2022-08-16 16:35:02 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/16/2022 16:35:02 ***** 2022-08-16 16:35:02 INFO: Configuring BUSCO with local environment 2022-08-16 16:35:02 INFO: Mode is genome 2022-08-16 16:35:02 INFO: Downloading information on latest versions of BUSCO data... 2022-08-16 16:35:14 INFO: Input file is /disk3/default/V2/admin/core/data/Dickeya1660667669/Dickeya_dadantii_NCPPB_898_NCPPB898.fna 2022-08-16 16:35:14 INFO: Downloading file 'https://busco-data.ezlab.org/v5/data/lineages/enterobacterales_odb10.2021-02-23.tar.gz' 2022-08-16 16:35:21 INFO: Decompressing file '/disk3/default/V2/admin/core/data/Dickeya1660667669/busco_downloads/lineages/enterobacterales_odb10.tar.gz' 2022-08-16 16:35:23 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-16 16:35:23 INFO: Running 1 job(s) on bbtools, starting at 08/16/2022 16:35:23 2022-08-16 16:35:24 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-16 16:35:24 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-16 16:35:24 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-16 16:35:24 INFO: Running 1 job(s) on prodigal, starting at 08/16/2022 16:35:24 2022-08-16 16:35:33 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-16 16:35:33 INFO: Genetic code 11 selected as optimal 2022-08-16 16:35:33 INFO: ***** Run HMMER on gene sequences ***** 2022-08-16 16:35:33 INFO: Running 440 job(s) on hmmsearch, starting at 08/16/2022 16:35:33 2022-08-16 16:35:38 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-16 16:35:43 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-16 16:35:46 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-16 16:35:49 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-16 16:35:53 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-16 16:35:55 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-16 16:35:58 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-16 16:36:00 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-16 16:36:02 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-16 16:36:04 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-16 16:36:04 INFO: Results: C:96.1%[S:93.6%,D:2.5%],F:0.5%,M:3.4%,n:440 2022-08-16 16:36:04 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:96.1%[S:93.6%,D:2.5%],F:0.5%,M:3.4%,n:440 | |423 Complete BUSCOs (C) | |412 Complete and single-copy BUSCOs (S) | |11 Complete and duplicated BUSCOs (D) | |2 Fragmented BUSCOs (F) | |15 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-16 16:36:04 INFO: BUSCO analysis done. Total running time: 50 seconds 2022-08-16 16:36:04 INFO: Results written in /disk3/default/V2/admin/core/data/Dickeya1660667669/outBusco/Dickeya_dadantii_NCPPB_898_NCPPB898 2022-08-16 16:36:04 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-16 16:36:04 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-16 16:36:05 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/16/2022 16:36:05 ***** 2022-08-16 16:36:05 INFO: Configuring BUSCO with local environment 2022-08-16 16:36:05 INFO: Mode is genome 2022-08-16 16:36:05 INFO: Downloading information on latest versions of BUSCO data... 2022-08-16 16:36:17 INFO: Input file is /disk3/default/V2/admin/core/data/Dickeya1660667669/Dickeya_solani_A623-S20-A17.fna 2022-08-16 16:36:17 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-16 16:36:17 INFO: Running 1 job(s) on bbtools, starting at 08/16/2022 16:36:17 2022-08-16 16:36:18 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-16 16:36:18 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-16 16:36:18 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-16 16:36:18 INFO: Running 1 job(s) on prodigal, starting at 08/16/2022 16:36:18 2022-08-16 16:36:28 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-16 16:36:29 INFO: Genetic code 11 selected as optimal 2022-08-16 16:36:29 INFO: ***** Run HMMER on gene sequences ***** 2022-08-16 16:36:29 INFO: Running 440 job(s) on hmmsearch, starting at 08/16/2022 16:36:29 2022-08-16 16:36:34 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-16 16:36:39 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-16 16:36:42 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-16 16:36:46 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-16 16:36:49 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-16 16:36:52 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-16 16:36:55 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-16 16:36:57 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-16 16:36:59 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-16 16:37:01 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-16 16:37:01 INFO: Results: C:99.3%[S:99.1%,D:0.2%],F:0.2%,M:0.5%,n:440 2022-08-16 16:37:01 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.3%[S:99.1%,D:0.2%],F:0.2%,M:0.5%,n:440 | |437 Complete BUSCOs (C) | |436 Complete and single-copy BUSCOs (S) | |1 Complete and duplicated BUSCOs (D) | |1 Fragmented BUSCOs (F) | |2 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-16 16:37:01 INFO: BUSCO analysis done. Total running time: 44 seconds 2022-08-16 16:37:01 INFO: Results written in /disk3/default/V2/admin/core/data/Dickeya1660667669/outBusco/Dickeya_solani_A623-S20-A17 2022-08-16 16:37:01 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-16 16:37:01 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-16 16:37:02 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/16/2022 16:37:02 ***** 2022-08-16 16:37:02 INFO: Configuring BUSCO with local environment 2022-08-16 16:37:02 INFO: Mode is genome 2022-08-16 16:37:02 INFO: Downloading information on latest versions of BUSCO data... 2022-08-16 16:37:14 INFO: Input file is /disk3/default/V2/admin/core/data/Dickeya1660667669/Dickeya_solani_Am3a.fna 2022-08-16 16:37:14 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-16 16:37:14 INFO: Running 1 job(s) on bbtools, starting at 08/16/2022 16:37:14 2022-08-16 16:37:15 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-16 16:37:15 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-16 16:37:15 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-16 16:37:15 INFO: Running 1 job(s) on prodigal, starting at 08/16/2022 16:37:15 2022-08-16 16:37:24 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-16 16:37:25 INFO: Genetic code 11 selected as optimal 2022-08-16 16:37:25 INFO: ***** Run HMMER on gene sequences ***** 2022-08-16 16:37:25 INFO: Running 440 job(s) on hmmsearch, starting at 08/16/2022 16:37:25 2022-08-16 16:37:30 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-16 16:37:34 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-16 16:37:38 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-16 16:37:41 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-16 16:37:44 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-16 16:37:47 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-16 16:37:50 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-16 16:37:52 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-16 16:37:54 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-16 16:37:56 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-16 16:37:56 INFO: Results: C:99.5%[S:99.3%,D:0.2%],F:0.2%,M:0.3%,n:440 2022-08-16 16:37:56 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.5%[S:99.3%,D:0.2%],F:0.2%,M:0.3%,n:440 | |438 Complete BUSCOs (C) | |437 Complete and single-copy BUSCOs (S) | |1 Complete and duplicated BUSCOs (D) | |1 Fragmented BUSCOs (F) | |1 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-16 16:37:56 INFO: BUSCO analysis done. Total running time: 42 seconds 2022-08-16 16:37:56 INFO: Results written in /disk3/default/V2/admin/core/data/Dickeya1660667669/outBusco/Dickeya_solani_Am3a 2022-08-16 16:37:56 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-16 16:37:56 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-16 16:37:56 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/16/2022 16:37:56 ***** 2022-08-16 16:37:56 INFO: Configuring BUSCO with local environment 2022-08-16 16:37:56 INFO: Mode is genome 2022-08-16 16:37:56 INFO: Downloading information on latest versions of BUSCO data... 2022-08-16 16:38:09 INFO: Input file is /disk3/default/V2/admin/core/data/Dickeya1660667669/Dickeya_solani_CH05026.fna 2022-08-16 16:38:09 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-16 16:38:09 INFO: Running 1 job(s) on bbtools, starting at 08/16/2022 16:38:09 2022-08-16 16:38:10 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-16 16:38:10 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-16 16:38:10 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-16 16:38:10 INFO: Running 1 job(s) on prodigal, starting at 08/16/2022 16:38:10 2022-08-16 16:38:19 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-16 16:38:19 INFO: Genetic code 11 selected as optimal 2022-08-16 16:38:19 INFO: ***** Run HMMER on gene sequences ***** 2022-08-16 16:38:19 INFO: Running 440 job(s) on hmmsearch, starting at 08/16/2022 16:38:19 2022-08-16 16:38:24 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-16 16:38:29 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-16 16:38:32 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-16 16:38:35 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-16 16:38:38 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-16 16:38:41 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-16 16:38:44 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-16 16:38:46 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-16 16:38:48 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-16 16:38:50 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-16 16:38:50 INFO: Results: C:99.5%[S:99.3%,D:0.2%],F:0.2%,M:0.3%,n:440 2022-08-16 16:38:50 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.5%[S:99.3%,D:0.2%],F:0.2%,M:0.3%,n:440 | |438 Complete BUSCOs (C) | |437 Complete and single-copy BUSCOs (S) | |1 Complete and duplicated BUSCOs (D) | |1 Fragmented BUSCOs (F) | |1 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-16 16:38:50 INFO: BUSCO analysis done. Total running time: 41 seconds 2022-08-16 16:38:50 INFO: Results written in /disk3/default/V2/admin/core/data/Dickeya1660667669/outBusco/Dickeya_solani_CH05026 2022-08-16 16:38:50 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-16 16:38:50 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-16 16:38:50 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/16/2022 16:38:50 ***** 2022-08-16 16:38:50 INFO: Configuring BUSCO with local environment 2022-08-16 16:38:50 INFO: Mode is genome 2022-08-16 16:38:50 INFO: Downloading information on latest versions of BUSCO data... 2022-08-16 16:39:03 INFO: Input file is /disk3/default/V2/admin/core/data/Dickeya1660667669/Dickeya_solani_CH07044.fna 2022-08-16 16:39:03 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-16 16:39:03 INFO: Running 1 job(s) on bbtools, starting at 08/16/2022 16:39:03 2022-08-16 16:39:04 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-16 16:39:04 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-16 16:39:04 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-16 16:39:04 INFO: Running 1 job(s) on prodigal, starting at 08/16/2022 16:39:04 2022-08-16 16:39:13 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-16 16:39:13 INFO: Genetic code 11 selected as optimal 2022-08-16 16:39:13 INFO: ***** Run HMMER on gene sequences ***** 2022-08-16 16:39:13 INFO: Running 440 job(s) on hmmsearch, starting at 08/16/2022 16:39:13 2022-08-16 16:39:19 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-16 16:39:23 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-16 16:39:26 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-16 16:39:30 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-16 16:39:33 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-16 16:39:36 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-16 16:39:39 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-16 16:39:40 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-16 16:39:43 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-16 16:39:44 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-16 16:39:44 INFO: Results: C:99.5%[S:99.3%,D:0.2%],F:0.2%,M:0.3%,n:440 2022-08-16 16:39:44 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.5%[S:99.3%,D:0.2%],F:0.2%,M:0.3%,n:440 | |438 Complete BUSCOs (C) | |437 Complete and single-copy BUSCOs (S) | |1 Complete and duplicated BUSCOs (D) | |1 Fragmented BUSCOs (F) | |1 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-16 16:39:44 INFO: BUSCO analysis done. Total running time: 42 seconds 2022-08-16 16:39:44 INFO: Results written in /disk3/default/V2/admin/core/data/Dickeya1660667669/outBusco/Dickeya_solani_CH07044 2022-08-16 16:39:44 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-16 16:39:44 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-16 16:39:45 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/16/2022 16:39:45 ***** 2022-08-16 16:39:45 INFO: Configuring BUSCO with local environment 2022-08-16 16:39:45 INFO: Mode is genome 2022-08-16 16:39:45 INFO: Downloading information on latest versions of BUSCO data... 2022-08-16 16:39:58 INFO: Input file is /disk3/default/V2/admin/core/data/Dickeya1660667669/Dickeya_solani_CH9635-1.fna 2022-08-16 16:39:58 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-16 16:39:58 INFO: Running 1 job(s) on bbtools, starting at 08/16/2022 16:39:58 2022-08-16 16:39:59 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-16 16:39:59 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-16 16:39:59 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-16 16:39:59 INFO: Running 1 job(s) on prodigal, starting at 08/16/2022 16:39:59 2022-08-16 16:40:07 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-16 16:40:07 INFO: Genetic code 11 selected as optimal 2022-08-16 16:40:07 INFO: ***** Run HMMER on gene sequences ***** 2022-08-16 16:40:07 INFO: Running 440 job(s) on hmmsearch, starting at 08/16/2022 16:40:07 2022-08-16 16:40:13 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-16 16:40:17 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-16 16:40:20 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-16 16:40:24 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-16 16:40:27 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-16 16:40:30 