:33 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 15:54:33 INFO: Results: C:96.1%[S:95.9%,D:0.2%],F:2.7%,M:1.2%,n:440 2022-08-17 15:54:33 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:96.1%[S:95.9%,D:0.2%],F:2.7%,M:1.2%,n:440 | |423 Complete BUSCOs (C) | |422 Complete and single-copy BUSCOs (S) | |1 Complete and duplicated BUSCOs (D) | |12 Fragmented BUSCOs (F) | |5 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 15:54:33 INFO: BUSCO analysis done. Total running time: 39 seconds 2022-08-17 15:54:33 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_polaris_PZ1 2022-08-17 15:54:33 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 15:54:33 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 15:54:34 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 15:54:34 ***** 2022-08-17 15:54:34 INFO: Configuring BUSCO with local environment 2022-08-17 15:54:34 INFO: Mode is genome 2022-08-17 15:54:34 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 15:54:46 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_polaris_QK413-1.fna 2022-08-17 15:54:46 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 15:54:46 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 15:54:46 2022-08-17 15:54:47 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 15:54:47 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 15:54:47 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 15:54:47 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 15:54:47 2022-08-17 15:54:55 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 15:54:55 INFO: Genetic code 11 selected as optimal 2022-08-17 15:54:55 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 15:54:55 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 15:54:55 2022-08-17 15:55:00 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 15:55:05 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 15:55:09 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 15:55:12 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 15:55:16 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 15:55:18 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 15:55:21 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 15:55:23 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 15:55:25 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 15:55:27 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 15:55:27 INFO: Results: C:99.5%[S:99.3%,D:0.2%],F:0.2%,M:0.3%,n:440 2022-08-17 15:55:27 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.5%[S:99.3%,D:0.2%],F:0.2%,M:0.3%,n:440 | |438 Complete BUSCOs (C) | |437 Complete and single-copy BUSCOs (S) | |1 Complete and duplicated BUSCOs (D) | |1 Fragmented BUSCOs (F) | |1 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 15:55:27 INFO: BUSCO analysis done. Total running time: 41 seconds 2022-08-17 15:55:27 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_polaris_QK413-1 2022-08-17 15:55:27 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 15:55:27 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 15:55:28 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 15:55:28 ***** 2022-08-17 15:55:28 INFO: Configuring BUSCO with local environment 2022-08-17 15:55:28 INFO: Mode is genome 2022-08-17 15:55:28 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 15:55:40 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_polaris_S4.16.03.2B.fna 2022-08-17 15:55:41 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 15:55:41 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 15:55:41 2022-08-17 15:55:41 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 15:55:41 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 15:55:41 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 15:55:41 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 15:55:41 2022-08-17 15:55:49 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 15:55:49 INFO: Genetic code 11 selected as optimal 2022-08-17 15:55:49 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 15:55:49 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 15:55:49 2022-08-17 15:55:55 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 15:55:59 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 15:56:02 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 15:56:05 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 15:56:09 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 15:56:12 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 15:56:14 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 15:56:16 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 15:56:18 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 15:56:20 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 15:56:20 INFO: Results: C:99.3%[S:99.1%,D:0.2%],F:0.5%,M:0.2%,n:440 2022-08-17 15:56:20 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.3%[S:99.1%,D:0.2%],F:0.5%,M:0.2%,n:440 | |437 Complete BUSCOs (C) | |436 Complete and single-copy BUSCOs (S) | |1 Complete and duplicated BUSCOs (D) | |2 Fragmented BUSCOs (F) | |1 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 15:56:20 INFO: BUSCO analysis done. Total running time: 40 seconds 2022-08-17 15:56:20 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_polaris_S4.16.03.2B 2022-08-17 15:56:20 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 15:56:20 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 15:56:21 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 15:56:21 ***** 2022-08-17 15:56:21 INFO: Configuring BUSCO with local environment 2022-08-17 15:56:21 INFO: Mode is genome 2022-08-17 15:56:21 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 15:56:33 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_polaris_SS28.fna 2022-08-17 15:56:34 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 15:56:34 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 15:56:34 2022-08-17 15:56:34 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 15:56:35 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 15:56:35 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 15:56:35 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 15:56:35 2022-08-17 15:56:42 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 15:56:42 INFO: Genetic code 11 selected as optimal 2022-08-17 15:56:42 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 15:56:42 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 15:56:42 2022-08-17 15:56:48 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 15:56:52 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 15:56:55 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 15:56:59 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 15:57:02 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 15:57:05 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 15:57:08 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 15:57:10 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 15:57:11 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 15:57:13 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 15:57:13 INFO: Results: C:99.4%[S:98.9%,D:0.5%],F:0.2%,M:0.4%,n:440 2022-08-17 15:57:13 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.4%[S:98.9%,D:0.5%],F:0.2%,M:0.4%,n:440 | |437 Complete BUSCOs (C) | |435 Complete and single-copy BUSCOs (S) | |2 Complete and duplicated BUSCOs (D) | |1 Fragmented BUSCOs (F) | |2 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 15:57:13 INFO: BUSCO analysis done. Total running time: 40 seconds 2022-08-17 15:57:13 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_polaris_SS28 2022-08-17 15:57:13 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 15:57:13 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 15:57:14 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 15:57:14 ***** 2022-08-17 15:57:14 INFO: Configuring BUSCO with local environment 2022-08-17 15:57:14 INFO: Mode is genome 2022-08-17 15:57:14 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 15:57:27 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_polaris_WBC11.fna 2022-08-17 15:57:27 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 15:57:27 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 15:57:27 2022-08-17 15:57:28 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 15:57:28 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 15:57:28 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 15:57:28 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 15:57:28 2022-08-17 15:57:35 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 15:57:35 INFO: Genetic code 11 selected as optimal 2022-08-17 15:57:35 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 15:57:35 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 15:57:35 2022-08-17 15:57:41 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 15:57:45 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 15:57:48 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 15:57:52 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 15:57:55 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 15:57:58 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 15:58:00 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 15:58:02 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 15:58:04 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 15:58:06 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 15:58:06 INFO: Results: C:99.5%[S:99.3%,D:0.2%],F:0.2%,M:0.3%,n:440 2022-08-17 15:58:06 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.5%[S:99.3%,D:0.2%],F:0.2%,M:0.3%,n:440 | |438 Complete BUSCOs (C) | |437 Complete and single-copy BUSCOs (S) | |1 Complete and duplicated BUSCOs (D) | |1 Fragmented BUSCOs (F) | |1 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 15:58:06 INFO: BUSCO analysis done. Total running time: 40 seconds 2022-08-17 15:58:06 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_polaris_WBC11 2022-08-17 15:58:06 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 15:58:06 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 15:58:07 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 15:58:07 ***** 2022-08-17 15:58:07 INFO: Configuring BUSCO with local environment 2022-08-17 15:58:07 INFO: Mode is genome 2022-08-17 15:58:07 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 15:58:19 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_polaris_WBC1.fna 2022-08-17 15:58:20 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 15:58:20 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 15:58:20 2022-08-17 15:58:20 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 15:58:21 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 15:58:21 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 15:58:21 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 15:58:21 2022-08-17 15:58:28 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 15:58:28 INFO: Genetic code 11 selected as optimal 2022-08-17 15:58:28 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 15:58:28 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 15:58:28 2022-08-17 15:58:33 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 15:58:38 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 15:58:41 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 15:58:45 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 15:58:48 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 15:58:50 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 15:58:53 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 15:58:55 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 15:58:57 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 15:58:59 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 15:58:59 INFO: Results: C:99.5%[S:99.3%,D:0.2%],F:0.2%,M:0.3%,n:440 2022-08-17 15:58:59 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.5%[S:99.3%,D:0.2%],F:0.2%,M:0.3%,n:440 | |438 Complete BUSCOs (C) | |437 Complete and single-copy BUSCOs (S) | |1 Complete and duplicated BUSCOs (D) | |1 Fragmented BUSCOs (F) | |1 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 15:58:59 INFO: BUSCO analysis done. Total running time: 40 seconds 2022-08-17 15:58:59 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_polaris_WBC1 2022-08-17 15:58:59 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 15:58:59 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 15:59:00 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 15:59:00 ***** 2022-08-17 15:59:00 INFO: Configuring BUSCO with local environment 2022-08-17 15:59:00 INFO: Mode is genome 2022-08-17 15:59:00 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 15:59:12 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_polaris_WBC6.fna 2022-08-17 15:59:12 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 15:59:12 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 15:59:12 2022-08-17 15:59:13 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 15:59:13 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 15:59:13 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 15:59:13 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 15:59:13 2022-08-17 15:59:21 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 15:59:21 INFO: Genetic code 11 selected as optimal 2022-08-17 15:59:21 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 15:59:21 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 15:59:21 2022-08-17 15:59:26 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 15:59:30 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 15:59:34 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 15:59:37 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 15:59:41 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 15:59:43 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 15:59:46 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 15:59:48 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 15:59:50 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 15:59:52 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 15:59:52 INFO: Results: C:99.5%[S:99.3%,D:0.2%],F:0.2%,M:0.3%,n:440 2022-08-17 15:59:52 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.5%[S:99.3%,D:0.2%],F:0.2%,M:0.3%,n:440 | |438 Complete BUSCOs (C) | |437 Complete and single-copy BUSCOs (S) | |1 Complete and duplicated BUSCOs (D) | |1 Fragmented BUSCOs (F) | |1 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 15:59:52 INFO: BUSCO analysis done. Total running time: 40 seconds 2022-08-17 15:59:52 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_polaris_WBC6 2022-08-17 15:59:52 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 15:59:52 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 15:59:53 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 15:59:53 ***** 2022-08-17 15:59:53 INFO: Configuring BUSCO with local environment 2022-08-17 15:59:53 INFO: Mode is genome 2022-08-17 15:59:53 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 16:00:05 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_polaris_WBC9.fna 2022-08-17 16:00:05 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 16:00:05 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 16:00:05 2022-08-17 16:00:06 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 16:00:06 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 16:00:06 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 16:00:06 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 16:00:06 2022-08-17 16:00:14 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 16:00:14 INFO: Genetic code 11 selected as optimal 2022-08-17 16:00:14 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 16:00:14 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 16:00:14 2022-08-17 16:00:19 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 16:00:23 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 16:00:26 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 16:00:30 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 16:00:33 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 16:00:36 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 16:00:38 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 16:00:40 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 16:00:42 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 16:00:44 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 16:00:44 INFO: Results: C:99.5%[S:99.3%,D:0.2%],F:0.2%,M:0.3%,n:440 2022-08-17 16:00:44 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.5%[S:99.3%,D:0.2%],F:0.2%,M:0.3%,n:440 | |438 Complete BUSCOs (C) | |437 Complete and single-copy BUSCOs (S) | |1 Complete and duplicated BUSCOs (D) | |1 Fragmented BUSCOs (F) | |1 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 16:00:44 INFO: BUSCO analysis done. Total running time: 39 seconds 2022-08-17 16:00:44 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_polaris_WBC9 2022-08-17 16:00:44 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 16:00:44 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 16:00:45 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 16:00:45 ***** 2022-08-17 16:00:45 INFO: Configuring BUSCO with local environment 2022-08-17 16:00:45 INFO: Mode is genome 2022-08-17 16:00:45 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 16:00:57 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_polonicum_DPMP315.fna 2022-08-17 16:00:57 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 16:00:57 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 16:00:57 2022-08-17 16:00:58 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 16:00:58 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 16:00:58 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 16:00:58 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 16:00:58 2022-08-17 16:01:06 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 16:01:06 INFO: Genetic code 11 selected as optimal 2022-08-17 16:01:06 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 16:01:06 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 16:01:06 2022-08-17 16:01:11 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 16:01:16 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 16:01:19 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 16:01:23 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 16:01:26 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 16:01:28 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 16:01:31 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 16:01:33 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 16:01:35 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 16:01:37 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 16:01:37 INFO: Results: C:99.1%[S:98.4%,D:0.7%],F:0.2%,M:0.7%,n:440 2022-08-17 16:01:37 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.1%[S:98.4%,D:0.7%],F:0.2%,M:0.7%,n:440 | |436 Complete BUSCOs (C) | |433 Complete and single-copy BUSCOs (S) | |3 Complete and duplicated BUSCOs (D) | |1 Fragmented BUSCOs (F) | |3 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 16:01:37 INFO: BUSCO analysis done. Total running time: 40 seconds 2022-08-17 16:01:37 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_polonicum_DPMP315 2022-08-17 16:01:37 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 16:01:37 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 16:01:38 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 16:01:38 ***** 2022-08-17 16:01:38 INFO: Configuring BUSCO with local environment 2022-08-17 16:01:38 INFO: Mode is genome 2022-08-17 16:01:38 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 16:01:50 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_punjabense_IPO_3715SV1490b.fna 2022-08-17 16:01:50 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 16:01:50 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 16:01:50 2022-08-17 16:01:51 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 16:01:51 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 16:01:51 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 16:01:51 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 16:01:51 2022-08-17 16:01:59 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 16:01:59 INFO: Genetic code 11 selected as optimal 2022-08-17 16:01:59 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 16:01:59 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 16:01:59 2022-08-17 16:02:04 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 16:02:08 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 16:02:12 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 16:02:15 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 16:02:18 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 16:02:21 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 16:02:24 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 16:02:26 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 16:02:28 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 16:02:30 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 16:02:30 INFO: Results: C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 2022-08-17 16:02:30 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 | |438 Complete BUSCOs (C) | |436 Complete and single-copy BUSCOs (S) | |2 Complete and duplicated BUSCOs (D) | |1 Fragmented BUSCOs (F) | |1 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 16:02:30 INFO: BUSCO analysis done. Total running time: 40 seconds 2022-08-17 16:02:30 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_punjabense_IPO_3715SV1490b 2022-08-17 16:02:30 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 16:02:30 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 16:02:31 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 16:02:31 ***** 2022-08-17 16:02:31 INFO: Configuring BUSCO with local environment 2022-08-17 16:02:31 INFO: Mode is genome 2022-08-17 16:02:31 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 16:02:43 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_punjabense_P9A19a.fna 2022-08-17 16:02:43 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 16:02:43 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 16:02:43 2022-08-17 16:02:44 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 16:02:44 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 16:02:44 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 16:02:44 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 16:02:44 2022-08-17 16:02:51 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 16:02:52 INFO: Genetic code 11 selected as optimal 2022-08-17 16:02:52 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 16:02:52 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 16:02:52 2022-08-17 16:02:57 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 16:03:02 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 16:03:05 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 16:03:08 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 16:03:12 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 16:03:15 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 16:03:17 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 16:03:19 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 16:03:21 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 16:03:23 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 16:03:23 INFO: Results: C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 2022-08-17 16:03:23 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 | |438 Complete BUSCOs (C) | |436 Complete and single-copy BUSCOs (S) | |2 Complete and duplicated BUSCOs (D) | |1 Fragmented BUSCOs (F) | |1 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 16:03:23 INFO: BUSCO analysis done. Total running time: 40 seconds 2022-08-17 16:03:23 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_punjabense_P9A19a 2022-08-17 16:03:23 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 16:03:23 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 16:03:24 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 16:03:24 ***** 2022-08-17 16:03:24 INFO: Configuring BUSCO with local environment 2022-08-17 16:03:24 INFO: Mode is genome 2022-08-17 16:03:24 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 16:03:36 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_punjabense_RNS08.28.fna 2022-08-17 16:03:37 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 16:03:37 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 16:03:37 2022-08-17 16:03:37 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 16:03:38 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 16:03:38 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 16:03:38 