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-16 16:40:33 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-16 16:40:35 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-16 16:40:37 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-16 16:40:39 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-16 16:40:39 INFO: Results: C:99.5%[S:99.3%,D:0.2%],F:0.2%,M:0.3%,n:440 2022-08-16 16:40:39 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.5%[S:99.3%,D:0.2%],F:0.2%,M:0.3%,n:440 | |438 Complete BUSCOs (C) | |437 Complete and single-copy BUSCOs (S) | |1 Complete and duplicated BUSCOs (D) | |1 Fragmented BUSCOs (F) | |1 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-16 16:40:39 INFO: BUSCO analysis done. Total running time: 41 seconds 2022-08-16 16:40:39 INFO: Results written in /disk3/default/V2/admin/core/data/Dickeya1660667669/outBusco/Dickeya_solani_CH9635-1 2022-08-16 16:40:39 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-16 16:40:39 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-16 16:40:39 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/16/2022 16:40:39 ***** 2022-08-16 16:40:39 INFO: Configuring BUSCO with local environment 2022-08-16 16:40:39 INFO: Mode is genome 2022-08-16 16:40:39 INFO: Downloading information on latest versions of BUSCO data... 2022-08-16 16:40:52 INFO: Input file is /disk3/default/V2/admin/core/data/Dickeya1660667669/Dickeya_solani_CH9918-774.fna 2022-08-16 16:40:52 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-16 16:40:52 INFO: Running 1 job(s) on bbtools, starting at 08/16/2022 16:40:52 2022-08-16 16:40:53 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-16 16:40:53 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-16 16:40:53 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-16 16:40:53 INFO: Running 1 job(s) on prodigal, starting at 08/16/2022 16:40:53 2022-08-16 16:41:01 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-16 16:41:02 INFO: Genetic code 11 selected as optimal 2022-08-16 16:41:02 INFO: ***** Run HMMER on gene sequences ***** 2022-08-16 16:41:02 INFO: Running 440 job(s) on hmmsearch, starting at 08/16/2022 16:41:02 2022-08-16 16:41:07 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-16 16:41:11 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-16 16:41:14 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-16 16:41:18 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-16 16:41:21 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-16 16:41:24 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-16 16:41:27 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-16 16:41:29 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-16 16:41:31 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-16 16:41:32 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-16 16:41:32 INFO: Results: C:99.5%[S:99.3%,D:0.2%],F:0.2%,M:0.3%,n:440 2022-08-16 16:41:33 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.5%[S:99.3%,D:0.2%],F:0.2%,M:0.3%,n:440 | |438 Complete BUSCOs (C) | |437 Complete and single-copy BUSCOs (S) | |1 Complete and duplicated BUSCOs (D) | |1 Fragmented BUSCOs (F) | |1 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-16 16:41:33 INFO: BUSCO analysis done. Total running time: 41 seconds 2022-08-16 16:41:33 INFO: Results written in /disk3/default/V2/admin/core/data/Dickeya1660667669/outBusco/Dickeya_solani_CH9918-774 2022-08-16 16:41:33 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-16 16:41:33 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-16 16:41:33 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/16/2022 16:41:33 ***** 2022-08-16 16:41:33 INFO: Configuring BUSCO with local environment 2022-08-16 16:41:33 INFO: Mode is genome 2022-08-16 16:41:33 INFO: Downloading information on latest versions of BUSCO data... 2022-08-16 16:41:46 INFO: Input file is /disk3/default/V2/admin/core/data/Dickeya1660667669/Dickeya_solani_D12.fna 2022-08-16 16:41:46 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-16 16:41:46 INFO: Running 1 job(s) on bbtools, starting at 08/16/2022 16:41:46 2022-08-16 16:41:47 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-16 16:41:47 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-16 16:41:47 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-16 16:41:47 INFO: Running 1 job(s) on prodigal, starting at 08/16/2022 16:41:47 2022-08-16 16:41:56 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-16 16:41:56 INFO: Genetic code 11 selected as optimal 2022-08-16 16:41:56 INFO: ***** Run HMMER on gene sequences ***** 2022-08-16 16:41:56 INFO: Running 440 job(s) on hmmsearch, starting at 08/16/2022 16:41:56 2022-08-16 16:42:01 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-16 16:42:06 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-16 16:42:09 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-16 16:42:13 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-16 16:42:16 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-16 16:42:19 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-16 16:42:21 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-16 16:42:23 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-16 16:42:25 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-16 16:42:27 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-16 16:42:27 INFO: Results: C:99.5%[S:99.3%,D:0.2%],F:0.2%,M:0.3%,n:440 2022-08-16 16:42:27 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.5%[S:99.3%,D:0.2%],F:0.2%,M:0.3%,n:440 | |438 Complete BUSCOs (C) | |437 Complete and single-copy BUSCOs (S) | |1 Complete and duplicated BUSCOs (D) | |1 Fragmented BUSCOs (F) | |1 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-16 16:42:27 INFO: BUSCO analysis done. Total running time: 42 seconds 2022-08-16 16:42:27 INFO: Results written in /disk3/default/V2/admin/core/data/Dickeya1660667669/outBusco/Dickeya_solani_D12 2022-08-16 16:42:27 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-16 16:42:27 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-16 16:42:28 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/16/2022 16:42:28 ***** 2022-08-16 16:42:28 INFO: Configuring BUSCO with local environment 2022-08-16 16:42:28 INFO: Mode is genome 2022-08-16 16:42:28 INFO: Downloading information on latest versions of BUSCO data... 2022-08-16 16:42:41 INFO: Input file is /disk3/default/V2/admin/core/data/Dickeya1660667669/Dickeya_solani_Ds0432-1.fna 2022-08-16 16:42:41 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-16 16:42:41 INFO: Running 1 job(s) on bbtools, starting at 08/16/2022 16:42:41 2022-08-16 16:42:41 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-16 16:42:41 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-16 16:42:41 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-16 16:42:41 INFO: Running 1 job(s) on prodigal, starting at 08/16/2022 16:42:41 2022-08-16 16:42:50 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-16 16:42:50 INFO: Genetic code 11 selected as optimal 2022-08-16 16:42:50 INFO: ***** Run HMMER on gene sequences ***** 2022-08-16 16:42:50 INFO: Running 440 job(s) on hmmsearch, starting at 08/16/2022 16:42:50 2022-08-16 16:42:55 