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 16:03:38 2022-08-17 16:03:45 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 16:03:45 INFO: Genetic code 11 selected as optimal 2022-08-17 16:03:45 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 16:03:45 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 16:03:45 2022-08-17 16:03:50 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 16:03:54 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 16:03:57 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 16:04:01 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 16:04:04 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 16:04:07 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 16:04:09 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 16:04:11 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 16:04:13 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 16:04:15 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 16:04:15 INFO: Results: C:99.4%[S:98.9%,D:0.5%],F:0.5%,M:0.1%,n:440 2022-08-17 16:04:15 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.4%[S:98.9%,D:0.5%],F:0.5%,M:0.1%,n:440 | |437 Complete BUSCOs (C) | |435 Complete and single-copy BUSCOs (S) | |2 Complete and duplicated BUSCOs (D) | |2 Fragmented BUSCOs (F) | |1 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 16:04:15 INFO: BUSCO analysis done. Total running time: 39 seconds 2022-08-17 16:04:15 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_punjabense_RNS08.28 2022-08-17 16:04:15 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 16:04:15 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 16:04:16 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 16:04:16 ***** 2022-08-17 16:04:16 INFO: Configuring BUSCO with local environment 2022-08-17 16:04:16 INFO: Mode is genome 2022-08-17 16:04:16 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 16:04:28 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_punjabense_SS95.fna 2022-08-17 16:04:29 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 16:04:29 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 16:04:29 2022-08-17 16:04:29 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 16:04:29 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 16:04:29 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 16:04:29 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 16:04:29 2022-08-17 16:04:37 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 16:04:37 INFO: Genetic code 11 selected as optimal 2022-08-17 16:04:37 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 16:04:37 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 16:04:37 2022-08-17 16:04:42 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 16:04:46 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 16:04:50 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 16:04:53 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 16:04:56 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 16:04:59 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 16:05:01 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 16:05:03 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 16:05:06 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 16:05:07 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 16:05:07 INFO: Results: C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 2022-08-17 16:05:08 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 | |438 Complete BUSCOs (C) | |436 Complete and single-copy BUSCOs (S) | |2 Complete and duplicated BUSCOs (D) | |1 Fragmented BUSCOs (F) | |1 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 16:05:08 INFO: BUSCO analysis done. Total running time: 39 seconds 2022-08-17 16:05:08 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_punjabense_SS95 2022-08-17 16:05:08 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 16:05:08 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 16:05:08 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 16:05:08 ***** 2022-08-17 16:05:08 INFO: Configuring BUSCO with local environment 2022-08-17 16:05:08 INFO: Mode is genome 2022-08-17 16:05:08 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 16:05:21 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_quasiaquaticum_A113-S21-F16.fna 2022-08-17 16:05:21 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 16:05:21 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 16:05:21 2022-08-17 16:05:22 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 16:05:22 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 16:05:22 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 16:05:22 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 16:05:22 2022-08-17 16:05:29 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 16:05:29 INFO: Genetic code 11 selected as optimal 2022-08-17 16:05:29 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 16:05:29 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 16:05:29 2022-08-17 16:05:34 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 16:05:38 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 16:05:41 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 16:05:45 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 16:05:48 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 16:05:50 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 16:05:53 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 16:05:55 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 16:05:57 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 16:05:58 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 16:05:58 INFO: Results: C:99.5%[S:99.3%,D:0.2%],F:0.2%,M:0.3%,n:440 2022-08-17 16:05:58 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.5%[S:99.3%,D:0.2%],F:0.2%,M:0.3%,n:440 | |438 Complete BUSCOs (C) | |437 Complete and single-copy BUSCOs (S) | |1 Complete and duplicated BUSCOs (D) | |1 Fragmented BUSCOs (F) | |1 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 16:05:58 INFO: BUSCO analysis done. Total running time: 38 seconds 2022-08-17 16:05:58 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_quasiaquaticum_A113-S21-F16 2022-08-17 16:05:58 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 16:05:58 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 16:05:59 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 16:05:59 ***** 2022-08-17 16:05:59 INFO: Configuring BUSCO with local environment 2022-08-17 16:05:59 INFO: Mode is genome 2022-08-17 16:05:59 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 16:06:12 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_quasiaquaticum_A398-S21-F17.fna 2022-08-17 16:06:12 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 16:06:12 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 16:06:12 2022-08-17 16:06:13 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 16:06:13 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 16:06:13 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 16:06:13 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 16:06:13 2022-08-17 16:06:19 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 16:06:19 INFO: Genetic code 11 selected as optimal 2022-08-17 16:06:19 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 16:06:19 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 16:06:19 2022-08-17 16:06:24 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 16:06:28 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 16:06:32 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 16:06:35 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 16:06:38 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 16:06:41 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 16:06:43 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 16:06:45 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 16:06:47 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 16:06:49 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 16:06:49 INFO: Results: C:99.5%[S:99.3%,D:0.2%],F:0.2%,M:0.3%,n:440 2022-08-17 16:06:49 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.5%[S:99.3%,D:0.2%],F:0.2%,M:0.3%,n:440 | |438 Complete BUSCOs (C) | |437 Complete and single-copy BUSCOs (S) | |1 Complete and duplicated BUSCOs (D) | |1 Fragmented BUSCOs (F) | |1 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 16:06:49 INFO: BUSCO analysis done. Total running time: 37 seconds 2022-08-17 16:06:49 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_quasiaquaticum_A398-S21-F17 2022-08-17 16:06:49 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 16:06:49 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 16:06:50 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 16:06:50 ***** 2022-08-17 16:06:50 INFO: Configuring BUSCO with local environment 2022-08-17 16:06:50 INFO: Mode is genome 2022-08-17 16:06:50 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 16:07:02 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_quasiaquaticum_A411-S4-F17.fna 2022-08-17 16:07:02 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 16:07:02 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 16:07:02 2022-08-17 16:07:03 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 16:07:03 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 16:07:03 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 16:07:03 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 16:07:03 2022-08-17 16:07:10 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 16:07:10 INFO: Genetic code 11 selected as optimal 2022-08-17 16:07:10 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 16:07:10 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 16:07:10 2022-08-17 16:07:15 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 16:07:19 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 16:07:22 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 16:07:26 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 16:07:29 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 16:07:31 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 16:07:34 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 16:07:36 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 16:07:38 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 16:07:39 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 16:07:39 INFO: Results: C:99.5%[S:99.3%,D:0.2%],F:0.2%,M:0.3%,n:440 2022-08-17 16:07:39 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.5%[S:99.3%,D:0.2%],F:0.2%,M:0.3%,n:440 | |438 Complete BUSCOs (C) | |437 Complete and single-copy BUSCOs (S) | |1 Complete and duplicated BUSCOs (D) | |1 Fragmented BUSCOs (F) | |1 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 16:07:39 INFO: BUSCO analysis done. Total running time: 37 seconds 2022-08-17 16:07:39 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_quasiaquaticum_A411-S4-F17 2022-08-17 16:07:39 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 16:07:39 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 16:07:40 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 16:07:40 ***** 2022-08-17 16:07:40 INFO: Configuring BUSCO with local environment 2022-08-17 16:07:40 INFO: Mode is genome 2022-08-17 16:07:40 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 16:07:53 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_quasiaquaticum_A477-S1-J17.fna 2022-08-17 16:07:53 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 16:07:53 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 16:07:53 2022-08-17 16:07:54 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 16:07:54 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 16:07:54 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 16:07:54 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 16:07:54 2022-08-17 16:08:00 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 16:08:01 INFO: Genetic code 11 selected as optimal 2022-08-17 16:08:01 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 16:08:01 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 16:08:01 2022-08-17 16:08:06 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 16:08:10 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 16:08:14 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 16:08:17 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 16:08:20 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 16:08:23 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 16:08:25 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 16:08:27 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 16:08:29 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 16:08:31 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 16:08:31 INFO: Results: C:99.5%[S:99.3%,D:0.2%],F:0.2%,M:0.3%,n:440 2022-08-17 16:08:31 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.5%[S:99.3%,D:0.2%],F:0.2%,M:0.3%,n:440 | |438 Complete BUSCOs (C) | |437 Complete and single-copy BUSCOs (S) | |1 Complete and duplicated BUSCOs (D) | |1 Fragmented BUSCOs (F) | |1 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 16:08:31 INFO: BUSCO analysis done. Total running time: 38 seconds 2022-08-17 16:08:31 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_quasiaquaticum_A477-S1-J17 2022-08-17 16:08:31 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 16:08:31 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 16:08:32 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 16:08:32 ***** 2022-08-17 16:08:32 INFO: Configuring BUSCO with local environment 2022-08-17 16:08:32 INFO: Mode is genome 2022-08-17 16:08:32 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 16:08:44 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_quasiaquaticum_A535-S3-A17.fna 2022-08-17 16:08:45 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 16:08:45 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 16:08:45 2022-08-17 16:08:45 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 16:08:46 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 16:08:46 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 16:08:46 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 16:08:46 2022-08-17 16:08:52 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 16:08:53 INFO: Genetic code 11 selected as optimal 2022-08-17 16:08:53 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 16:08:53 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 16:08:53 2022-08-17 16:08:57 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 16:09:02 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 16:09:05 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 16:09:08 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 16:09:11 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 16:09:14 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 16:09:17 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 16:09:18 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 16:09:20 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 16:09:22 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 16:09:22 INFO: Results: C:99.5%[S:99.3%,D:0.2%],F:0.2%,M:0.3%,n:440 2022-08-17 16:09:22 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.5%[S:99.3%,D:0.2%],F:0.2%,M:0.3%,n:440 | |438 Complete BUSCOs (C) | |437 Complete and single-copy BUSCOs (S) | |1 Complete and duplicated BUSCOs (D) | |1 Fragmented BUSCOs (F) | |1 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 16:09:22 INFO: BUSCO analysis done. Total running time: 38 seconds 2022-08-17 16:09:22 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_quasiaquaticum_A535-S3-A17 2022-08-17 16:09:22 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 16:09:22 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 16:09:23 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 16:09:23 ***** 2022-08-17 16:09:23 INFO: Configuring BUSCO with local environment 2022-08-17 16:09:23 INFO: Mode is genome 2022-08-17 16:09:23 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 16:09:35 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_quasiaquaticum_FL60-S17.fna 2022-08-17 16:09:36 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 16:09:36 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 16:09:36 2022-08-17 16:09:36 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 16:09:37 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 16:09:37 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 16:09:37 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 16:09:37 2022-08-17 16:09:43 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 16:09:43 INFO: Genetic code 11 selected as optimal 2022-08-17 16:09:43 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 16:09:43 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 16:09:43 2022-08-17 16:09:48 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 16:09:52 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 16:09:56 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 16:09:59 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 16:10:02 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 16:10:05 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 16:10:07 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 16:10:09 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 16:10:11 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 16:10:13 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 16:10:13 INFO: Results: C:99.7%[S:99.5%,D:0.2%],F:0.2%,M:0.1%,n:440 2022-08-17 16:10:13 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.7%[S:99.5%,D:0.2%],F:0.2%,M:0.1%,n:440 | |439 Complete BUSCOs (C) | |438 Complete and single-copy BUSCOs (S) | |1 Complete and duplicated BUSCOs (D) | |1 Fragmented BUSCOs (F) | |0 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 16:10:13 INFO: BUSCO analysis done. Total running time: 38 seconds 2022-08-17 16:10:13 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_quasiaquaticum_FL60-S17 2022-08-17 16:10:13 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 16:10:13 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 16:10:14 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 16:10:14 ***** 2022-08-17 16:10:14 INFO: Configuring BUSCO with local environment 2022-08-17 16:10:14 INFO: Mode is genome 2022-08-17 16:10:14 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 16:10:26 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_quasiaquaticum_FL63-S17.fna 2022-08-17 16:10:26 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 16:10:26 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 16:10:26 2022-08-17 16:10:27 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 16:10:27 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 16:10:27 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 16:10:27 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 16:10:27 2022-08-17 16:10:34 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 16:10:34 INFO: Genetic code 11 selected as optimal 2022-08-17 16:10:34 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 16:10:34 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 16:10:34 2022-08-17 16:10:39 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 16:10:44 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 16:10:47 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 16:10:50 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 16:10:53 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 16:10:56 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 16:10:58 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 16:11:00 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 16:11:02 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 16:11:04 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 16:11:04 INFO: Results: C:99.7%[S:99.5%,D:0.2%],F:0.2%,M:0.1%,n:440 2022-08-17 16:11:04 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.7%[S:99.5%,D:0.2%],F:0.2%,M:0.1%,n:440 | |439 Complete BUSCOs (C) | |438 Complete and single-copy BUSCOs (S) | |1 Complete and duplicated BUSCOs (D) | |1 Fragmented BUSCOs (F) | |0 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 16:11:04 INFO: BUSCO analysis done. Total running time: 38 seconds 2022-08-17 16:11:04 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_quasiaquaticum_FL63-S17 2022-08-17 16:11:04 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 16:11:04 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 16:11:05 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 16:11:05 ***** 2022-08-17 16:11:05 INFO: Configuring BUSCO with local environment 2022-08-17 16:11:05 INFO: Mode is genome 2022-08-17 16:11:05 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 16:11:17 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_sp._CFBP8739_CFBP8739.fna 2022-08-17 16:11:17 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 16:11:17 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 16:11:17 2022-08-17 16:11:18 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 16:11:18 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 16:11:18 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 16:11:18 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 16:11:18 2022-08-17 16:11:25 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 16:11:25 INFO: Genetic code 11 selected as optimal 2022-08-17 16:11:25 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 16:11:25 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 16:11:25 2022-08-17 16:11:30 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 16:11:34 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 16:11:38 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 16:11:41 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 16:11:44 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 16:11:47 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 16:11:50 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 16:11:51 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 16:11:53 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 16:11:55 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 16:11:55 INFO: Results: C:99.5%[S:99.3%,D:0.2%],F:0.2%,M:0.3%,n:440 2022-08-17 16:11:55 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.5%[S:99.3%,D:0.2%],F:0.2%,M:0.3%,n:440 | |438 Complete BUSCOs (C) | |437 Complete and single-copy BUSCOs (S) | |1 Complete and duplicated BUSCOs (D) | |1 Fragmented BUSCOs (F) | |1 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 16:11:55 INFO: BUSCO analysis done. Total running time: 38 seconds 2022-08-17 16:11:55 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_sp._CFBP8739_CFBP8739 2022-08-17 16:11:55 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 16:11:55 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 16:11:56 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 16:11:56 ***** 2022-08-17 16:11:56 INFO: Configuring BUSCO with local environment 2022-08-17 16:11:56 INFO: Mode is genome 2022-08-17 16:11:56 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 16:12:08 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_sp._LJ1_LJ1.fna 2022-08-17 16:12:09 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 16:12:09 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 16:12:09 2022-08-17 16:12:09 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 16:12:09 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 16:12:09 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 16:12:09 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 16:12:09 2022-08-17 16:12:18 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 16:12:18 INFO: Genetic code 11 selected as optimal 2022-08-17 16:12:18 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 16:12:18 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 16:12:18 2022-08-17 16:12:23 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 16:12:28 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 16:12:31 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 16:12:35 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 16:12:38 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 16:12:41 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 16:12:43 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 16:12:45 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 16:12:47 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 16:12:49 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 16:12:49 INFO: Results: C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 2022-08-17 16:12:49 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 | |438 Complete BUSCOs (C) | |436 Complete and single-copy BUSCOs (S) | |2 Complete and duplicated BUSCOs (D) | |1 Fragmented