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-16 16:43:00 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-16 16:43:03 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-16 16:43:07 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-16 16:43:10 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-16 16:43:13 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-16 16:43:16 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-16 16:43:18 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-16 16:43:20 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-16 16:43:21 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-16 16:43:22 INFO: Results: C:99.5%[S:99.3%,D:0.2%],F:0.2%,M:0.3%,n:440 2022-08-16 16:43:22 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.5%[S:99.3%,D:0.2%],F:0.2%,M:0.3%,n:440 | |438 Complete BUSCOs (C) | |437 Complete and single-copy BUSCOs (S) | |1 Complete and duplicated BUSCOs (D) | |1 Fragmented BUSCOs (F) | |1 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-16 16:43:22 INFO: BUSCO analysis done. Total running time: 41 seconds 2022-08-16 16:43:22 INFO: Results written in /disk3/default/V2/admin/core/data/Dickeya1660667669/outBusco/Dickeya_solani_Ds0432-1 2022-08-16 16:43:22 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-16 16:43:22 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-16 16:43:22 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/16/2022 16:43:22 ***** 2022-08-16 16:43:22 INFO: Configuring BUSCO with local environment 2022-08-16 16:43:22 INFO: Mode is genome 2022-08-16 16:43:22 INFO: Downloading information on latest versions of BUSCO data... 2022-08-16 16:43:35 INFO: Input file is /disk3/default/V2/admin/core/data/Dickeya1660667669/Dickeya_solani_F012.fna 2022-08-16 16:43:35 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-16 16:43:35 INFO: Running 1 job(s) on bbtools, starting at 08/16/2022 16:43:35 2022-08-16 16:43:36 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-16 16:43:36 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-16 16:43:36 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-16 16:43:36 INFO: Running 1 job(s) on prodigal, starting at 08/16/2022 16:43:36 2022-08-16 16:43:45 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-16 16:43:45 INFO: Genetic code 11 selected as optimal 2022-08-16 16:43:45 INFO: ***** Run HMMER on gene sequences ***** 2022-08-16 16:43:45 INFO: Running 440 job(s) on hmmsearch, starting at 08/16/2022 16:43:45 2022-08-16 16:43:50 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-16 16:43:55 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-16 16:43:58 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-16 16:44:01 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-16 16:44:05 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-16 16:44:07 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-16 16:44:10 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-16 16:44:12 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-16 16:44:14 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-16 16:44:16 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-16 16:44:16 INFO: Results: C:99.5%[S:99.3%,D:0.2%],F:0.2%,M:0.3%,n:440 2022-08-16 16:44:16 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.5%[S:99.3%,D:0.2%],F:0.2%,M:0.3%,n:440 | |438 Complete BUSCOs (C) | |437 Complete and single-copy BUSCOs (S) | |1 Complete and duplicated BUSCOs (D) | |1 Fragmented BUSCOs (F) | |1 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-16 16:44:16 INFO: BUSCO analysis done. Total running time: 41 seconds 2022-08-16 16:44:16 INFO: Results written in /disk3/default/V2/admin/core/data/Dickeya1660667669/outBusco/Dickeya_solani_F012 2022-08-16 16:44:16 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-16 16:44:16 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-16 16:44:17 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/16/2022 16:44:17 ***** 2022-08-16 16:44:17 INFO: Configuring BUSCO with local environment 2022-08-16 16:44:17 INFO: Mode is genome 2022-08-16 16:44:17 INFO: Downloading information on latest versions of BUSCO data... 2022-08-16 16:44:29 INFO: Input file is /disk3/default/V2/admin/core/data/Dickeya1660667669/Dickeya_solani_GBBC2040.fna 2022-08-16 16:44:29 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-16 16:44:29 INFO: Running 1 job(s) on bbtools, starting at 08/16/2022 16:44:29 2022-08-16 16:44:30 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-16 16:44:30 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-16 16:44:30 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-16 16:44:30 INFO: Running 1 job(s) on prodigal, starting at 08/16/2022 16:44:30 2022-08-16 16:44:40 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-16 16:44:40 INFO: Genetic code 11 selected as optimal 2022-08-16 16:44:40 INFO: ***** Run HMMER on gene sequences ***** 2022-08-16 16:44:40 INFO: Running 440 job(s) on hmmsearch, starting at 08/16/2022 16:44:40 2022-08-16 16:44:46 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-16 16:44:50 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-16 16:44:53 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-16 16:44:57 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-16 16:45:00 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-16 16:45:03 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-16 16:45:06 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-16 16:45:07 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-16 16:45:10 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-16 16:45:11 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-16 16:45:11 INFO: Results: C:98.4%[S:98.2%,D:0.2%],F:0.9%,M:0.7%,n:440 2022-08-16 16:45:11 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:98.4%[S:98.2%,D:0.2%],F:0.9%,M:0.7%,n:440 | |433 Complete BUSCOs (C) | |432 Complete and single-copy BUSCOs (S) | |1 Complete and duplicated BUSCOs (D) | |4 Fragmented BUSCOs (F) | |3 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-16 16:45:11 INFO: BUSCO analysis done. Total running time: 42 seconds 2022-08-16 16:45:11 INFO: Results written in /disk3/default/V2/admin/core/data/Dickeya1660667669/outBusco/Dickeya_solani_GBBC2040 2022-08-16 16:45:11 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-16 16:45:11 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-16 16:45:12 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/16/2022 16:45:12 ***** 2022-08-16 16:45:12 INFO: Configuring BUSCO with local environment 2022-08-16 16:45:12 INFO: Mode is genome 2022-08-16 16:45:12 INFO: Downloading information on latest versions of BUSCO data... 2022-08-16 16:45:25 INFO: Input file is /disk3/default/V2/admin/core/data/Dickeya1660667669/Dickeya_solani_IFB0099.fna 2022-08-16 16:45:25 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-16 16:45:25 INFO: Running 1 job(s) on bbtools, starting at 08/16/2022 16:45:25 2022-08-16 16:45:26 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-16 16:45:26 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-16 16:45:26 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-16 16:45:26 INFO: Running 1 job(s) on prodigal, starting at 08/16/2022 16:45:26 2022-08-16 16:45:37 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-16 16:45:37 INFO: Genetic code 11 selected as optimal 2022-08-16 16:45:37 INFO: ***** Run HMMER on gene sequences ***** 2022-08-16 16:45:37 INFO: Running 440 job(s) on hmmsearch, starting at 08/16/2022 16:45:37 2022-08-16 16:45:42 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-16 16:45:46 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-16 16:45:50 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-16 16:45:53 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-16 16:45:56 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-16 16:45:59 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-16 16:46:02 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-16 16:46:04 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-16 16:46:06 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-16 16:46:08 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-16 16:46:08 INFO: Results: C:99.5%[S:99.3%,D:0.2%],F:0.2%,M:0.3%,n:440 2022-08-16 16:46:08 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.5%[S:99.3%,D:0.2%],F:0.2%,M:0.3%,n:440 | |438 Complete BUSCOs (C) | |437 Complete and single-copy BUSCOs (S) | |1 Complete and duplicated BUSCOs (D) | |1 Fragmented BUSCOs (F) | |1 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-16 16:46:08 INFO: BUSCO analysis done. Total running time: 43 seconds 2022-08-16 16:46:08 INFO: Results written in /disk3/default/V2/admin/core/data/Dickeya1660667669/outBusco/Dickeya_solani_IFB0099 2022-08-16 16:46:08 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-16 16:46:08 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-16 16:46:08 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/16/2022 16:46:08 ***** 2022-08-16 16:46:08 INFO: Configuring BUSCO with local environment 2022-08-16 16:46:08 INFO: Mode is genome 2022-08-16 16:46:08 INFO: Downloading information on latest versions of BUSCO data... 2022-08-16 16:46:21 INFO: Input file is /disk3/default/V2/admin/core/data/Dickeya1660667669/Dickeya_solani_IFB_0158.fna 2022-08-16 16:46:21 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-16 16:46:21 INFO: Running 1 job(s) on bbtools, starting at 08/16/2022 16:46:21 2022-08-16 16:46:22 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-16 16:46:22 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-16 16:46:22 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-16 16:46:22 INFO: Running 1 job(s) on prodigal, starting at 08/16/2022 16:46:22 2022-08-16 16:46:30 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-16 16:46:31 INFO: Genetic code 11 selected as optimal 2022-08-16 16:46:31 INFO: ***** Run HMMER on gene sequences ***** 2022-08-16 16:46:31 INFO: Running 440 job(s) on hmmsearch, starting at 08/16/2022 16:46:31 2022-08-16 16:46:36 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-16 16:46:40 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-16 16:46:44 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-16 16:46:47 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-16 16:46:50 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-16 16:46:53 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-16 16:46:56 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-16 16:46:58 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-16 16:47:00 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-16 16:47:01 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-16 16:47:02 INFO: Results: C:99.5%[S:99.3%,D:0.2%],F:0.2%,M:0.3%,n:440 2022-08-16 16:47:02 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.5%[S:99.3%,D:0.2%],F:0.2%,M:0.3%,n:440 | |438 Complete BUSCOs (C) | |437 Complete and single-copy BUSCOs (S) | |1 Complete and duplicated BUSCOs (D) | |1 Fragmented BUSCOs (F) | |1 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-16 16:47:02 INFO: BUSCO analysis done. Total running time: 41 seconds 2022-08-16 16:47:02 INFO: Results written in /disk3/default/V2/admin/core/data/Dickeya1660667669/outBusco/Dickeya_solani_IFB_0158 2022-08-16 16:47:02 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-16 16:47:02 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-16 16:47:02 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/16/2022 16:47:02 ***** 2022-08-16 16:47:02 INFO: Configuring BUSCO with local environment 2022-08-16 16:47:02 INFO: Mode is genome 2022-08-16 16:47:02 INFO: Downloading information on latest versions of BUSCO data... 2022-08-16 16:47:15 INFO: Input file is /disk3/default/V2/admin/core/data/Dickeya1660667669/Dickeya_solani_IFB0167.fna 2022-08-16 16:47:15 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-16 16:47:15 INFO: Running 1 job(s) on bbtools, starting at 08/16/2022 16:47:15 2022-08-16 16:47:16 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-16 16:47:16 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-16 16:47:16 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-16 16:47:16 INFO: Running 1 job(s) on prodigal, starting at 08/16/2022 16:47:16 2022-08-16 16:47:26 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-16 16:47:27 INFO: Genetic code 11 selected as optimal 2022-08-16 16:47:27 INFO: ***** Run HMMER on gene sequences ***** 2022-08-16 16:47:27 INFO: Running 440 job(s) on hmmsearch, starting at 08/16/2022 16:47:27 2022-08-16 16:47:32 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-16 16:47:37 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-16 16:47:40 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-16 16:47:43 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-16 16:47:47 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-16 16:47:50 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-16 16:47:52 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-16 16:47:54 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-16 16:47:56 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-16 16:47:58 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-16 16:47:58 INFO: Results: C:99.5%[S:99.3%,D:0.2%],F:0.2%,M:0.3%,n:440 2022-08-16 16:47:58 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.5%[S:99.3%,D:0.2%],F:0.2%,M:0.3%,n:440 | |438 Complete BUSCOs (C) | |437 Complete and single-copy BUSCOs (S) | |1 Complete and duplicated BUSCOs (D) | |1 Fragmented BUSCOs (F) | |1 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-16 16:47:58 INFO: BUSCO analysis done. Total running time: 44 seconds 2022-08-16 16:47:58 INFO: Results written in /disk3/default/V2/admin/core/data/Dickeya1660667669/outBusco/Dickeya_solani_IFB0167 2022-08-16 16:47:58 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-16 16:47:58 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-16 16:47:59 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/16/2022 16:47:59 ***** 2022-08-16 16:47:59 INFO: Configuring BUSCO with local environment 2022-08-16 16:47:59 INFO: Mode is genome 2022-08-16 16:47:59 INFO: Downloading information on latest versions of BUSCO data... 2022-08-16 16:48:12 INFO: Input file is /disk3/default/V2/admin/core/data/Dickeya1660667669/Dickeya_solani_IFB0212.fna 2022-08-16 16:48:12 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-16 16:48:12 