BUSCOs (F) | |1 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 16:12:49 INFO: BUSCO analysis done. Total running time: 41 seconds 2022-08-17 16:12:49 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_sp._LJ1_LJ1 2022-08-17 16:12:49 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 16:12:49 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 16:12:50 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 16:12:50 ***** 2022-08-17 16:12:50 INFO: Configuring BUSCO with local environment 2022-08-17 16:12:50 INFO: Mode is genome 2022-08-17 16:12:50 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 16:13:02 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_versatile_14A.fna 2022-08-17 16:13:03 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 16:13:03 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 16:13:03 2022-08-17 16:13:03 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 16:13:03 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 16:13:03 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 16:13:03 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 16:13:03 2022-08-17 16:13:12 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 16:13:12 INFO: Genetic code 11 selected as optimal 2022-08-17 16:13:12 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 16:13:12 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 16:13:12 2022-08-17 16:13:17 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 16:13:21 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 16:13:25 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 16:13:28 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 16:13:32 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 16:13:35 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 16:13:37 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 16:13:39 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 16:13:42 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 16:13:43 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 16:13:43 INFO: Results: C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 2022-08-17 16:13:43 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 | |438 Complete BUSCOs (C) | |436 Complete and single-copy BUSCOs (S) | |2 Complete and duplicated BUSCOs (D) | |1 Fragmented BUSCOs (F) | |1 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 16:13:43 INFO: BUSCO analysis done. Total running time: 41 seconds 2022-08-17 16:13:43 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_versatile_14A 2022-08-17 16:13:43 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 16:13:43 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 16:13:44 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 16:13:44 ***** 2022-08-17 16:13:44 INFO: Configuring BUSCO with local environment 2022-08-17 16:13:44 INFO: Mode is genome 2022-08-17 16:13:44 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 16:13:57 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_versatile_3-2.fna 2022-08-17 16:13:57 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 16:13:57 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 16:13:57 2022-08-17 16:13:58 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 16:13:58 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 16:13:58 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 16:13:58 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 16:13:58 2022-08-17 16:14:06 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 16:14:06 INFO: Genetic code 11 selected as optimal 2022-08-17 16:14:06 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 16:14:06 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 16:14:06 2022-08-17 16:14:12 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 16:14:16 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 16:14:20 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 16:14:23 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 16:14:27 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 16:14:30 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 16:14:32 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 16:14:34 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 16:14:36 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 16:14:38 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 16:14:38 INFO: Results: C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 2022-08-17 16:14:38 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 | |438 Complete BUSCOs (C) | |436 Complete and single-copy BUSCOs (S) | |2 Complete and duplicated BUSCOs (D) | |1 Fragmented BUSCOs (F) | |1 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 16:14:38 INFO: BUSCO analysis done. Total running time: 41 seconds 2022-08-17 16:14:38 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_versatile_3-2 2022-08-17 16:14:38 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 16:14:38 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 16:14:39 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 16:14:39 ***** 2022-08-17 16:14:39 INFO: Configuring BUSCO with local environment 2022-08-17 16:14:39 INFO: Mode is genome 2022-08-17 16:14:39 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 16:14:52 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_versatile_A095-S3-F16.fna 2022-08-17 16:14:52 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 16:14:52 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 16:14:52 2022-08-17 16:14:53 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 16:14:53 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 16:14:53 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 16:14:53 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 16:14:53 2022-08-17 16:15:01 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 16:15:01 INFO: Genetic code 11 selected as optimal 2022-08-17 16:15:01 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 16:15:01 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 16:15:01 2022-08-17 16:15:06 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 16:15:10 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 16:15:14 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 16:15:17 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 16:15:21 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 16:15:23 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 16:15:26 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 16:15:28 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 16:15:30 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 16:15:32 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 16:15:32 INFO: Results: C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 2022-08-17 16:15:32 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 | |438 Complete BUSCOs (C) | |436 Complete and single-copy BUSCOs (S) | |2 Complete and duplicated BUSCOs (D) | |1 Fragmented BUSCOs (F) | |1 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 16:15:32 INFO: BUSCO analysis done. Total running time: 40 seconds 2022-08-17 16:15:32 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_versatile_A095-S3-F16 2022-08-17 16:15:32 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 16:15:32 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 16:15:33 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 16:15:33 ***** 2022-08-17 16:15:33 INFO: Configuring BUSCO with local environment 2022-08-17 16:15:33 INFO: Mode is genome 2022-08-17 16:15:33 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 16:15:45 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_versatile_A165-S18-M16.fna 2022-08-17 16:15:45 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 16:15:45 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 16:15:45 2022-08-17 16:15:46 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 16:15:46 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 16:15:46 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 16:15:46 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 16:15:46 2022-08-17 16:15:54 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 16:15:54 INFO: Genetic code 11 selected as optimal 2022-08-17 16:15:54 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 16:15:54 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 16:15:54 2022-08-17 16:16:00 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 16:16:04 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 16:16:08 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 16:16:11 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 16:16:14 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 16:16:17 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 16:16:20 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 16:16:22 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 16:16:24 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 16:16:26 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 16:16:26 INFO: Results: C:99.4%[S:98.9%,D:0.5%],F:0.2%,M:0.4%,n:440 2022-08-17 16:16:26 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.4%[S:98.9%,D:0.5%],F:0.2%,M:0.4%,n:440 | |437 Complete BUSCOs (C) | |435 Complete and single-copy BUSCOs (S) | |2 Complete and duplicated BUSCOs (D) | |1 Fragmented BUSCOs (F) | |2 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 16:16:26 INFO: BUSCO analysis done. Total running time: 40 seconds 2022-08-17 16:16:26 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_versatile_A165-S18-M16 2022-08-17 16:16:26 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 16:16:26 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 16:16:26 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 16:16:26 ***** 2022-08-17 16:16:26 INFO: Configuring BUSCO with local environment 2022-08-17 16:16:26 INFO: Mode is genome 2022-08-17 16:16:26 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 16:16:39 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_versatile_A546-S4-A17.fna 2022-08-17 16:16:39 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 16:16:39 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 16:16:39 2022-08-17 16:16:40 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 16:16:40 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 16:16:40 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 16:16:40 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 16:16:40 2022-08-17 16:16:48 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 16:16:48 INFO: Genetic code 11 selected as optimal 2022-08-17 16:16:48 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 16:16:48 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 16:16:48 2022-08-17 16:16:53 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 16:16:58 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 16:17:01 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 16:17:05 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 16:17:08 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 16:17:11 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 16:17:13 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 16:17:15 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 16:17:17 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 16:17:19 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 16:17:19 INFO: Results: C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 2022-08-17 16:17:19 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 | |438 Complete BUSCOs (C) | |436 Complete and single-copy BUSCOs (S) | |2 Complete and duplicated BUSCOs (D) | |1 Fragmented BUSCOs (F) | |1 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 16:17:19 INFO: BUSCO analysis done. Total running time: 40 seconds 2022-08-17 16:17:19 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_versatile_A546-S4-A17 2022-08-17 16:17:19 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 16:17:19 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 16:17:20 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 16:17:20 ***** 2022-08-17 16:17:20 INFO: Configuring BUSCO with local environment 2022-08-17 16:17:20 INFO: Mode is genome 2022-08-17 16:17:20 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 16:17:32 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_versatile_A67-S18-O15.fna 2022-08-17 16:17:33 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 16:17:33 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 16:17:33 2022-08-17 16:17:34 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 16:17:34 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 16:17:34 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 16:17:34 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 16:17:34 2022-08-17 16:17:41 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 16:17:42 INFO: Genetic code 11 selected as optimal 2022-08-17 16:17:42 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 16:17:42 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 16:17:42 2022-08-17 16:17:47 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 16:17:52 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 16:17:55 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 16:17:59 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 16:18:02 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 16:18:05 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 16:18:08 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 16:18:09 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 16:18:11 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 16:18:13 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 16:18:13 INFO: Results: C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 2022-08-17 16:18:13 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 | |438 Complete BUSCOs (C) | |436 Complete and single-copy BUSCOs (S) | |2 Complete and duplicated BUSCOs (D) | |1 Fragmented BUSCOs (F) | |1 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 16:18:13 INFO: BUSCO analysis done. Total running time: 41 seconds 2022-08-17 16:18:13 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_versatile_A67-S18-O15 2022-08-17 16:18:13 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 16:18:13 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 16:18:14 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 16:18:14 ***** 2022-08-17 16:18:14 INFO: Configuring BUSCO with local environment 2022-08-17 16:18:14 INFO: Mode is genome 2022-08-17 16:18:14 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 16:18:27 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_versatile_A69-S13-O15.fna 2022-08-17 16:18:27 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 16:18:27 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 16:18:27 2022-08-17 16:18:28 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 16:18:28 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 16:18:28 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 16:18:28 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 16:18:28 2022-08-17 16:18:35 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 16:18:36 INFO: Genetic code 11 selected as optimal 2022-08-17 16:18:36 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 16:18:36 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 16:18:36 2022-08-17 16:18:41 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 16:18:45 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 16:18:48 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 16:18:52 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 16:18:55 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 16:18:58 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 16:19:01 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 16:19:03 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 16:19:05 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 16:19:07 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 16:19:07 INFO: Results: C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 2022-08-17 16:19:07 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 | |438 Complete BUSCOs (C) | |436 Complete and single-copy BUSCOs (S) | |2 Complete and duplicated BUSCOs (D) | |1 Fragmented BUSCOs (F) | |1 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 16:19:07 INFO: BUSCO analysis done. Total running time: 40 seconds 2022-08-17 16:19:07 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_versatile_A69-S13-O15 2022-08-17 16:19:07 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 16:19:07 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 16:19:08 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 16:19:08 ***** 2022-08-17 16:19:08 INFO: Configuring BUSCO with local environment 2022-08-17 16:19:08 INFO: Mode is genome 2022-08-17 16:19:08 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 16:19:20 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_versatile_A75-S21-O15.fna 2022-08-17 16:19:21 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 16:19:21 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 16:19:21 2022-08-17 16:19:21 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 16:19:21 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 16:19:21 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 16:19:21 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 16:19:21 2022-08-17 16:19:29 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 16:19:29 INFO: Genetic code 11 selected as optimal 2022-08-17 16:19:29 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 16:19:29 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 16:19:29 2022-08-17 16:19:35 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 16:19:39 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 16:19:43 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 16:19:47 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 16:19:50 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 16:19:53 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 16:19:55 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 16:19:57 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 16:20:00 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 16:20:01 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 16:20:01 INFO: Results: C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 2022-08-17 16:20:02 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 | |438 Complete BUSCOs (C) | |436 Complete and single-copy BUSCOs (S) | |2 Complete and duplicated BUSCOs (D) | |1 Fragmented BUSCOs (F) | |1 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 16:20:02 INFO: BUSCO analysis done. Total running time: 41 seconds 2022-08-17 16:20:02 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_versatile_A75-S21-O15 2022-08-17 16:20:02 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 16:20:02 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 16:20:02 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 16:20:02 ***** 2022-08-17 16:20:02 INFO: Configuring BUSCO with local environment 2022-08-17 16:20:02 INFO: Mode is genome 2022-08-17 16:20:02 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 16:20:15 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_versatile_CFBP1118.fna 2022-08-17 16:20:15 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 16:20:15 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 16:20:15 2022-08-17 16:20:16 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 16:20:16 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 16:20:16 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 16:20:16 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 16:20:16 2022-08-17 16:20:23 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 16:20:23 INFO: Genetic code 11 selected as optimal 2022-08-17 16:20:23 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 16:20:23 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 16:20:23 2022-08-17 16:20:29 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 16:20:33 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 16:20:37 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 16:20:40 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 16:20:43 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 16:20:46 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 16:20:49 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 16:20:51 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 16:20:53 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 16:20:55 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 16:20:55 INFO: Results: C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 2022-08-17 16:20:55 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 | |438 Complete BUSCOs (C) | |436 Complete and single-copy BUSCOs (S) | |2 Complete and duplicated BUSCOs (D) | |1 Fragmented BUSCOs (F) | |1 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 16:20:55 INFO: BUSCO analysis done. Total running time: 40 seconds 2022-08-17 16:20:55 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_versatile_CFBP1118 2022-08-17 16:20:55 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 16:20:55 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 16:20:56 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 16:20:56 ***** 2022-08-17 16:20:56 INFO: Configuring BUSCO with local environment 2022-08-17 16:20:56 INFO: Mode is genome 2022-08-17 16:20:56 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 16:21:08 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_versatile_CFBP1552.fna 2022-08-17 16:21:09 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 16:21:09 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 16:21:09 2022-08-17 16:21:09 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 16:21:09 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 16:21:09 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 16:21:09 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 16:21:09 2022-08-17 16:21:17 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 16:21:18 INFO: Genetic code 11 selected as optimal 2022-08-17 16:21:18 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 16:21:18 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 16:21:18 2022-08-17 16:21:23 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 16:21:27 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 16:21:31 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 16:21:34 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 16:21:37 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 16:21:40 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 16:21:43 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 16:21:45 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 16:21:47 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 16:21:48 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 16:21:49 INFO: Results: C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 2022-08-17 16:21:49 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 | |438 Complete BUSCOs (C) | |436 Complete and single-copy BUSCOs (S) | |2 Complete and duplicated BUSCOs (D) | |1 Fragmented BUSCOs (F) | |1 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 16:21:49 INFO: BUSCO analysis done. Total running time: 40 seconds 2022-08-17 16:21:49 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_versatile_CFBP1552 2022-08-17 16:21:49 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 16:21:49 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 16:21:49 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 16:21:49 ***** 2022-08-17 16:21:49 INFO: Configuring BUSCO with local environment 2022-08-17 16:21:49 INFO: Mode is genome 2022-08-17 16:21:49 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 16:22:02 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_versatile_CFBP5378.fna 2022-08-17 16:22:02 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 16:22:02 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 16:22:02 2022-08-17 16:22:03 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 16:22:03 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 16:22:03 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 16:22:03 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 16:22:03 2022-08-17 16:22:11 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 16:22:11 INFO: Genetic code 11 selected as optimal 2022-08-17 16:22:11 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 16:22:11 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 16:22:11 2022-08-17 16:22:17 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 16:22:21 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 16:22:24 