INFO: Running 1 job(s) on bbtools, starting at 08/16/2022 16:48:12 2022-08-16 16:48:13 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-16 16:48:13 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-16 16:48:13 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-16 16:48:13 INFO: Running 1 job(s) on prodigal, starting at 08/16/2022 16:48:13 2022-08-16 16:48:22 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-16 16:48:23 INFO: Genetic code 11 selected as optimal 2022-08-16 16:48:23 INFO: ***** Run HMMER on gene sequences ***** 2022-08-16 16:48:23 INFO: Running 440 job(s) on hmmsearch, starting at 08/16/2022 16:48:23 2022-08-16 16:48:27 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-16 16:48:32 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-16 16:48:35 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-16 16:48:39 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-16 16:48:42 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-16 16:48:44 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-16 16:48:47 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-16 16:48:49 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-16 16:48:51 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-16 16:48:53 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-16 16:48:53 INFO: Results: C:99.5%[S:99.3%,D:0.2%],F:0.2%,M:0.3%,n:440 2022-08-16 16:48:53 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.5%[S:99.3%,D:0.2%],F:0.2%,M:0.3%,n:440 | |438 Complete BUSCOs (C) | |437 Complete and single-copy BUSCOs (S) | |1 Complete and duplicated BUSCOs (D) | |1 Fragmented BUSCOs (F) | |1 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-16 16:48:53 INFO: BUSCO analysis done. Total running time: 42 seconds 2022-08-16 16:48:53 INFO: Results written in /disk3/default/V2/admin/core/data/Dickeya1660667669/outBusco/Dickeya_solani_IFB0212 2022-08-16 16:48:53 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-16 16:48:53 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-16 16:48:54 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/16/2022 16:48:54 ***** 2022-08-16 16:48:54 INFO: Configuring BUSCO with local environment 2022-08-16 16:48:54 INFO: Mode is genome 2022-08-16 16:48:54 INFO: Downloading information on latest versions of BUSCO data... 2022-08-16 16:49:06 INFO: Input file is /disk3/default/V2/admin/core/data/Dickeya1660667669/Dickeya_solani_IFB_0221.fna 2022-08-16 16:49:07 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-16 16:49:07 INFO: Running 1 job(s) on bbtools, starting at 08/16/2022 16:49:07 2022-08-16 16:49:08 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-16 16:49:08 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-16 16:49:08 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-16 16:49:08 INFO: Running 1 job(s) on prodigal, starting at 08/16/2022 16:49:08 2022-08-16 16:49:16 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-16 16:49:16 INFO: Genetic code 11 selected as optimal 2022-08-16 16:49:16 INFO: ***** Run HMMER on gene sequences ***** 2022-08-16 16:49:16 INFO: Running 440 job(s) on hmmsearch, starting at 08/16/2022 16:49:16 2022-08-16 16:49:21 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-16 16:49:26 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-16 16:49:29 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-16 16:49:33 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-16 16:49:36 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-16 16:49:39 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-16 16:49:41 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-16 16:49:43 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-16 16:49:45 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-16 16:49:47 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-16 16:49:47 INFO: Results: C:99.5%[S:99.3%,D:0.2%],F:0.2%,M:0.3%,n:440 2022-08-16 16:49:47 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.5%[S:99.3%,D:0.2%],F:0.2%,M:0.3%,n:440 | |438 Complete BUSCOs (C) | |437 Complete and single-copy BUSCOs (S) | |1 Complete and duplicated BUSCOs (D) | |1 Fragmented BUSCOs (F) | |1 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-16 16:49:47 INFO: BUSCO analysis done. Total running time: 41 seconds 2022-08-16 16:49:47 INFO: Results written in /disk3/default/V2/admin/core/data/Dickeya1660667669/outBusco/Dickeya_solani_IFB_0221 2022-08-16 16:49:47 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-16 16:49:47 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-16 16:49:48 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/16/2022 16:49:48 ***** 2022-08-16 16:49:48 INFO: Configuring BUSCO with local environment 2022-08-16 16:49:48 INFO: Mode is genome 2022-08-16 16:49:48 INFO: Downloading information on latest versions of BUSCO data... 2022-08-16 16:50:01 INFO: Input file is /disk3/default/V2/admin/core/data/Dickeya1660667669/Dickeya_solani_IFB0223.fna 2022-08-16 16:50:01 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-16 16:50:01 INFO: Running 1 job(s) on bbtools, starting at 08/16/2022 16:50:01 2022-08-16 16:50:02 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-16 16:50:02 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-16 16:50:02 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-16 16:50:02 INFO: Running 1 job(s) on prodigal, starting at 08/16/2022 16:50:02 2022-08-16 16:50:12 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-16 16:50:12 INFO: Genetic code 11 selected as optimal 2022-08-16 16:50:12 INFO: ***** Run HMMER on gene sequences ***** 2022-08-16 16:50:12 INFO: Running 440 job(s) on hmmsearch, starting at 08/16/2022 16:50:12 2022-08-16 16:50:17 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-16 16:50:22 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-16 16:50:25 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-16 16:50:29 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-16 16:50:32 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-16 16:50:35 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-16 16:50:38 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-16 16:50:40 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-16 16:50:42 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-16 16:50:43 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-16 16:50:43 INFO: Results: C:99.3%[S:99.1%,D:0.2%],F:0.5%,M:0.2%,n:440 2022-08-16 16:50:44 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.3%[S:99.1%,D:0.2%],F:0.5%,M:0.2%,n:440 | |437 Complete BUSCOs (C) | |436 Complete and single-copy BUSCOs (S) | |1 Complete and duplicated BUSCOs (D) | |2 Fragmented BUSCOs (F) | |1 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-16 16:50:44 INFO: BUSCO analysis done. Total running time: 43 seconds 2022-08-16 16:50:44 INFO: Results written in /disk3/default/V2/admin/core/data/Dickeya1660667669/outBusco/Dickeya_solani_IFB0223 2022-08-16 16:50:44 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-16 16:50:44 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-16 16:50:44 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/16/2022 16:50:44 ***** 2022-08-16 16:50:44 INFO: Configuring BUSCO with local