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 16:22:28 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 16:22:31 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 16:22:34 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 16:22:37 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 16:22:39 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 16:22:41 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 16:22:43 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 16:22:43 INFO: Results: C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 2022-08-17 16:22:43 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 | |438 Complete BUSCOs (C) | |436 Complete and single-copy BUSCOs (S) | |2 Complete and duplicated BUSCOs (D) | |1 Fragmented BUSCOs (F) | |1 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 16:22:43 INFO: BUSCO analysis done. Total running time: 41 seconds 2022-08-17 16:22:43 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_versatile_CFBP5378 2022-08-17 16:22:43 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 16:22:43 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 16:22:43 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 16:22:43 ***** 2022-08-17 16:22:43 INFO: Configuring BUSCO with local environment 2022-08-17 16:22:43 INFO: Mode is genome 2022-08-17 16:22:43 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 16:22:56 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_versatile_CFBP5663.fna 2022-08-17 16:22:56 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 16:22:56 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 16:22:56 2022-08-17 16:22:57 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 16:22:57 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 16:22:57 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 16:22:57 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 16:22:57 2022-08-17 16:23:05 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 16:23:05 INFO: Genetic code 11 selected as optimal 2022-08-17 16:23:05 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 16:23:05 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 16:23:05 2022-08-17 16:23:11 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 16:23:15 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 16:23:19 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 16:23:22 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 16:23:26 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 16:23:29 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 16:23:31 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 16:23:33 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 16:23:35 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 16:23:37 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 16:23:37 INFO: Results: C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 2022-08-17 16:23:37 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 | |438 Complete BUSCOs (C) | |436 Complete and single-copy BUSCOs (S) | |2 Complete and duplicated BUSCOs (D) | |1 Fragmented BUSCOs (F) | |1 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 16:23:37 INFO: BUSCO analysis done. Total running time: 42 seconds 2022-08-17 16:23:37 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_versatile_CFBP5663 2022-08-17 16:23:37 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 16:23:37 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 16:23:38 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 16:23:38 ***** 2022-08-17 16:23:38 INFO: Configuring BUSCO with local environment 2022-08-17 16:23:38 INFO: Mode is genome 2022-08-17 16:23:38 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 16:23:51 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_versatile_CFBP5669.fna 2022-08-17 16:23:51 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 16:23:51 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 16:23:51 2022-08-17 16:23:52 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 16:23:52 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 16:23:52 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 16:23:52 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 16:23:52 2022-08-17 16:23:59 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 16:24:00 INFO: Genetic code 11 selected as optimal 2022-08-17 16:24:00 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 16:24:00 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 16:24:00 2022-08-17 16:24:05 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 16:24:10 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 16:24:13 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 16:24:16 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 16:24:20 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 16:24:22 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 16:24:25 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 16:24:27 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 16:24:29 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 16:24:31 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 16:24:31 INFO: Results: C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 2022-08-17 16:24:31 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 | |438 Complete BUSCOs (C) | |436 Complete and single-copy BUSCOs (S) | |2 Complete and duplicated BUSCOs (D) | |1 Fragmented BUSCOs (F) | |1 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 16:24:31 INFO: BUSCO analysis done. Total running time: 41 seconds 2022-08-17 16:24:31 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_versatile_CFBP5669 2022-08-17 16:24:31 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 16:24:31 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 16:24:32 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 16:24:32 ***** 2022-08-17 16:24:32 INFO: Configuring BUSCO with local environment 2022-08-17 16:24:32 INFO: Mode is genome 2022-08-17 16:24:32 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 16:24:44 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_versatile_CFBP6051.fna 2022-08-17 16:24:45 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 16:24:45 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 16:24:45 2022-08-17 16:24:45 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 16:24:45 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 16:24:45 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 16:24:45 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 16:24:45 2022-08-17 16:24:53 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 16:24:53 INFO: Genetic code 11 selected as optimal 2022-08-17 16:24:53 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 16:24:53 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 16:24:53 2022-08-17 16:24:59 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 16:25:03 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 16:25:07 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 16:25:10 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 16:25:13 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 16:25:16 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 16:25:19 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 16:25:21 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 16:25:23 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 16:25:25 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 16:25:25 INFO: Results: C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 2022-08-17 16:25:25 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 | |438 Complete BUSCOs (C) | |436 Complete and single-copy BUSCOs (S) | |2 Complete and duplicated BUSCOs (D) | |1 Fragmented BUSCOs (F) | |1 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 16:25:25 INFO: BUSCO analysis done. Total running time: 41 seconds 2022-08-17 16:25:25 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_versatile_CFBP6051 2022-08-17 16:25:25 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 16:25:25 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 16:25:26 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 16:25:26 ***** 2022-08-17 16:25:26 INFO: Configuring BUSCO with local environment 2022-08-17 16:25:26 INFO: Mode is genome 2022-08-17 16:25:26 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 16:25:38 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_versatile_CFBP6698.fna 2022-08-17 16:25:38 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 16:25:38 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 16:25:38 2022-08-17 16:25:39 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 16:25:39 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 16:25:39 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 16:25:39 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 16:25:39 2022-08-17 16:25:47 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 16:25:47 INFO: Genetic code 11 selected as optimal 2022-08-17 16:25:47 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 16:25:47 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 16:25:47 2022-08-17 16:25:53 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 16:25:57 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 16:26:00 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 16:26:04 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 16:26:07 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 16:26:10 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 16:26:13 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 16:26:15 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 16:26:17 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 16:26:18 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 16:26:19 INFO: Results: C:99.4%[S:98.9%,D:0.5%],F:0.5%,M:0.1%,n:440 2022-08-17 16:26:19 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.4%[S:98.9%,D:0.5%],F:0.5%,M:0.1%,n:440 | |437 Complete BUSCOs (C) | |435 Complete and single-copy BUSCOs (S) | |2 Complete and duplicated BUSCOs (D) | |2 Fragmented BUSCOs (F) | |1 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 16:26:19 INFO: BUSCO analysis done. Total running time: 41 seconds 2022-08-17 16:26:19 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_versatile_CFBP6698 2022-08-17 16:26:19 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 16:26:19 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 16:26:19 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 16:26:19 ***** 2022-08-17 16:26:19 INFO: Configuring BUSCO with local environment 2022-08-17 16:26:19 INFO: Mode is genome 2022-08-17 16:26:20 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 16:26:32 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_versatile_DSM30169.fna 2022-08-17 16:26:32 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 16:26:32 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 16:26:32 2022-08-17 16:26:33 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 16:26:33 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 16:26:33 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 16:26:33 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 16:26:33 2022-08-17 16:26:42 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 16:26:42 INFO: Genetic code 11 selected as optimal 2022-08-17 16:26:42 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 16:26:42 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 16:26:42 2022-08-17 16:26:47 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 16:26:52 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 16:26:55 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 16:26:59 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 16:27:02 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 16:27:05 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 16:27:08 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 16:27:10 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 16:27:12 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 16:27:14 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 16:27:14 INFO: Results: C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 2022-08-17 16:27:14 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 | |438 Complete BUSCOs (C) | |436 Complete and single-copy BUSCOs (S) | |2 Complete and duplicated BUSCOs (D) | |1 Fragmented BUSCOs (F) | |1 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 16:27:14 INFO: BUSCO analysis done. Total running time: 42 seconds 2022-08-17 16:27:14 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_versatile_DSM30169 2022-08-17 16:27:14 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 16:27:14 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 16:27:15 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 16:27:15 ***** 2022-08-17 16:27:15 INFO: Configuring BUSCO with local environment 2022-08-17 16:27:15 INFO: Mode is genome 2022-08-17 16:27:15 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 16:27:27 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_versatile_Ecc71.fna 2022-08-17 16:27:28 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 16:27:28 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 16:27:28 2022-08-17 16:27:29 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 16:27:29 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 16:27:29 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 16:27:29 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 16:27:29 2022-08-17 16:27:37 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 16:27:37 INFO: Genetic code 11 selected as optimal 2022-08-17 16:27:37 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 16:27:37 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 16:27:37 2022-08-17 16:27:42 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 16:27:47 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 16:27:50 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 16:27:54 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 16:27:57 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 16:28:00 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 16:28:02 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 16:28:04 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 16:28:07 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 16:28:08 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 16:28:08 INFO: Results: C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 2022-08-17 16:28:09 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 | |438 Complete BUSCOs (C) | |436 Complete and single-copy BUSCOs (S) | |2 Complete and duplicated BUSCOs (D) | |1 Fragmented BUSCOs (F) | |1 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 16:28:09 INFO: BUSCO analysis done. Total running time: 41 seconds 2022-08-17 16:28:09 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_versatile_Ecc71 2022-08-17 16:28:09 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 16:28:09 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 16:28:09 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 16:28:09 ***** 2022-08-17 16:28:09 INFO: Configuring BUSCO with local environment 2022-08-17 16:28:09 INFO: Mode is genome 2022-08-17 16:28:09 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 16:28:22 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_versatile_F018.fna 2022-08-17 16:28:22 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 16:28:22 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 16:28:22 2022-08-17 16:28:23 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 16:28:23 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 16:28:23 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 16:28:23 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 16:28:23 2022-08-17 16:28:31 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 16:28:31 INFO: Genetic code 11 selected as optimal 2022-08-17 16:28:31 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 16:28:31 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 16:28:31 2022-08-17 16:28:36 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 16:28:41 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 16:28:44 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 16:28:48 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 16:28:51 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 16:28:54 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 16:28:57 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 16:28:59 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 16:29:01 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 16:29:03 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 16:29:03 INFO: Results: C:99.1%[S:98.6%,D:0.5%],F:0.2%,M:0.7%,n:440 2022-08-17 16:29:03 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.1%[S:98.6%,D:0.5%],F:0.2%,M:0.7%,n:440 | |436 Complete BUSCOs (C) | |434 Complete and single-copy BUSCOs (S) | |2 Complete and duplicated BUSCOs (D) | |1 Fragmented BUSCOs (F) | |3 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 16:29:03 INFO: BUSCO analysis done. Total running time: 41 seconds 2022-08-17 16:29:03 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_versatile_F018 2022-08-17 16:29:03 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 16:29:03 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 16:29:03 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 16:29:03 ***** 2022-08-17 16:29:03 INFO: Configuring BUSCO with local environment 2022-08-17 16:29:03 INFO: Mode is genome 2022-08-17 16:29:03 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 16:29:16 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_versatile_F131.fna 2022-08-17 16:29:16 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 16:29:16 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 16:29:16 2022-08-17 16:29:17 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 16:29:17 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 16:29:17 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 16:29:17 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 16:29:17 2022-08-17 16:29:25 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 16:29:25 INFO: Genetic code 11 selected as optimal 2022-08-17 16:29:25 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 16:29:25 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 16:29:25 2022-08-17 16:29:30 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 16:29:35 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 16:29:38 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 16:29:42 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 16:29:45 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 16:29:48 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 16:29:50 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 16:29:52 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 16:29:54 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 16:29:56 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 16:29:56 INFO: Results: C:99.4%[S:98.9%,D:0.5%],F:0.5%,M:0.1%,n:440 2022-08-17 16:29:56 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.4%[S:98.9%,D:0.5%],F:0.5%,M:0.1%,n:440 | |437 Complete BUSCOs (C) | |435 Complete and single-copy BUSCOs (S) | |2 Complete and duplicated BUSCOs (D) | |2 Fragmented BUSCOs (F) | |1 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 16:29:56 INFO: BUSCO analysis done. Total running time: 40 seconds 2022-08-17 16:29:56 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_versatile_F131 2022-08-17 16:29:56 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 16:29:56 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 16:29:57 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 16:29:57 ***** 2022-08-17 16:29:57 INFO: Configuring BUSCO with local environment 2022-08-17 16:29:57 INFO: Mode is genome 2022-08-17 16:29:57 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 16:30:09 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_versatile_F135.fna 2022-08-17 16:30:10 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 16:30:10 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 16:30:10 2022-08-17 16:30:10 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 16:30:11 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 16:30:11 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 16:30:11 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 16:30:11 2022-08-17 16:30:18 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 16:30:18 INFO: Genetic code 11 selected as optimal 2022-08-17 16:30:18 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 16:30:18 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 16:30:18 2022-08-17 16:30:23 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 16:30:28 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 16:30:31 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 16:30:34 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 16:30:38 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 16:30:40 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 16:30:43 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 16:30:45 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 16:30:47 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 16:30:49 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 16:30:49 INFO: Results: C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 2022-08-17 16:30:49 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 | |438 Complete BUSCOs (C) | |436 Complete and single-copy BUSCOs (S) | |2 Complete and duplicated BUSCOs (D) | |1 Fragmented BUSCOs (F) | |1 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 16:30:49 INFO: BUSCO analysis done. Total running time: 40 seconds 2022-08-17 16:30:49 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_versatile_F135 2022-08-17 16:30:49 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 16:30:49 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 16:30:50 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 16:30:50 ***** 2022-08-17 16:30:50 INFO: Configuring BUSCO with local environment 2022-08-17 16:30:50 INFO: Mode is genome 2022-08-17 16:30:50 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 16:31:02 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_versatile_F16.fna 2022-08-17 16:31:03 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 16:31:03 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 16:31:03 2022-08-17 16:31:03 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 16:31:03 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 16:31:03 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 16:31:03 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 16:31:03 2022-08-17 16:31:11 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 16:31:11 INFO: Genetic code 11 selected as optimal 2022-08-17 16:31:11 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 16:31:11 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 16:31:11 2022-08-17 16:31:17 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 16:31:21 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 16:31:24 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 16:31:28 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 16:31:31 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 16:31:34 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 16:31:37 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 16:31:39 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 16:31:41 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 16:31:43 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 16:31:43 INFO: Results: C:99.4%[S:98.9%,D:0.5%],F:0.5%,M:0.1%,n:440 2022-08-17 16:31:43 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.4%[S:98.9%,D:0.5%],F:0.5%,M:0.1%,n:440 | |437 Complete BUSCOs (C) | |435 Complete and single-copy BUSCOs (S) | |2 Complete and duplicated BUSCOs (D) | |2 Fragmented BUSCOs (F) | |1 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 16:31:43 INFO: BUSCO analysis done. Total running time: 40 seconds 2022-08-17 16:31:43 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_versatile_F16 2022-08-17 16:31:43 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 16:31:43 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 16:31:43 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 16:31:43 ***** 2022-08-17 16:31:43 INFO: Configuring BUSCO with local environment 2022-08-17 16:31:43 INFO: Mode is genome 2022-08-17 16:31:43 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 16:31:56 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_versatile_IPO_0139NAK_93PCC_139.fna 2022-08-17 16:31:56 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 16:31:56 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 16:31:56 2022-08-17 16:31:57 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 16:31:57 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 16:31:57 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 16:31:57 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 16:31:57 2022-08-17 16:32:05 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 16:32:05 INFO: Genetic code 11 selected as optimal 2022-08-17 16:32:05 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 16:32:05 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 16:32:05 2022-08-17 16:32:10 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 16:32:14 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 16:32:18 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 16:32:21 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 16:32:24 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 16:32:27 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 16:32:30 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 16:32:32 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 16:32:34 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 16:32:36 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 16:32:36 INFO: Results: C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 2022-08-17 16:32:36 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 | |438 Complete BUSCOs (C) | |436 Complete and single-copy BUSCOs (S) | |2 Complete and duplicated BUSCOs (D) | |1 Fragmented BUSCOs (F) | |1 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 16:32:36 INFO: BUSCO analysis done. Total running time: 40 seconds 2022-08-17 16:32:36 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_versatile_IPO_0139NAK_93PCC_139 2022-08-17 16:32:36 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 16:32:36 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 16:32:36 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 16:32:36 ***** 2022-08-17 16:32:36 INFO: Configuring BUSCO with local environment 2022-08-17 16:32:36 INFO: Mode is genome 2022-08-17 16:32:36 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 16:32:49 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_versatile_KC01.fna 2022-08-17 16:32:49 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 16:32:49 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 16:32:49 2022-08-17 16:32:50 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 16:32:50 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 16:32:50 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 16:32:50 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 16:32:50 2022-08-17 16:32:57 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 16:32:58 INFO: Genetic code 11 selected as optimal 2022-08-17 16:32:58 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 16:32:58 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 16:32:58 2022-08-17 16:33:03 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 16:33:07 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 16:33:11 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 16:33:14 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 16:33:18 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 16:33:20 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 16:33:23 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 16:33:25 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 16:33:27 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 16:33:29 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 16:33:29 INFO: Results: C:99.3%[S:99.1%,D:0.2%],F:0.2%,M:0.5%,n:440 2022-08-17 16:33:29 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.3%[S:99.1%,D:0.2%],F:0.2%,M:0.5%,n:440 | |437 Complete BUSCOs (C) | |436 Complete and single-copy BUSCOs (S) | |1 Complete and duplicated BUSCOs (D) | |1 Fragmented BUSCOs (F) | |2 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 16:33:29 INFO: BUSCO analysis done. Total running time: 40 seconds 2022-08-17 16:33:29 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_versatile_KC01 2022-08-17 16:33:29 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 16:33:29 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 16:33:30 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 16:33:30 ***** 2022-08-17 16:33:30 INFO: Configuring BUSCO with local environment 2022-08-17 16:33:30 INFO: Mode is genome 2022-08-17 16:33:30 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 16:33:42 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_versatile_KC02.fna 2022-08-17 16:33:42 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 16:33:42 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 16:33:42 2022-08-17 16:33:43 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 16:33:43 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 16:33:43 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 16:33:43 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 16:33:43 2022-08-17 16:33:51 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 16:33:51 INFO: Genetic code 11 selected as optimal 2022-08-17 16:33:51 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 16:33:51 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 16:33:51 2022-08-17 16:33:56 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 16:34:01 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 16:34:04 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 16:34:07 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 16:34:10 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 16:34:13 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 16:34:15 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 16:34:17 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 16:34:19 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 16:34:21 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 16:34:21 INFO: Results: C:99.4%[S:98.9%,D:0.5%],F:0.2%,M:0.4%,n:440 2022-08-17 16:34:21 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.4%[S:98.9%,D:0.5%],F:0.2%,M:0.4%,n:440 | |437 Complete BUSCOs (C) | |435 Complete and single-copy BUSCOs (S) | |2 Complete and duplicated BUSCOs (D) | |1 Fragmented BUSCOs (F) | |2 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 16:34:21 INFO: BUSCO analysis done. Total running time: 39 seconds 2022-08-17 16:34:21 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_versatile_KC02 2022-08-17 16:34:21 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 16:34:21 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 16:34:22 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 16:34:22 ***** 2022-08-17 16:34:22 INFO: Configuring BUSCO with local environment 2022-08-17 16:34:22 INFO: Mode is genome 2022-08-17 16:34:22 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 16:34:35 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_versatile_KC03.fna 2022-08-17 16:34:35 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 16:34:35 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 16:34:35 2022-08-17 16:34:36 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 16:34:36 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 16:34:36 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 16:34:36 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 16:34:36 2022-08-17 16:34:43 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 16:34:43 INFO: Genetic code 11 selected as optimal 2022-08-17 16:34:43 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 16:34:43 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 16:34:43 2022-08-17 16:34:48 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 16:34:53 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 16:34:56 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 16:35:00 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 16:35:03 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 16:35:06 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 16:35:08 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 16:35:10 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 16:35:12 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 16:35:14 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 16:35:14 INFO: Results: C:99.4%[S:98.9%,D:0.5%],F:0.2%,M:0.4%,n:440 2022-08-17 16:35:14 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.4%[S:98.9%,D:0.5%],F:0.2%,M:0.4%,n:440 | |437 Complete BUSCOs (C) | |435 Complete and single-copy BUSCOs (S) | |2 Complete and duplicated BUSCOs (D) | |1 Fragmented BUSCOs (F) | |2 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 16:35:14 INFO: BUSCO analysis done. Total running time: 40 seconds 2022-08-17 16:35:14 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_versatile_KC03 2022-08-17 16:35:14 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 16:35:14 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 16:35:15 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 16:35:15 ***** 2022-08-17 16:35:15 INFO: Configuring BUSCO with local environment 2022-08-17 16:35:15 INFO: Mode is genome 2022-08-17 16:35:15 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 16:35:28 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_versatile_NAK_227.fna 2022-08-17 16:35:28 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 16:35:28 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 16:35:28 2022-08-17 16:35:29 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 16:35:29 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 16:35:29 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 16:35:29 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 16:35:29 2022-08-17 16:35:37 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 16:35:37 INFO: Genetic code 11 selected as optimal 2022-08-17 16:35:37 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 16:35:37 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 16:35:37 2022-08-17 16:35:42 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 16:35:47 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 16:35:50 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 16:35:54 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 16:35:57 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 16:36:00 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 16:36:02 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 16:36:04 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 16:36:07 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 16:36:08 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 16:36:09 INFO: Results: C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 2022-08-17 16:36:09 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 | |438 Complete BUSCOs (C) | |436 Complete and single-copy BUSCOs (S) | |2 Complete and duplicated BUSCOs (D) | |1 Fragmented BUSCOs (F) | |1 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 16:36:09 INFO: BUSCO analysis done. Total running time: 41 seconds 2022-08-17 16:36:09 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_versatile_NAK_227 2022-08-17 16:36:09 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 16:36:09 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 16:36:09 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 16:36:09 ***** 2022-08-17 16:36:09 INFO: Configuring BUSCO with local environment 2022-08-17 16:36:09 INFO: Mode is genome 2022-08-17 16:36:09 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 16:36:22 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_versatile_NAK_94PCC_163.fna 2022-08-17 16:36:22 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 16:36:22 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 16:36:22 2022-08-17 16:36:23 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 16:36:23 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 16:36:23 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 16:36:23 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 16:36:23 2022-08-17 16:36:31 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 16:36:31 INFO: Genetic code 11 selected as optimal 2022-08-17 16:36:31 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 16:36:31 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 16:36:31 2022-08-17 16:36:36 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 16:36:41 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 16:36:44 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 16:36:48 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 16:36:51 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 16:36:54 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 16:36:57 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 16:36:59 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 16:37:01 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 16:37:03 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 16:37:03 INFO: Results: C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 2022-08-17 16:37:03 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 | |438 Complete BUSCOs (C) | |436 Complete and single-copy BUSCOs (S) | |2 Complete and duplicated BUSCOs (D) | |1 Fragmented BUSCOs (F) | |1 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 16:37:03 INFO: BUSCO analysis done. Total running time: 41 seconds 2022-08-17 16:37:03 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_versatile_NAK_94PCC_163 2022-08-17 16:37:03 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 16:37:03 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 16:37:03 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 16:37:03 ***** 2022-08-17 16:37:03 INFO: Configuring BUSCO with local environment 2022-08-17 16:37:03 INFO: Mode is genome 2022-08-17 16:37:04 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 16:37:16 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_versatile_NY1705A.fna 2022-08-17 16:37:16 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 16:37:16 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 16:37:16 2022-08-17 16:37:17 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 16:37:17 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 16:37:17 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 16:37:17 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 16:37:17 2022-08-17 16:37:25 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 16:37:25 INFO: Genetic code 11 selected as optimal 2022-08-17 16:37:25 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 16:37:25 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 16:37:25 2022-08-17 16:37:31 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 16:37:35 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 16:37:39 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 16:37:42 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 16:37:46 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 16:37:48 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 16:37:51 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 16:37:53 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 16:37:55 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 16:37:57 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 16:37:57 INFO: Results: C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 2022-08-17 16:37:57 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 | |438 Complete BUSCOs (C) | |436 Complete and single-copy BUSCOs (S) | |2 Complete and duplicated BUSCOs (D) | |1 Fragmented BUSCOs (F) | |1 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 16:37:57 INFO: BUSCO analysis done. Total running time: 41 seconds 2022-08-17 16:37:57 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_versatile_NY1705A 2022-08-17 16:37:57 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 16:37:57 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 16:37:58 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 16:37:58 ***** 2022-08-17 16:37:58 INFO: Configuring BUSCO with local environment 2022-08-17 16:37:58 INFO: Mode is genome 2022-08-17 16:37:58 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 16:38:10 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_versatile_NY1715C.fna 2022-08-17 16:38:10 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 16:38:10 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 16:38:10 2022-08-17 16:38:11 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 16:38:11 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 16:38:11 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 16:38:11 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 16:38:11 2022-08-17 16:38:19 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 16:38:19 INFO: Genetic code 11 selected as optimal 2022-08-17 16:38:19 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 16:38:19 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 16:38:19 2022-08-17 16:38:25 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 16:38:29 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 16:38:33 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 16:38:36 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 16:38:39 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 16:38:42 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 16:38:45 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 16:38:47 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 16:38:49 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 16:38:51 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 16:38:51 INFO: Results: C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 2022-08-17 16:38:51 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 | |438 Complete BUSCOs (C) | |436 Complete and single-copy BUSCOs (S) | |2 Complete and duplicated BUSCOs (D) | |1 Fragmented BUSCOs (F) | |1 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 16:38:51 INFO: BUSCO analysis done. Total running time: 41 seconds 2022-08-17 16:38:51 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_versatile_NY1715C 2022-08-17 16:38:51 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 16:38:51 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 16:38:52 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 16:38:52 ***** 2022-08-17 16:38:52 INFO: Configuring BUSCO with local environment 2022-08-17 16:38:52 INFO: Mode is genome 2022-08-17 16:38:52 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 16:39:04 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_versatile_NY1753B.fna 2022-08-17 16:39:05 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 16:39:05 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 16:39:05 2022-08-17 16:39:05 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 16:39:05 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 16:39:05 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 16:39:05 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 16:39:05 2022-08-17 16:39:13 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 16:39:13 INFO: Genetic code 11 selected as optimal 2022-08-17 16:39:13 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 16:39:13 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 16:39:13 2022-08-17 16:39:19 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 16:39:23 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 16:39:26 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 16:39:29 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 16:39:32 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 16:39:35 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 16:39:38 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 16:39:40 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 16:39:42 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 16:39:44 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 16:39:44 INFO: Results: C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 2022-08-17 16:39:44 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 | |438 Complete BUSCOs (C) | |436 Complete and single-copy BUSCOs (S) | |2 Complete and duplicated BUSCOs (D) | |1 Fragmented BUSCOs (F) | |1 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 16:39:44 INFO: BUSCO analysis done. Total running time: 40 seconds 2022-08-17 16:39:44 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_versatile_NY1753B 2022-08-17 16:39:44 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 16:39:44 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 16:39:45 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 16:39:45 ***** 2022-08-17 16:39:45 INFO: Configuring BUSCO with local environment 2022-08-17 16:39:45 INFO: Mode is genome 2022-08-17 16:39:45 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 16:39:57 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_versatile_NY1754A.fna 2022-08-17 16:39:57 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 16:39:57 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 16:39:57 2022-08-17 16:39:58 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 16:39:58 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 16:39:58 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 16:39:58 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 16:39:58 2022-08-17 16:40:06 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 16:40:06 INFO: Genetic code 11 selected as optimal 2022-08-17 16:40:06 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 16:40:06 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 16:40:06 2022-08-17 16:40:12 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 16:40:16 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 16:40:20 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 16:40:23 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 16:40:27 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 16:40:29 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 16:40:32 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 16:40:34 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 16:40:36 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 16:40:38 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 16:40:38 INFO: Results: C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 2022-08-17 16:40:38 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 | |438 Complete BUSCOs (C) | |436 Complete and single-copy BUSCOs (S) | |2 Complete and duplicated BUSCOs (D) | |1 Fragmented BUSCOs (F) | |1 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 16:40:38 INFO: BUSCO analysis done. Total running time: 41 seconds 2022-08-17 16:40:38 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_versatile_NY1754A 2022-08-17 16:40:38 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 16:40:38 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 16:40:39 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 16:40:39 ***** 2022-08-17 16:40:39 INFO: Configuring BUSCO with local environment 2022-08-17 16:40:39 INFO: Mode is genome 2022-08-17 16:40:39 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 16:40:51 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_versatile_NY1762B.fna 2022-08-17 16:40:51 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 16:40:51 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 16:40:51 2022-08-17 16:40:52 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 16:40:52 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 16:40:52 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 16:40:52 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 16:40:52 2022-08-17 16:40:59 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 16:41:00 INFO: Genetic code 11 selected as optimal 2022-08-17 16:41:00 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 16:41:00 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 16:41:00 2022-08-17 16:41:05 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 16:41:09 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 16:41:13 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 16:41:16 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 16:41:19 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 16:41:22 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 16:41:25 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 16:41:27 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 16:41:29 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 16:41:31 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 16:41:31 INFO: Results: C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 2022-08-17 16:41:31 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 | |438 Complete BUSCOs (C) | |436 Complete and single-copy BUSCOs (S) | |2 Complete and duplicated BUSCOs (D) | |1 Fragmented BUSCOs (F) | |1 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 16:41:31 INFO: BUSCO analysis done. Total running time: 40 seconds 2022-08-17 16:41:31 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_versatile_NY1762B 2022-08-17 16:41:31 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 16:41:31 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 16:41:32 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 16:41:32 ***** 2022-08-17 16:41:32 INFO: Configuring BUSCO with local environment 2022-08-17 16:41:32 INFO: Mode is genome 2022-08-17 16:41:32 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 16:41:44 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_versatile_NY1765A.fna 2022-08-17 16:41:44 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 16:41:44 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 16:41:44 2022-08-17 16:41:45 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 16:41:45 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 16:41:45 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 16:41:45 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 16:41:45 2022-08-17 16:41:53 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 16:41:53 INFO: Genetic code 11 selected as optimal 2022-08-17 16:41:53 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 16:41:53 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 16:41:53 2022-08-17 16:41:58 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 16:42:03 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 16:42:06 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 16:42:09 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 16:42:12 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 16:42:15 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 16:42:18 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 16:42:20 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 16:42:22 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 16:42:24 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 16:42:24 INFO: Results: C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 2022-08-17 16:42:24 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 | |438 Complete BUSCOs (C) | |436 Complete and single-copy BUSCOs (S) | |2 Complete and duplicated BUSCOs (D) | |1 Fragmented BUSCOs (F) | |1 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 16:42:24 INFO: BUSCO analysis done. Total running time: 40 seconds 2022-08-17 16:42:24 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_versatile_NY1765A 2022-08-17 16:42:24 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 16:42:24 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 16:42:25 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 16:42:25 ***** 2022-08-17 16:42:25 INFO: Configuring BUSCO with local environment 2022-08-17 16:42:25 INFO: Mode is genome 2022-08-17 16:42:25 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 16:42:37 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_versatile_NY1766A.fna 2022-08-17 16:42:38 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 16:42:38 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 16:42:38 2022-08-17 16:42:39 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 16:42:39 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 16:42:39 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 16:42:39 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 16:42:39 2022-08-17 16:42:46 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 16:42:46 INFO: Genetic code 11 selected as optimal 2022-08-17 16:42:46 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 16:42:46 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 16:42:46 2022-08-17 16:42:51 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 16:42:55 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 16:42:58 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 16:43:02 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 16:43:05 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 16:43:08 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 16:43:10 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 16:43:12 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 16:43:15 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 16:43:16 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 16:43:16 INFO: Results: C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 2022-08-17 16:43:17 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 | |438 Complete BUSCOs (C) | |436 Complete and single-copy BUSCOs (S) | |2 Complete and duplicated BUSCOs (D) | |1 Fragmented BUSCOs (F) | |1 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 16:43:17 INFO: BUSCO analysis done. Total running time: 39 seconds 2022-08-17 16:43:17 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_versatile_NY1766A 2022-08-17 16:43:17 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 16:43:17 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 16:43:17 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 16:43:17 ***** 2022-08-17 16:43:17 INFO: Configuring BUSCO with local environment 2022-08-17 16:43:17 INFO: Mode is genome 2022-08-17 16:43:17 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 16:43:30 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_versatile_NY1788A.fna 2022-08-17 16:43:30 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 16:43:30 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 16:43:30 2022-08-17 16:43:31 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 16:43:31 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 16:43:31 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 16:43:31 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 16:43:31 2022-08-17 16:43:38 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 16:43:39 INFO: Genetic code 11 selected as optimal 2022-08-17 16:43:39 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 16:43:39 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 16:43:39 2022-08-17 16:43:44 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 16:43:48 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 16:43:51 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 16:43:55 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 16:43:58 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 16:44:01 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 16:44:04 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 16:44:06 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 16:44:08 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 16:44:10 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 16:44:10 INFO: Results: C:99.4%[S:98.9%,D:0.5%],F:0.5%,M:0.1%,n:440 2022-08-17 16:44:10 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.4%[S:98.9%,D:0.5%],F:0.5%,M:0.1%,n:440 | |437 Complete BUSCOs (C) | |435 Complete and single-copy BUSCOs (S) | |2 Complete and duplicated BUSCOs (D) | |2 Fragmented BUSCOs (F) | |1 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 16:44:10 INFO: BUSCO analysis done. Total running time: 40 seconds 2022-08-17 16:44:10 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_versatile_NY1788A 2022-08-17 16:44:10 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 16:44:10 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 16:44:11 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 16:44:11 ***** 2022-08-17 16:44:11 INFO: Configuring BUSCO with local environment 2022-08-17 16:44:11 INFO: Mode is genome 2022-08-17 16:44:11 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 16:44:23 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_versatile_PB69.fna 2022-08-17 16:44:24 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 16:44:24 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 16:44:24 2022-08-17 16:44:25 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 16:44:25 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 16:44:25 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 16:44:25 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 16:44:25 2022-08-17 16:44:33 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 16:44:33 INFO: Genetic code 11 selected as optimal 2022-08-17 16:44:33 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 16:44:33 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 16:44:33 2022-08-17 16:44:38 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 16:44:43 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 16:44:46 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 16:44:50 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 16:44:53 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 16:44:56 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 16:44:58 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 16:45:01 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 16:45:03 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 16:45:04 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 16:45:04 INFO: Results: C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 2022-08-17 16:45:05 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 | |438 Complete BUSCOs (C) | |436 Complete and single-copy BUSCOs (S) | |2 Complete and duplicated BUSCOs (D) | |1 Fragmented BUSCOs (F) | |1 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 16:45:05 INFO: BUSCO analysis done. Total running time: 41 seconds 2022-08-17 16:45:05 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_versatile_PB69 2022-08-17 16:45:05 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 16:45:05 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 16:45:05 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 16:45:05 ***** 2022-08-17 16:45:05 INFO: Configuring BUSCO with local environment 2022-08-17 16:45:05 INFO: Mode is genome 2022-08-17 16:45:05 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 16:45:18 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_versatile_PB70.fna 2022-08-17 16:45:18 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 16:45:18 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 16:45:18 2022-08-17 16:45:19 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 16:45:19 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 16:45:19 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 16:45:19 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 16:45:19 2022-08-17 16:45:27 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 16:45:27 INFO: Genetic code 11 selected as optimal 2022-08-17 16:45:27 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 16:45:27 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 16:45:27 2022-08-17 16:45:32 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 16:45:37 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 16:45:40 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 16:45:44 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 16:45:47 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 16:45:50 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 16:45:52 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 16:45:54 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 16:45:57 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 16:45:58 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 16:45:58 INFO: Results: C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 2022-08-17 16:45:59 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 | |438 Complete BUSCOs (C) | |436 Complete and single-copy BUSCOs (S) | |2 Complete and duplicated BUSCOs (D) | |1 Fragmented BUSCOs (F) | |1 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 16:45:59 INFO: BUSCO analysis done. Total running time: 41 seconds 2022-08-17 16:45:59 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_versatile_PB70 2022-08-17 16:45:59 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 16:45:59 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 16:45:59 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 16:45:59 ***** 2022-08-17 16:45:59 INFO: Configuring BUSCO with local environment 2022-08-17 16:45:59 INFO: Mode is genome 2022-08-17 16:45:59 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 16:46:12 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_versatile_RMIT1.fna 2022-08-17 16:46:12 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 16:46:12 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 16:46:12 2022-08-17 16:46:13 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 16:46:13 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 16:46:13 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 16:46:13 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 16:46:13 2022-08-17 16:46:21 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 16:46:21 INFO: Genetic code 11 selected as optimal 2022-08-17 16:46:21 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 16:46:21 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 16:46:21 2022-08-17 16:46:26 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 16:46:30 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 16:46:34 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 16:46:37 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 16:46:40 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 16:46:43 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 16:46:46 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 16:46:48 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 16:46:50 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 16:46:52 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 16:46:52 INFO: Results: C:99.4%[S:98.9%,D:0.5%],F:0.5%,M:0.1%,n:440 2022-08-17 16:46:52 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.4%[S:98.9%,D:0.5%],F:0.5%,M:0.1%,n:440 | |437 Complete BUSCOs (C) | |435 Complete and single-copy BUSCOs (S) | |2 Complete and duplicated BUSCOs (D) | |2 Fragmented BUSCOs (F) | |1 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 16:46:52 INFO: BUSCO analysis done. Total running time: 41 seconds 2022-08-17 16:46:52 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_versatile_RMIT1 2022-08-17 16:46:52 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 16:46:52 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 16:46:53 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 16:46:53 ***** 2022-08-17 16:46:53 INFO: Configuring BUSCO with local environment 2022-08-17 16:46:53 INFO: Mode is genome 2022-08-17 16:46:53 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 16:47:05 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_versatile_S4.16.03.3F.fna 2022-08-17 16:47:06 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 16:47:06 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 16:47:06 2022-08-17 16:47:06 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 16:47:06 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 16:47:06 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 16:47:06 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 16:47:06 2022-08-17 16:47:14 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 16:47:14 INFO: Genetic code 11 selected as optimal 2022-08-17 16:47:14 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 16:47:14 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 16:47:14 2022-08-17 16:47:20 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 16:47:24 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 16:47:27 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 16:47:30 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 16:47:33 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 16:47:36 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 16:47:39 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 16:47:41 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 16:47:43 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 16:47:45 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 16:47:45 INFO: Results: C:99.4%[S:98.9%,D:0.5%],F:0.5%,M:0.1%,n:440 2022-08-17 16:47:45 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.4%[S:98.9%,D:0.5%],F:0.5%,M:0.1%,n:440 | |437 Complete BUSCOs (C) | |435 Complete and single-copy BUSCOs (S) | |2 Complete and duplicated BUSCOs (D) | |2 Fragmented BUSCOs (F) | |1 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 16:47:45 INFO: BUSCO analysis done. Total running time: 40 seconds 2022-08-17 16:47:45 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_versatile_S4.16.03.3F 2022-08-17 16:47:45 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 16:47:45 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 16:47:46 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 16:47:46 ***** 2022-08-17 16:47:46 INFO: Configuring BUSCO with local environment 2022-08-17 16:47:46 INFO: Mode is genome 2022-08-17 16:47:46 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 16:47:58 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_versatile_S4.16.03.3I.fna 2022-08-17 16:47:58 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 16:47:58 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 16:47:58 2022-08-17 16:47:59 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 16:47:59 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 16:47:59 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 16:47:59 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 16:47:59 2022-08-17 16:48:07 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 16:48:07 INFO: Genetic code 11 selected as optimal 2022-08-17 16:48:07 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 16:48:07 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 16:48:07 2022-08-17 16:48:12 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 16:48:17 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 16:48:20 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 16:48:23 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 16:48:27 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 16:48:30 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 16:48:32 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 16:48:34 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 16:48:36 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 16:48:38 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 16:48:38 INFO: Results: C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 2022-08-17 16:48:38 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 | |438 Complete BUSCOs (C) | |436 Complete and single-copy BUSCOs (S) | |2 Complete and duplicated BUSCOs (D) | |1 Fragmented BUSCOs (F) | |1 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 16:48:38 INFO: BUSCO analysis done. Total running time: 40 seconds 2022-08-17 16:48:38 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_versatile_S4.16.03.3I 2022-08-17 16:48:38 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 16:48:38 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 16:48:39 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 16:48:39 ***** 2022-08-17 16:48:39 INFO: Configuring BUSCO with local environment 2022-08-17 16:48:39 INFO: Mode is genome 2022-08-17 16:48:39 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 16:48:51 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_versatile_S4.16.03.3K.fna 2022-08-17 16:48:52 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 16:48:52 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 16:48:52 2022-08-17 16:48:52 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 16:48:52 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 16:48:52 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 16:48:52 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 16:48:52 2022-08-17 16:49:00 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 16:49:00 INFO: Genetic code 11 selected as optimal 2022-08-17 16:49:00 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 16:49:00 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 16:49:00 2022-08-17 16:49:06 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 16:49:10 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 16:49:13 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 16:49:17 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 16:49:20 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 16:49:23 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 16:49:26 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 16:49:28 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 16:49:30 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 16:49:31 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 16:49:31 INFO: Results: C:99.4%[S:98.9%,D:0.5%],F:0.5%,M:0.1%,n:440 2022-08-17 16:49:31 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.4%[S:98.9%,D:0.5%],F:0.5%,M:0.1%,n:440 | |437 Complete BUSCOs (C) | |435 Complete and single-copy BUSCOs (S) | |2 Complete and duplicated BUSCOs (D) | |2 Fragmented BUSCOs (F) | |1 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 16:49:31 INFO: BUSCO analysis done. Total running time: 40 seconds 2022-08-17 16:49:31 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_versatile_S4.16.03.3K 2022-08-17 16:49:31 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 16:49:31 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 16:49:32 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 16:49:32 ***** 2022-08-17 16:49:32 INFO: Configuring BUSCO with local environment 2022-08-17 16:49:32 INFO: Mode is genome 2022-08-17 16:49:32 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 16:49:45 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_versatile_SCC1.fna 2022-08-17 16:49:45 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 16:49:45 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 16:49:45 2022-08-17 16:49:46 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 16:49:46 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 16:49:46 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 16:49:46 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 16:49:46 2022-08-17 16:49:54 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 16:49:54 INFO: Genetic code 11 selected as optimal 2022-08-17 16:49:54 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 16:49:54 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 16:49:54 2022-08-17 16:49:59 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 16:50:03 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 16:50:07 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 16:50:11 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 16:50:14 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 16:50:17 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 16:50:19 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 16:50:21 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 16:50:23 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 16:50:25 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 16:50:25 INFO: Results: C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 2022-08-17 16:50:25 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 | |438 Complete BUSCOs (C) | |436 Complete and single-copy BUSCOs (S) | |2 Complete and duplicated BUSCOs (D) | |1 Fragmented BUSCOs (F) | |1 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 16:50:25 INFO: BUSCO analysis done. Total running time: 41 seconds 2022-08-17 16:50:25 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_versatile_SCC1 2022-08-17 16:50:25 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 16:50:25 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 16:50:26 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 16:50:26 ***** 2022-08-17 16:50:26 INFO: Configuring BUSCO with local environment 2022-08-17 16:50:26 INFO: Mode is genome 2022-08-17 16:50:26 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 16:50:39 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_versatile_SR12.fna 2022-08-17 16:50:39 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 16:50:39 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 16:50:39 2022-08-17 16:50:40 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 16:50:40 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 16:50:40 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 16:50:40 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 16:50:40 2022-08-17 16:50:48 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 16:50:48 INFO: Genetic code 11 selected as optimal 2022-08-17 16:50:48 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 16:50:48 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 16:50:48 2022-08-17 16:50:54 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 16:50:58 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 16:51:01 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 16:51:05 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 16:51:08 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 16:51:11 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 16:51:14 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 16:51:16 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 16:51:18 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 16:51:20 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 16:51:20 INFO: Results: C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 2022-08-17 16:51:20 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 | |438 Complete BUSCOs (C) | |436 Complete and single-copy BUSCOs (S) | |2 Complete and duplicated BUSCOs (D) | |1 Fragmented BUSCOs (F) | |1 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 16:51:20 INFO: BUSCO analysis done. Total running time: 41 seconds 2022-08-17 16:51:20 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_versatile_SR12 2022-08-17 16:51:20 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 16:51:20 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 16:51:21 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 16:51:21 ***** 2022-08-17 16:51:21 INFO: Configuring BUSCO with local environment 2022-08-17 16:51:21 INFO: Mode is genome 2022-08-17 16:51:21 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 16:51:33 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_versatile_SR1.fna 2022-08-17 16:51:33 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 16:51:33 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 16:51:33 2022-08-17 16:51:34 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 16:51:34 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 16:51:34 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 16:51:34 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 16:51:34 2022-08-17 16:51:43 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 16:51:43 INFO: Genetic code 11 selected as optimal 2022-08-17 16:51:43 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 16:51:43 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 16:51:43 2022-08-17 16:51:48 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 16:51:52 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 16:51:56 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 16:51:59 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 16:52:03 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 16:52:05 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 16:52:08 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 16:52:10 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 16:52:12 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 16:52:14 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 16:52:14 INFO: Results: C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 2022-08-17 16:52:14 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 | |438 Complete BUSCOs (C) | |436 Complete and single-copy BUSCOs (S) | |2 Complete and duplicated BUSCOs (D) | |1 Fragmented BUSCOs (F) | |1 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 16:52:14 INFO: BUSCO analysis done. Total running time: 41 seconds 2022-08-17 16:52:14 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_versatile_SR1 2022-08-17 16:52:14 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 16:52:14 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 16:52:15 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 16:52:15 ***** 2022-08-17 16:52:15 INFO: Configuring BUSCO with local environment 2022-08-17 16:52:15 INFO: Mode is genome 2022-08-17 16:52:15 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 16:52:27 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_versatile_SR2.fna 2022-08-17 16:52:28 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 16:52:28 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 16:52:28 2022-08-17 16:52:29 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 16:52:29 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 16:52:29 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 16:52:29 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 16:52:29 2022-08-17 16:52:37 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 16:52:37 INFO: Genetic code 11 selected as optimal 2022-08-17 16:52:37 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 16:52:37 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 16:52:37 2022-08-17 16:52:42 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 16:52:47 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 16:52:50 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 16:52:54 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 16:52:57 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 16:53:00 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 16:53:03 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 16:53:05 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 16:53:07 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 16:53:09 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 16:53:09 INFO: Results: C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 2022-08-17 16:53:09 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 | |438 Complete BUSCOs (C) | |436 Complete and single-copy BUSCOs (S) | |2 Complete and duplicated BUSCOs (D) | |1 Fragmented BUSCOs (F) | |1 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 16:53:09 INFO: BUSCO analysis done. Total running time: 42 seconds 2022-08-17 16:53:09 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_versatile_SR2 2022-08-17 16:53:09 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 16:53:09 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 16:53:10 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 16:53:10 ***** 2022-08-17 16:53:10 INFO: Configuring BUSCO with local environment 2022-08-17 16:53:10 INFO: Mode is genome 2022-08-17 16:53:10 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 16:53:22 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_versatile_SR3.fna 2022-08-17 16:53:22 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 16:53:22 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 16:53:22 2022-08-17 16:53:23 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 16:53:23 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 16:53:23 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 16:53:23 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 16:53:23 2022-08-17 16:53:31 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 16:53:31 INFO: Genetic code 11 selected as optimal 2022-08-17 16:53:31 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 16:53:31 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 16:53:31 2022-08-17 16:53:37 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 16:53:41 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 16:53:45 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 16:53:48 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 16:53:52 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 16:53:54 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 16:53:57 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 16:53:59 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 16:54:01 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 16:54:03 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 16:54:03 INFO: Results: C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 2022-08-17 16:54:03 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 | |438 Complete BUSCOs (C) | |436 Complete and single-copy BUSCOs (S) | |2 Complete and duplicated BUSCOs (D) | |1 Fragmented BUSCOs (F) | |1 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 16:54:03 INFO: BUSCO analysis done. Total running time: 41 seconds 2022-08-17 16:54:03 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_versatile_SR3 2022-08-17 16:54:03 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 16:54:03 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 16:54:04 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 16:54:04 ***** 2022-08-17 16:54:04 INFO: Configuring BUSCO with local environment 2022-08-17 16:54:04 INFO: Mode is genome 2022-08-17 16:54:04 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 16:54:16 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_versatile_SR4.fna 2022-08-17 16:54:16 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 16:54:16 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 16:54:16 2022-08-17 16:54:17 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 16:54:17 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 16:54:17 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 16:54:17 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 16:54:17 2022-08-17 16:54:25 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 16:54:25 INFO: Genetic code 11 selected as optimal 2022-08-17 16:54:25 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 16:54:25 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 16:54:25 2022-08-17 16:54:30 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 16:54:34 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 16:54:38 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 16:54:41 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 16:54:45 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 16:54:47 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 16:54:50 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 16:54:52 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 16:54:54 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 16:54:56 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 16:54:56 INFO: Results: C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 2022-08-17 16:54:56 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 | |438 Complete BUSCOs (C) | |436 Complete and single-copy BUSCOs (S) | |2 Complete and duplicated BUSCOs (D) | |1 Fragmented BUSCOs (F) | |1 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 16:54:56 INFO: BUSCO analysis done. Total running time: 40 seconds 2022-08-17 16:54:56 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_versatile_SR4 2022-08-17 16:54:56 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 16:54:56 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 16:54:57 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 16:54:57 ***** 2022-08-17 16:54:57 INFO: Configuring BUSCO with local environment 2022-08-17 16:54:57 INFO: Mode is genome 2022-08-17 16:54:57 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 16:55:10 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_versatile_SS96.fna 2022-08-17 16:55:10 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 16:55:10 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 16:55:10 2022-08-17 16:55:11 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 16:55:11 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 16:55:11 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 16:55:11 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 16:55:11 2022-08-17 16:55:18 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 16:55:18 INFO: Genetic code 11 selected as optimal 2022-08-17 16:55:18 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 16:55:18 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 16:55:18 2022-08-17 16:55:24 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 16:55:29 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 16:55:32 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 16:55:35 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 16:55:39 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 16:55:42 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 16:55:44 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 16:55:46 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 16:55:48 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 16:55:50 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 16:55:50 INFO: Results: C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 2022-08-17 16:55:50 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 | |438 Complete BUSCOs (C) | |436 Complete and single-copy BUSCOs (S) | |2 Complete and duplicated BUSCOs (D) | |1 Fragmented BUSCOs (F) | |1 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 16:55:50 INFO: BUSCO analysis done. Total running time: 41 seconds 2022-08-17 16:55:50 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_versatile_SS96 2022-08-17 16:55:50 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 16:55:50 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 16:55:51 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 16:55:51 ***** 2022-08-17 16:55:51 INFO: Configuring BUSCO with local environment 2022-08-17 16:55:51 INFO: Mode is genome 2022-08-17 16:55:51 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 16:56:04 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_versatile_WS2152.fna 2022-08-17 16:56:04 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 16:56:04 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 16:56:04 2022-08-17 16:56:05 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 16:56:05 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 16:56:05 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 16:56:05 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 16:56:05 2022-08-17 16:56:12 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 16:56:13 INFO: Genetic code 11 selected as optimal 2022-08-17 16:56:13 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 16:56:13 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 16:56:13 2022-08-17 16:56:18 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 16:56:21 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 16:56:25 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 16:56:28 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 16:56:31 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 16:56:34 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 16:56:37 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 16:56:39 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 16:56:41 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 16:56:43 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 16:56:43 INFO: Results: C:97.1%[S:96.6%,D:0.5%],F:2.0%,M:0.9%,n:440 2022-08-17 16:56:43 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:97.1%[S:96.6%,D:0.5%],F:2.0%,M:0.9%,n:440 | |427 Complete BUSCOs (C) | |425 Complete and single-copy BUSCOs (S) | |2 Complete and duplicated BUSCOs (D) | |9 Fragmented BUSCOs (F) | |4 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 16:56:43 INFO: BUSCO analysis done. Total running time: 39 seconds 2022-08-17 16:56:43 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_versatile_WS2152 2022-08-17 16:56:43 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 16:56:43 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 16:56:44 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 16:56:44 ***** 2022-08-17 16:56:44 INFO: Configuring BUSCO with local environment 2022-08-17 16:56:44 INFO: Mode is genome 2022-08-17 16:56:44 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 16:56:56 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_wasabiae_CFBP_3304_CFBP3304.fna 2022-08-17 16:56:56 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 16:56:56 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 16:56:56 2022-08-17 16:56:57 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 16:56:57 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 16:56:57 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 16:56:57 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 16:56:57 2022-08-17 16:57:05 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 16:57:05 INFO: Genetic code 11 selected as optimal 2022-08-17 16:57:05 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 16:57:05 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 16:57:05 2022-08-17 16:57:11 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 16:57:15 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 16:57:19 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 16:57:22 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 16:57:26 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 16:57:28 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 16:57:31 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 16:57:33 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 16:57:35 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 16:57:37 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 16:57:37 INFO: Results: C:98.9%[S:98.4%,D:0.5%],F:0.7%,M:0.4%,n:440 2022-08-17 16:57:37 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:98.9%[S:98.4%,D:0.5%],F:0.7%,M:0.4%,n:440 | |435 Complete BUSCOs (C) | |433 Complete and single-copy BUSCOs (S) | |2 Complete and duplicated BUSCOs (D) | |3 Fragmented BUSCOs (F) | |2 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 16:57:37 INFO: BUSCO analysis done. Total running time: 41 seconds 2022-08-17 16:57:37 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_wasabiae_CFBP_3304_CFBP3304 2022-08-17 16:57:37 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 16:57:37 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 16:57:38 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 16:57:38 ***** 2022-08-17 16:57:38 INFO: Configuring BUSCO with local environment 2022-08-17 16:57:38 INFO: Mode is genome 2022-08-17 16:57:38 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 16:57:50 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_wasabiae_NCPPB3701.fna 2022-08-17 16:57:51 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 16:57:51 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 16:57:51 2022-08-17 16:57:51 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 16:57:52 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 16:57:52 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 16:57:52 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 16:57:52 2022-08-17 16:57:59 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 16:58:00 INFO: Genetic code 11 selected as optimal 2022-08-17 16:58:00 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 16:58:00 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 16:58:00 2022-08-17 16:58:05 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 16:58:10 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 16:58:13 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 16:58:17 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 16:58:20 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 16:58:23 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 16:58:25 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 16:58:27 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 16:58:29 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 16:58:31 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 16:58:31 INFO: Results: C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 2022-08-17 16:58:31 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 | |438 Complete BUSCOs (C) | |436 Complete and single-copy BUSCOs (S) | |2 Complete and duplicated BUSCOs (D) | |1 Fragmented BUSCOs (F) | |1 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 16:58:31 INFO: BUSCO analysis done. Total running time: 41 seconds 2022-08-17 16:58:31 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_wasabiae_NCPPB3701 2022-08-17 16:58:31 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 16:58:31 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 16:58:32 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 16:58:32 ***** 2022-08-17 16:58:32 INFO: Configuring BUSCO with local environment 2022-08-17 16:58:32 INFO: Mode is genome 2022-08-17 16:58:32 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 16:58:45 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_wasabiae_NCPPB3702.fna 2022-08-17 16:58:45 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 16:58:45 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 16:58:45 2022-08-17 16:58:46 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 16:58:46 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 16:58:46 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 16:58:46 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 16:58:46 2022-08-17 16:58:54 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 16:58:54 INFO: Genetic code 11 selected as optimal 2022-08-17 16:58:54 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 16:58:54 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 16:58:54 2022-08-17 16:58:59 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 16:59:04 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 16:59:07 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 16:59:11 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 16:59:14 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 16:59:17 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 16:59:20 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 16:59:22 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 16:59:24 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 16:59:25 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 16:59:26 INFO: Results: C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 2022-08-17 16:59:26 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 | |438 Complete BUSCOs (C) | |436 Complete and single-copy BUSCOs (S) | |2 Complete and duplicated BUSCOs (D) | |1 Fragmented BUSCOs (F) | |1 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 16:59:26 INFO: BUSCO analysis done. Total running time: 41 seconds 2022-08-17 16:59:26 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_wasabiae_NCPPB3702 2022-08-17 16:59:26 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 16:59:26 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 16:59:26 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 16:59:26 ***** 2022-08-17 16:59:26 INFO: Configuring BUSCO with local environment 2022-08-17 16:59:26 INFO: Mode is genome 2022-08-17 16:59:26 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 16:59:39 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_zantedeschiae_2M.fna 2022-08-17 16:59:39 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 16:59:39 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 16:59:39 2022-08-17 16:59:40 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 16:59:40 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 16:59:40 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 16:59:40 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 16:59:40 2022-08-17 16:59:48 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 16:59:48 INFO: Genetic code 11 selected as optimal 2022-08-17 16:59:48 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 16:59:48 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 16:59:48 2022-08-17 16:59:53 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 16:59:58 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 17:00:01 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 17:00:05 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 17:00:08 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 17:00:11 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 17:00:13 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 17:00:15 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 17:00:17 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 17:00:19 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 17:00:19 INFO: Results: C:83.4%[S:72.0%,D:11.4%],F:0.5%,M:16.1%,n:440 2022-08-17 17:00:19 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:83.4%[S:72.0%,D:11.4%],F:0.5%,M:16.1%,n:440 | |367 Complete BUSCOs (C) | |317 Complete and single-copy BUSCOs (S) | |50 Complete and duplicated BUSCOs (D) | |2 Fragmented BUSCOs (F) | |71 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 17:00:19 INFO: BUSCO analysis done. Total running time: 40 seconds 2022-08-17 17:00:19 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_zantedeschiae_2M 2022-08-17 17:00:19 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 17:00:19 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 17:00:20 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 17:00:20 ***** 2022-08-17 17:00:20 INFO: Configuring BUSCO with local environment 2022-08-17 17:00:20 INFO: Mode is genome 2022-08-17 17:00:20 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 17:00:32 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_zantedeschiae_9M.fna 2022-08-17 17:00:33 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 17:00:33 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 17:00:33 2022-08-17 17:00:34 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 17:00:34 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 17:00:34 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 17:00:34 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 17:00:34 2022-08-17 17:00:41 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 17:00:42 INFO: Genetic code 11 selected as optimal 2022-08-17 17:00:42 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 17:00:42 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 17:00:42 2022-08-17 17:00:47 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 17:00:51 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 17:00:54 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 17:00:58 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 17:01:01 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 17:01:04 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 17:01:07 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 17:01:09 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 17:01:11 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 17:01:13 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 17:01:13 INFO: Results: C:99.6%[S:98.9%,D:0.7%],F:0.2%,M:0.2%,n:440 2022-08-17 17:01:13 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.6%[S:98.9%,D:0.7%],F:0.2%,M:0.2%,n:440 | |438 Complete BUSCOs (C) | |435 Complete and single-copy BUSCOs (S) | |3 Complete and duplicated BUSCOs (D) | |1 Fragmented BUSCOs (F) | |1 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 17:01:13 INFO: BUSCO analysis done. Total running time: 40 seconds 2022-08-17 17:01:13 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_zantedeschiae_9M 2022-08-17 17:01:13 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 17:01:13 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-17 17:01:13 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/17/2022 17:01:13 ***** 2022-08-17 17:01:13 INFO: Configuring BUSCO with local environment 2022-08-17 17:01:13 INFO: Mode is genome 2022-08-17 17:01:13 INFO: Downloading information on latest versions of BUSCO data... 2022-08-17 17:01:26 INFO: Input file is /disk3/default/V2/admin/core/data/Pectobacterium/Pectobacterium_zantedeschiae_PC2.fna 2022-08-17 17:01:26 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-17 17:01:26 INFO: Running 1 job(s) on bbtools, starting at 08/17/2022 17:01:26 2022-08-17 17:01:27 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-17 17:01:27 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-17 17:01:27 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-17 17:01:27 INFO: Running 1 job(s) on prodigal, starting at 08/17/2022 17:01:27 2022-08-17 17:01:35 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-17 17:01:35 INFO: Genetic code 11 selected as optimal 2022-08-17 17:01:35 INFO: ***** Run HMMER on gene sequences ***** 2022-08-17 17:01:35 INFO: Running 440 job(s) on hmmsearch, starting at 08/17/2022 17:01:35 2022-08-17 17:01:41 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-17 17:01:46 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-17 17:01:49 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-17 17:01:53 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-17 17:01:56 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-17 17:01:59 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-17 17:02:02 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-17 17:02:04 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-17 17:02:06 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-17 17:02:07 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-17 17:02:08 INFO: Results: C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 2022-08-17 17:02:08 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.6%[S:99.1%,D:0.5%],F:0.2%,M:0.2%,n:440 | |438 Complete BUSCOs (C) | |436 Complete and single-copy BUSCOs (S) | |2 Complete and duplicated BUSCOs (D) | |1 Fragmented BUSCOs (F) | |1 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-17 17:02:08 INFO: BUSCO analysis done. Total running time: 42 seconds 2022-08-17 17:02:08 INFO: Results written in /disk3/default/V2/admin/core/data/Pectobacterium/outBusco/Pectobacterium_zantedeschiae_PC2 2022-08-17 17:02:08 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-17 17:02:08 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO Found 318 BUSCO runs: run_Pectobacterium_brasiliense_IPO_4060NAK_251 run_Pectobacterium_aquaticum_A101-S19-F16 run_Pectobacterium_brasiliense_ZLMLSHJ5 run_Pectobacterium_carotovorum_A280-S2-N16 run_Pectobacterium_odoriferum_Q106 run_Pectobacterium_sp._LJ1_LJ1 run_Pectobacterium_versatile_NY1766A run_Pectobacterium_brasiliense_Y65 run_Pectobacterium_carotovorum_DSM30168 run_Pectobacterium_carotovorum_subsp._carotovorum_PC1_PC1 run_Pectobacterium_versatile_NY1788A run_Pectobacterium_carotovorum_A694-S13-N17 run_Pectobacterium_parmentieri_IFB5605 run_Pectobacterium_parmentieri_IFB5619 run_Pectobacterium_aquaticum_NAK_467 run_Pectobacterium_versatile_DSM30169 run_Pectobacterium_brasiliense_NAK_252 run_Pectobacterium_punjabense_IPO_3715SV1490b run_Pectobacterium_carotovorum_subsp._carotovorum_NCPPB312 run_Pectobacterium_brasiliense_IPO_4064NAK_242 run_Pectobacterium_parvum_NCPPB3395 run_Pectobacterium_parmentieri_NY1588A run_Pectobacterium_brasiliense_NAK_435 run_Pectobacterium_carotovorum_CFBP7347 run_Pectobacterium_atrosepticum_NCPPB549 run_Pectobacterium_brasiliense_A1 run_Pectobacterium_wasabiae_CFBP_3304_CFBP3304 run_Pectobacterium_brasiliense_IPO_3628 run_Pectobacterium_polaris_A668-S6-A17 run_Pectobacterium_polaris_PZ1 run_Pectobacterium_brasiliense_BD255 run_Pectobacterium_atrosepticum_21A run_Pectobacterium_parmentieri_IFB5626 run_Pectobacterium_brasiliense_IPO_3711NAK_381 run_Pectobacterium_parmentieri_IFB5597 run_Pectobacterium_aroidearum_LJ2 run_Pectobacterium_betavasculorum_NCPPB2795 run_Pectobacterium_parmentieri_CFIA1002_CFIA1002 run_Pectobacterium_brasiliense_CFIA1009 run_Pectobacterium_peruviense_UGC32 run_Pectobacterium_odoriferum_Q115 run_Pectobacterium_brasiliense_NAK_470 run_Pectobacterium_brasiliense_ICMP_19477_ICMP19477 run_Pectobacterium_brasiliense_SR7 run_Pectobacterium_carotovorum_subsp._carotovorum_Ecc15 run_Pectobacterium_punjabense_SS95 run_Pectobacterium_polaris_NIBIO1006 run_Pectobacterium_atrosepticum_36A run_Pectobacterium_versatile_S4.16.03.3I run_Pectobacterium_brasiliense_IPO_3708NAK_37899a run_Pectobacterium_brasiliense_IPO_4057NAK_249 run_Pectobacterium_quasiaquaticum_A398-S21-F17 run_Pectobacterium_parmentieri_IFB5408 run_Pectobacterium_actinidiae_ICMP19972 run_Pectobacterium_versatile_NAK_227 run_Pectobacterium_carotovorum_S4.16.03.1C run_Pectobacterium_carotovorum_BF45 run_Pectobacterium_carotovorum_XP-13 run_Pectobacterium_versatile_CFBP6698 run_Pectobacterium_brasiliense_NAK_466 run_Pectobacterium_carotovorum_S1.15.11.2D run_Pectobacterium_brasiliense_CFIA1033 run_Pectobacterium_brasiliense_IPO_4135NAK_383 run_Pectobacterium_versatile_S4.16.03.3K run_Pectobacterium_carotovorum_subsp._carotovorum_LMG2410 run_Pectobacterium_brasiliense_Y60 run_Pectobacterium_brasiliense_NAK_250 run_Pectobacterium_brasiliense_IPO_3540CFBP_6617ATCC_BAA-417IBSBF_1692 run_Pectobacterium_peruviense_IFB5229 run_Pectobacterium_odoriferum_CFBP8735 run_Pectobacterium_atrosepticum_NY1720A run_Pectobacterium_brasiliense_Y49 run_Pectobacterium_carotovorum_subsp._carotovorum_B2 run_Pectobacterium_carotovorum_NY1786A run_Pectobacterium_brasiliense_IPO_3710NAK_380 run_Pectobacterium_atrosepticum_Green1 run_Pectobacterium_peruviense_A97-S13-F16 run_Pectobacterium_brasiliense_LMG21372 run_Pectobacterium_brasiliense_CFBP8736 run_Pectobacterium_sp._CFBP8739_CFBP8739 run_Pectobacterium_odoriferum_Q32 run_Pectobacterium_polaris_S4.16.03.2B run_Pectobacterium_aquaticum_A212-S19-A16 run_Pectobacterium_brasiliense_IPO_4132NAK_239 run_Pectobacterium_quasiaquaticum_A113-S21-F16 run_Pectobacterium_versatile_A69-S13-O15 run_Pectobacterium_versatile_F135 run_Pectobacterium_versatile_KC03 run_Pectobacterium_carotovorum_subsp._carotovorum_BL-4 run_Pectobacterium_parmentieri_IFB5604 run_Pectobacterium_brasiliense_YCY46 run_Pectobacterium_brasiliense_IPO_4062NAK_237 run_Pectobacterium_aroidearum_CFBP8737 run_Pectobacterium_brasiliense_1692 run_Pectobacterium_versatile_SR12 run_Pectobacterium_parmentieri_IFB5441 run_Pectobacterium_versatile_RMIT1 run_Pectobacterium_parvum_s0421 run_Pectobacterium_brasiliense_Y29 run_Pectobacterium_quasiaquaticum_A477-S1-J17 run_Pectobacterium_parvum_Y1 run_Pectobacterium_atrosepticum_JG10-08 run_Pectobacterium_carotovorum_CFBP1402 run_Pectobacterium_actinidiae_ICMP19971 run_Pectobacterium_odoriferum_NCPPB3841 run_Pectobacterium_carotovorum_S1.16.01.3K run_Pectobacterium_carotovorum_WPP14 run_Pectobacterium_brasiliense_Y31 run_Pectobacterium_parmentieri_IPO_1955 run_Pectobacterium_polaris_A447-S21-J17 run_Pectobacterium_aroidearum_MY7 run_Pectobacterium_brasiliense_IPO_3709NAK_379112-1c run_Pectobacterium_versatile_CFBP6051 run_Pectobacterium_atrosepticum_SCRI1043_SCRI1043 run_Pectobacterium_versatile_A165-S18-M16 run_Pectobacterium_aquaticum_A127-S21-F16 run_Pectobacterium_brasiliense_CFBP5381 run_Pectobacterium_polaris_SS28 run_Pectobacterium_brasiliense_Y3 run_Pectobacterium_odoriferum_A367-S5-N16 run_Pectobacterium_parmentieri_IFB5427 run_Pectobacterium_carotovorum_subsp._carotovorum_Y16 run_Pectobacterium_versatile_PB69 run_Pectobacterium_quasiaquaticum_FL63-S17 run_Pectobacterium_versatile_F131 run_Pectobacterium_peruviense_IFB5232 run_Pectobacterium_polaris_WBC9 run_Pectobacterium_brasiliense_BC1 run_Pectobacterium_parmentieri_IFB5485 run_Pectobacterium_zantedeschiae_PC2 run_Pectobacterium_versatile_SR4 run_Pectobacterium_brasiliense_NAK_431 run_Pectobacterium_versatile_A546-S4-A17 run_Pectobacterium_brasiliense_F157 run_Pectobacterium_polaris_NAK_226 run_Pectobacterium_versatile_A75-S21-O15 run_Pectobacterium_odoriferum_Q166 run_Pectobacterium_brasiliense_CFBP3230 run_Pectobacterium_versatile_CFBP5669 run_Pectobacterium_brasiliense_NAK_247 run_Pectobacterium_versatile_3-2 run_Pectobacterium_atrosepticum_NCPPB3404 run_Pectobacterium_versatile_CFBP1118 run_Pectobacterium_polaris_WBC1 run_Pectobacterium_versatile_CFBP1552 run_Pectobacterium_carotovorum_subsp._carotovorum_ATCC39048 run_Pectobacterium_versatile_NAK_94PCC_163 run_Pectobacterium_brasiliense_Y52 run_Pectobacterium_polaris_A3 run_Pectobacterium_parmentieri_NY1584A run_Pectobacterium_odoriferum_Q40 run_Pectobacterium_odoriferum_JK2.1 run_Pectobacterium_odoriferum_S6 run_Pectobacterium_polaris_WBC6 run_Pectobacterium_versatile_SS96 run_Pectobacterium_parmentieri_NY1540A run_Pectobacterium_brasiliense_IPO_4058NAK_235 run_Pectobacterium_parmentieri_NY1533B run_Pectobacterium_versatile_IPO_0139NAK_93PCC_139 run_Pectobacterium_brasiliense_BL-2 run_Pectobacterium_brasiliense_NAK_432 run_Pectobacterium_brasiliense_IPO_4073NAK_248 run_Pectobacterium_carotovorum_subsp._carotovorum_B5 run_Pectobacterium_versatile_F018 run_Pectobacterium_odoriferum_Q47 run_Pectobacterium_betavasculorum_NCPPB2793 run_Pectobacterium_brasiliense_IPO_4066NAK_259 run_Pectobacterium_brasiliense_IPO_0821SCRI_133 run_Pectobacterium_carotovorum_BF20 run_Pectobacterium_polaris_QK413-1 run_Pectobacterium_parmentieri_IFB5432 run_Pectobacterium_brasiliense_S2 run_Pectobacterium_brasiliense_Y21 run_Pectobacterium_brasiliense_IPO_3650NAK_376 run_Pectobacterium_odoriferum_T4 run_Pectobacterium_brasiliense_BZA12 run_Pectobacterium_parmentieri_NY1585A run_Pectobacterium_aroidearum_MY11 run_Pectobacterium_atrosepticum_ICMP_1526_ICMP1526 run_Pectobacterium_carotovorum_NY1767A run_Pectobacterium_versatile_S4.16.03.3F run_Pectobacterium_aroidearum_KC20 run_Pectobacterium_aquaticum_A35-S23-M15 run_Pectobacterium_parmentieri_NY1532B run_Pectobacterium_carotovorum_subsp._carotovorum_PCCS1_PCCS1 run_Pectobacterium_brasiliense_IPO_4055NAK_152GBBC_1819 run_Pectobacterium_versatile_NY1753B run_Pectobacterium_brasiliense_CFIA1001 run_Pectobacterium_parmentieri_NY1722A run_Pectobacterium_brasiliense_SX309 run_Pectobacterium_carotovorum_CFBP6074 run_Pectobacterium_brasiliense_IPO_3649NAK_55 run_Pectobacterium_polaris_F109 run_Pectobacterium_brasiliense_IPO_4131NAK_399JGAR_16180717-4 run_Pectobacterium_versatile_Ecc71 run_Pectobacterium_atrosepticum_CFBP_6276_CFBP6276 run_Pectobacterium_brasiliense_NAK_434 run_Pectobacterium_carotovorum_subsp._carotovorum_JR1.1 run_Pectobacterium_carotovorum_subsp._carotovorum_Y57 run_Pectobacterium_brasiliense_TS20HJ1 run_Pectobacterium_brasiliense_IPO_3630 run_Pectobacterium_versatile_A095-S3-F16 run_Pectobacterium_peruviense_A350-S18-N16 run_Pectobacterium_atrosepticum_A597-S4-A17 run_Pectobacterium_aroidearum_MY19 run_Pectobacterium_parmentieri_WPP163_WPP163 run_Pectobacterium_atrosepticum_SS26 run_Pectobacterium_parmentieri_RNS08-42-1A run_Pectobacterium_versatile_A67-S18-O15 run_Pectobacterium_brasiliense_SR8 run_Pectobacterium_parmentieri_IFB5486 run_Pectobacterium_parmentieri_SCC3193 run_Pectobacterium_carotovorum_subsp._carotovorum_Y39 run_Pectobacterium_odoriferum_Q142 run_Pectobacterium_brasiliense_Y64 run_Pectobacterium_carotovorum_A077-S18-O15 run_Pectobacterium_versatile_CFBP5663 run_Pectobacterium_brasiliense_F126 run_Pectobacterium_brasiliense_F152 run_Pectobacterium_versatile_SR2 run_Pectobacterium_brasiliense_IPO_4056NAK_264GBBC_1756 run_Pectobacterium_brasiliense_SR10 run_Pectobacterium_parmentieri_NY1587A run_Pectobacterium_brasiliense_IPO_4068NAK_256 run_Pectobacterium_parmentieri_IFB5623 run_Pectobacterium_versatile_KC01 run_Pectobacterium_aroidearum_MY10 run_Pectobacterium_fontis_M022 run_Pectobacterium_parmentieri_SS90 run_Pectobacterium_odoriferum_NCPPB3839 run_Pectobacterium_brasiliense_NAK_385 run_Pectobacterium_brasiliense_NAK_430 run_Pectobacterium_odoriferum_BCS7 run_Pectobacterium_brasiliense_Y62 run_Pectobacterium_brasiliense_IPO_0590 run_Pectobacterium_aroidearum_MY18 run_Pectobacterium_brasiliense_NAK_243 run_Pectobacterium_versatile_SR1 run_Pectobacterium_zantedeschiae_2M run_Pectobacterium_parmentieri_PB20 run_Pectobacterium_brasiliense_IPO_3644 run_Pectobacterium_parmentieri_NY1712A run_Pectobacterium_brasiliense_NAK_433 run_Pectobacterium_parmentieri_HC run_Pectobacterium_versatile_NY1762B run_Pectobacterium_aquaticum_A105-S21-F16 run_Pectobacterium_parvum_s0416 run_Pectobacterium_versatile_SR3 run_Pectobacterium_brasiliense_NAK_384 run_Pectobacterium_actinidiae_KKH3 run_Pectobacterium_carotovorum_subsp._carotovorum_ICMP_5702_ICMP5702 run_Pectobacterium_polaris_ run_Pectobacterium_polonicum_DPMP315 run_Pectobacterium_punjabense_P9A19a run_Pectobacterium_parmentieri_WC19161 run_Pectobacterium_versatile_KC02 run_Pectobacterium_brasiliense_IPO_3643 run_Pectobacterium_carotovorum_2A run_Pectobacterium_brasiliense_IPO_3844NAK_382JGAR_12 run_Pectobacterium_versatile_NY1715C run_Pectobacterium_carotovorum_subsp._carotovorum_PCC21_PCC21 run_Pectobacterium_quasiaquaticum_FL60-S17 run_Pectobacterium_aroidearum_MY2 run_Pectobacterium_brasiliense_IPO_4134NAK_395 run_Pectobacterium_versatile_SCC1 run_Pectobacterium_carotovorum_subsp._carotovorum_67 run_Pectobacterium_brasiliense_NAK_241 run_Pectobacterium_brasiliense_IPO_3707NAK_37777a run_Pectobacterium_polaris_A641-S6-A17 run_Pectobacterium_versatile_14A run_Pectobacterium_carotovorum_A284-S2-N16 run_Pectobacterium_brasiliense_NAK_245 run_Pectobacterium_brasiliense_NAK_468 run_Pectobacterium_versatile_F16 run_Pectobacterium_odoriferum_Q3 run_Pectobacterium_brasiliense_CFBP7357 run_Pectobacterium_aroidearum_L6 run_Pectobacterium_quasiaquaticum_A535-S3-A17 run_Pectobacterium_brasiliense_A079-S20-O15 run_Pectobacterium_versatile_CFBP5378 run_Pectobacterium_versatile_NY1765A run_Pectobacterium_brasiliense_IPO_3843JGAR_11 run_Pectobacterium_brasiliense_PcbHPI01 run_Pectobacterium_odoriferum_T5 run_Pectobacterium_carotovorum_subsp._carotovorum_BP201601.1 run_Pectobacterium_versatile_NY1705A run_Pectobacterium_versatile_WS2152 run_Pectobacterium_polaris_IPO_4059NAK_253 run_Pectobacterium_brasiliense_SR5 run_Pectobacterium_aquaticum_A104-S21-F16 run_Pectobacterium_brasiliense_NAK_254 run_Pectobacterium_brasiliense_IPO_4065NAK_223 run_Pectobacterium_carotovorum_CFBP8734 run_Pectobacterium_atrosepticum_PB72 run_Pectobacterium_brasiliense_NAK_396 run_Pectobacterium_polaris_NIBIO1392 run_Pectobacterium_versatile_NY1754A run_Pectobacterium_wasabiae_NCPPB3701 run_Pectobacterium_carotovorum_S1-A16 run_Pectobacterium_zantedeschiae_9M run_Pectobacterium_brasiliense_SR11 run_Pectobacterium_parmentieri_QK-5 run_Pectobacterium_odoriferum_S6-2 run_Pectobacterium_atrosepticum_HAI2-SCRI1043 run_Pectobacterium_polaris_WBC11 run_Pectobacterium_brasiliense_B6 run_Pectobacterium_brasiliense_IPO_4067NAK_257 run_Pectobacterium_quasiaquaticum_A411-S4-F17 run_Pectobacterium_versatile_PB70 run_Pectobacterium_brasiliense_SR6 run_Pectobacterium_brasiliense_NAK_397 run_Pectobacterium_brasiliense_LMG21371 run_Pectobacterium_brasiliense_IPO_3649NAK_375 run_Pectobacterium_brasiliense_IPO_4071NAK_240 run_Pectobacterium_parmentieri_NY1548A run_Pectobacterium_punjabense_RNS08.28 run_Pectobacterium_wasabiae_NCPPB3702 run_Pectobacterium_carotovorum_subsp._carotovorum_WPP14_WPP14 75170at91347 316 77165at91347 317 67620at91347 317 73798at91347 318 4673at91347 316 30994at91347 317 12745at91347 314 36271at91347 312 87971at91347 318 38228at91347 316 37391at91347 317 40851at91347 318 56156at91347 318 61690at91347 316 48208at91347 318 2121at91347 318 56764at91347 316 80524at91347 316 90433at91347 316 46945at91347 318 46906at91347 317 46153at91347 317 30360at91347 317 75392at91347 316 19201at91347 317 85931at91347 317 38762at91347 318 49743at91347 318 53337at91347 318 70738at91347 317 81206at91347 316 54393at91347 318 74115at91347 315 75116at91347 318 78998at91347 317 21912at91347 316 19608at91347 317 82918at91347 317 5392at91347 317 95359at91347 317 88329at91347 318 41092at91347 316 35539at91347 318 38913at91347 318 51348at91347 317 74260at91347 316 52934at91347 312 52719at91347 317 92241at91347 317 87137at91347 317 65961at91347 318 44707at91347 318 84972at91347 318 11342at91347 317 64091at91347 317 6335at91347 318 61400at91347 316 68569at91347 317 29648at91347 313 56258at91347 317 37096at91347 315 58562at91347 317 54756at91347 317 86761at91347 317 74209at91347 317 34836at91347 318 27549at91347 316 92685at91347 317 54184at91347 318 92695at91347 317 65824at91347 315 23303at91347 317 2659at91347 318 75999at91347 318 7453at91347 316 95313at91347 316 70283at91347 317 16772at91347 316 36137at91347 317 60967at91347 316 93644at91347 317 57151at91347 317 50042at91347 318 87813at91347 318 84909at91347 316 31545at91347 317 25024at91347 318 48224at91347 316 90346at91347 317 67100at91347 318 30417at91347 317 78786at91347 317 59851at91347 317 77687at91347 318 77060at91347 317 19461at91347 318 27820at91347 314 56253at91347 316 73130at91347 317 35760at91347 317 23148at91347 316 81647at91347 318 19976at91347 318 79300at91347 316 13089at91347 318 17608at91347 316 19149at91347 318 62284at91347 318 44837at91347 315 9375at91347 318 8345at91347 318 92123at91347 318 87977at91347 317 96727at91347 317 82289at91347 318 67457at91347 305 70091at91347 317 72355at91347 316 73785at91347 315 81317at91347 318 80956at91347 317 73023at91347 317 51115at91347 317 30873at91347 318 77286at91347 317 64963at91347 318 47740at91347 316 22626at91347 318 77782at91347 314 80419at91347 318 63025at91347 316 73580at91347 318 76350at91347 318 2325at91347 312 17858at91347 316 29797at91347 316 17277at91347 318 79257at91347 316 26874at91347 318 3084at91347 315 72064at91347 317 87550at91347 317 49349at91347 316 6990at91347 317 19761at91347 317 72356at91347 317 74468at91347 318 45215at91347 317 52925at91347 316 49804at91347 317 29283at91347 316 73167at91347 318 74706at91347 318 64323at91347 318 77071at91347 318 82522at91347 317 87428at91347 316 84924at91347 315 58494at91347 316 9490at91347 316 1674at91347 317 17778at91347 318 93271at91347 318 64968at91347 315 83088at91347 314 32744at91347 318 20863at91347 317 80958at91347 316 64179at91347 314 32356at91347 318 94367at91347 316 90759at91347 318 74856at91347 316 18389at91347 296 43537at91347 316 71716at91347 317 17649at91347 316 35918at91347 318 71136at91347 317 87018at91347 317 5537at91347 318 15307at91347 317 95873at91347 318 80995at91347 317 80037at91347 317 13669at91347 318 5022at91347 317 9913at91347 317 81834at91347 317 76222at91347 318 65823at91347 317 52476at91347 318 52475at91347 317 78429at91347 316 40340at91347 317 67725at91347 317 49353at91347 317 71844at91347 318 6839at91347 317 22239at91347 317 43976at91347 316 57147at91347 316 19553at91347 318 95497at91347 314 33151at91347 317 31787at91347 314 48740at91347 315 57831at91347 317 26959at91347 317 11158at91347 317 82202at91347 317 70972at91347 317 16784at91347 315 30806at91347 317 312at91347 315 55368at91347 318 23866at91347 317 43106at91347 318 38133at91347 318 13051at91347 318 56819at91347 318 84085at91347 317 22268at91347 316 12374at91347 318 72088at91347 315 40939at91347 318 53308at91347 317 64441at91347 317 69788at91347 316 13589at91347 317 6639at91347 317 7906at91347 318 93345at91347 317 8822at91347 317 42318at91347 316 12072at91347 316 88640at91347 316 69316at91347 317 79018at91347 318 54310at91347 309 31386at91347 318 6493at91347 315 92226at91347 317 59634at91347 316 75919at91347 317 66051at91347 317 64486at91347 316 89704at91347 317 91012at91347 318 64712at91347 317 56018at91347 318 52324at91347 317 95703at91347 317 84552at91347 318 96177at91347 318 38408at91347 318 67418at91347 316 33442at91347 317 94802at91347 317 56917at91347 315 80129at91347 317 64145at91347 316 52332at91347 317 90110at91347 318 72076at91347 316 15629at91347 314 33224at91347 317 62655at91347 317 10523at91347 317 22118at91347 315 56250at91347 315 64954at91347 318 18548at91347 318 65588at91347 318 15960at91347 317 9070at91347 314 58439at91347 316 88237at91347 316 36292at91347 317 75689at91347 317 22092at91347 318 5072at91347 317 88866at91347 318 29509at91347 317 76438at91347 318 36667at91347 318 9079at91347 316 75969at91347 317 47034at91347 318 20637at91347 318 89583at91347 317 96165at91347 318 14646at91347 316 41111at91347 316 31738at91347 318 84827at91347 316 373at91347 315 73105at91347 316 18659at91347 315 62379at91347 317 31637at91347 317 93912at91347 315 69849at91347 317 93508at91347 317 8636at91347 317 63936at91347 317 86613at91347 317 50332at91347 314 91468at91347 317 21870at91347 318 55352at91347 318 51202at91347 317 88478at91347 317 79384at91347 317 63850at91347 316 94338at91347 316 47842at91347 316 60543at91347 318 81099at91347 317 62466at91347 318 49226at91347 316 60900at91347 318 76441at91347 318 13521at91347 317 5062at91347 317 74046at91347 318 18707at91347 317 90168at91347 315 10905at91347 318 49244at91347 316 33787at91347 317 46419at91347 316 28109at91347 318 68836at91347 316 23619at91347 318 83425at91347 317 13068at91347 318 50585at91347 316 84147at91347 317 61434at91347 317 48197at91347 317 56477at91347 317 75763at91347 316 12922at91347 317 65730at91347 318 95161at91347 314 27487at91347 317 31561at91347 318 90666at91347 317 61409at91347 316 8198at91347 317 58196at91347 316 85582at91347 316 3039at91347 317 64259at91347 318 56387at91347 318 43441at91347 317 76920at91347 317 36653at91347 315 39499at91347 318 64924at91347 317 2605at91347 316 43000at91347 317 52122at91347 316 78274at91347 318 35495at91347 318 25899at91347 318 35816at91347 316 12067at91347 317 87655at91347 317 24168at91347 316 16910at91347 316 66368at91347 317 44171at91347 316 78566at91347 317 49282at91347 318 80962at91347 315 93833at91347 315 42181at91347 316 64742at91347 317 854at91347 315 25383at91347 317 40895at91347 279 85777at91347 317 96867at91347 317 62648at91347 318 76135at91347 318 20568at91347 318 3734at91347 317 81712at91347 316 35630at91347 318 43538at91347 315 4459at91347 318 86762at91347 318 17229at91347 315 46977at91347 317 13022at91347 317 58708at91347 318 66179at91347 318 65110at91347 317 58706at91347 317 4210at91347 317 29906at91347 318 20969at91347 317 43407at91347 318 26452at91347 318 26964at91347 316 67463at91347 315 35016at91347 316 84938at91347 316 71239at91347 317 56003at91347 317 4867at91347 317 4269at91347 316 92978at91347 318 39012at91347 316 77379at91347 315 11564at91347 314 79395at91347 316 64955at91347 317 91936at91347 318 11276at91347 315 94841at91347 317 4411at91347 317 92896at91347 317 53222at91347 316 18497at91347 317 56763at91347 315 22142at91347 318 56094at91347 318 63042at91347 318 80271at91347 318 52566at91347 316 24492at91347 317 38001at91347 318 83959at91347 317 19548at91347 101 91994at91347 23 130 BUSCOs are single copy in all 318 species