environment 2022-08-16 16:50:44 INFO: Mode is genome 2022-08-16 16:50:44 INFO: Downloading information on latest versions of BUSCO data... 2022-08-16 16:50:57 INFO: Input file is /disk3/default/V2/admin/core/data/Dickeya1660667669/Dickeya_solani_IFB0231.fna 2022-08-16 16:50:57 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-16 16:50:57 INFO: Running 1 job(s) on bbtools, starting at 08/16/2022 16:50:57 2022-08-16 16:50:58 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-16 16:50:58 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-16 16:50:58 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-16 16:50:58 INFO: Running 1 job(s) on prodigal, starting at 08/16/2022 16:50:58 2022-08-16 16:51:08 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-16 16:51:08 INFO: Genetic code 11 selected as optimal 2022-08-16 16:51:08 INFO: ***** Run HMMER on gene sequences ***** 2022-08-16 16:51:08 INFO: Running 440 job(s) on hmmsearch, starting at 08/16/2022 16:51:08 2022-08-16 16:51:13 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-16 16:51:18 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-16 16:51:21 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-16 16:51:25 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-16 16:51:28 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-16 16:51:31 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-16 16:51:34 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-16 16:51:36 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-16 16:51:38 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-16 16:51:39 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-16 16:51:39 INFO: Results: C:99.5%[S:99.3%,D:0.2%],F:0.2%,M:0.3%,n:440 2022-08-16 16:51:39 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.5%[S:99.3%,D:0.2%],F:0.2%,M:0.3%,n:440 | |438 Complete BUSCOs (C) | |437 Complete and single-copy BUSCOs (S) | |1 Complete and duplicated BUSCOs (D) | |1 Fragmented BUSCOs (F) | |1 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-16 16:51:39 INFO: BUSCO analysis done. Total running time: 43 seconds 2022-08-16 16:51:39 INFO: Results written in /disk3/default/V2/admin/core/data/Dickeya1660667669/outBusco/Dickeya_solani_IFB0231 2022-08-16 16:51:39 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-16 16:51:39 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-16 16:51:40 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/16/2022 16:51:40 ***** 2022-08-16 16:51:40 INFO: Configuring BUSCO with local environment 2022-08-16 16:51:40 INFO: Mode is genome 2022-08-16 16:51:40 INFO: Downloading information on latest versions of BUSCO data... 2022-08-16 16:51:53 INFO: Input file is /disk3/default/V2/admin/core/data/Dickeya1660667669/Dickeya_solani_IFB0311.fna 2022-08-16 16:51:53 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-16 16:51:53 INFO: Running 1 job(s) on bbtools, starting at 08/16/2022 16:51:53 2022-08-16 16:51:54 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-16 16:51:54 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-16 16:51:54 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-16 16:51:54 INFO: Running 1 job(s) on prodigal, starting at 08/16/2022 16:51:54 2022-08-16 16:52:02 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-16 16:52:02 INFO: Genetic code 11 selected as optimal 2022-08-16 16:52:02 INFO: ***** Run HMMER on gene sequences ***** 2022-08-16 16:52:02 INFO: Running 440 job(s) on hmmsearch, starting at 08/16/2022 16:52:02 2022-08-16 16:52:07 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-16 16:52:11 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-16 16:52:15 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-16 16:52:18 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-16 16:52:21 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-16 16:52:24 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-16 16:52:27 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-16 16:52:29 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-16 16:52:31 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-16 16:52:33 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-16 16:52:33 INFO: Results: C:99.5%[S:99.3%,D:0.2%],F:0.2%,M:0.3%,n:440 2022-08-16 16:52:33 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.5%[S:99.3%,D:0.2%],F:0.2%,M:0.3%,n:440 | |438 Complete BUSCOs (C) | |437 Complete and single-copy BUSCOs (S) | |1 Complete and duplicated BUSCOs (D) | |1 Fragmented BUSCOs (F) | |1 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-16 16:52:33 INFO: BUSCO analysis done. Total running time: 40 seconds 2022-08-16 16:52:33 INFO: Results written in /disk3/default/V2/admin/core/data/Dickeya1660667669/outBusco/Dickeya_solani_IFB0311 2022-08-16 16:52:33 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-16 16:52:33 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-16 16:52:34 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/16/2022 16:52:34 ***** 2022-08-16 16:52:34 INFO: Configuring BUSCO with local environment 2022-08-16 16:52:34 INFO: Mode is genome 2022-08-16 16:52:34 INFO: Downloading information on latest versions of BUSCO data... 2022-08-16 16:52:46 INFO: Input file is /disk3/default/V2/admin/core/data/Dickeya1660667669/Dickeya_solani_IFB0417.fna 2022-08-16 16:52:46 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-16 16:52:46 INFO: Running 1 job(s) on bbtools, starting at 08/16/2022 16:52:46 2022-08-16 16:52:47 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-16 16:52:47 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-16 16:52:47 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-16 16:52:47 INFO: Running 1 job(s) on prodigal, starting at 08/16/2022 16:52:47 2022-08-16 16:52:56 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-16 16:52:56 INFO: Genetic code 11 selected as optimal 2022-08-16 16:52:56 INFO: ***** Run HMMER on gene sequences ***** 2022-08-16 16:52:56 INFO: Running 440 job(s) on hmmsearch, starting at 08/16/2022 16:52:56 2022-08-16 16:53:01 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-16 16:53:05 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-16 16:53:09 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-16 16:53:12 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-16 16:53:16 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-16 16:53:18 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-16 16:53:21 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-16 16:53:23 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-16 16:53:25 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-16 16:53:27 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-16 16:53:27 INFO: Results: C:94.3%[S:94.1%,D:0.2%],F:4.1%,M:1.6%,n:440 2022-08-16 16:53:27 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:94.3%[S:94.1%,D:0.2%],F:4.1%,M:1.6%,n:440 | |415 Complete BUSCOs (C) | |414 Complete and single-copy BUSCOs (S) | |1 Complete and duplicated BUSCOs (D) | |18 Fragmented BUSCOs (F) | |7 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-16 16:53:27 INFO: BUSCO analysis done. Total running time: 41 seconds 2022-08-16 16:53:27 INFO: Results written in /disk3/default/V2/admin/core/data/Dickeya1660667669/outBusco/Dickeya_solani_IFB0417 2022-08-16 16:53:27 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-16 16:53:27 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-16 16:53:28 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/16/2022 16:53:28 ***** 2022-08-16 16:53:28 INFO: Configuring BUSCO with local environment 2022-08-16 16:53:28 INFO: Mode is genome 2022-08-16 16:53:28 INFO: Downloading information on latest versions of BUSCO data... 2022-08-16 16:53:40 INFO: Input file is /disk3/default/V2/admin/core/data/Dickeya1660667669/Dickeya_solani_IFB0421.fna 2022-08-16 16:53:41 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-16 16:53:41 INFO: Running 1 job(s) on bbtools, starting at 08/16/2022 16:53:41 2022-08-16 16:53:41 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-16 16:53:41 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-16 16:53:41 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-16 16:53:41 INFO: Running 1 job(s) on prodigal, starting at 08/16/2022 16:53:41 2022-08-16 16:53:51 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-16 16:53:51 INFO: Genetic code 11 selected as optimal 2022-08-16 16:53:51 INFO: ***** Run HMMER on gene sequences ***** 2022-08-16 16:53:51 INFO: Running 440 job(s) on hmmsearch, starting at 08/16/2022 16:53:51 2022-08-16 16:53:56 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-16 16:54:00 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-16 16:54:04 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-16 16:54:07 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-16 16:54:11 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-16 16:54:14 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-16 16:54:16 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-16 16:54:18 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-16 16:54:20 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-16 16:54:22 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-16 16:54:22 INFO: Results: C:99.1%[S:98.6%,D:0.5%],F:0.7%,M:0.2%,n:440 2022-08-16 16:54:22 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.1%[S:98.6%,D:0.5%],F:0.7%,M:0.2%,n:440 | |436 Complete BUSCOs (C) | |434 Complete and single-copy BUSCOs (S) | |2 Complete and duplicated BUSCOs (D) | |3 Fragmented BUSCOs (F) | |1 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-16 16:54:22 INFO: BUSCO analysis done. Total running time: 42 seconds 2022-08-16 16:54:22 INFO: Results written in /disk3/default/V2/admin/core/data/Dickeya1660667669/outBusco/Dickeya_solani_IFB0421 2022-08-16 16:54:22 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-16 16:54:22 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-16 16:54:23 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/16/2022 16:54:23 ***** 2022-08-16 16:54:23 INFO: Configuring BUSCO with local environment 2022-08-16 16:54:23 INFO: Mode is genome 2022-08-16 16:54:23 INFO: Downloading information on latest versions of BUSCO data... 2022-08-16 16:54:35 INFO: Input file is /disk3/default/V2/admin/core/data/Dickeya1660667669/Dickeya_solani_IFB0487.fna 2022-08-16 16:54:36 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-16 16:54:36 INFO: Running 1 job(s) on bbtools, starting at 08/16/2022 16:54:36 2022-08-16 16:54:36 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-16 16:54:36 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-16 16:54:36 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-16 16:54:36 INFO: Running 1 job(s) on prodigal, starting at 08/16/2022 16:54:36 2022-08-16 16:54:45 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-16 16:54:45 INFO: Genetic code 11 selected as optimal 2022-08-16 16:54:45 INFO: ***** Run HMMER on gene sequences ***** 2022-08-16 16:54:45 INFO: Running 440 job(s) on hmmsearch, starting at 08/16/2022 16:54:45 2022-08-16 16:54:50 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-16 16:54:55 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-16 16:54:58 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-16 16:55:01 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-16 16:55:05 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-16 16:55:07 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-16 16:55:10 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-16 16:55:12 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-16 16:55:14 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-16 16:55:16 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-16 16:55:16 INFO: Results: C:94.1%[S:93.9%,D:0.2%],F:4.3%,M:1.6%,n:440 2022-08-16 16:55:16 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:94.1%[S:93.9%,D:0.2%],F:4.3%,M:1.6%,n:440 | |414 Complete BUSCOs (C) | |413 Complete and single-copy BUSCOs (S) | |1 Complete and duplicated BUSCOs (D) | |19 Fragmented BUSCOs (F) | |7 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-16 16:55:16 INFO: BUSCO analysis done. Total running time: 41 seconds 2022-08-16 16:55:16 INFO: Results written in /disk3/default/V2/admin/core/data/Dickeya1660667669/outBusco/Dickeya_solani_IFB0487 2022-08-16 16:55:16 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-16 16:55:16 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-16 16:55:17 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/16/2022 16:55:17 ***** 2022-08-16 16:55:17 INFO: Configuring BUSCO with local environment 2022-08-16 16:55:17 INFO: Mode is genome 2022-08-16 16:55:17 INFO: Downloading information on latest versions of BUSCO data... 2022-08-16 16:55:29 INFO: Input file is /disk3/default/V2/admin/core/data/Dickeya1660667669/Dickeya_solani_IFB0695.fna 2022-08-16 16:55:30 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-16 16:55:30 INFO: Running 1 job(s) on bbtools, starting at 08/16/2022 16:55:30 2022-08-16 16:55:30 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-16 16:55:31 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-16 16:55:31 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-16 16:55:31 INFO: Running 1 job(s) on prodigal, starting at 08/16/2022 16:55:31 2022-08-16 16:55:39 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-16 16:55:40 INFO: Genetic code 11 selected as optimal 2022-08-16 16:55:40 INFO: ***** Run HMMER on gene sequences ***** 2022-08-16 16:55:40 INFO: Running 440 job(s) on hmmsearch, starting at 08/16/2022 16:55:40 2022-08-16 16:55:45 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-16 16:55:49 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-16 16:55:52 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-16 16:55:56 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-16 16:55:59 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-16 16:56:02 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-16 16:56:05 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-16 16:56:06 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-16 16:56:09 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-16 16:56:10 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-16 16:56:10 INFO: Results: C:98.7%[S:98.0%,D:0.7%],F:0.9%,M:0.4%,n:440 2022-08-16 16:56:10 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:98.7%[S:98.0%,D:0.7%],F:0.9%,M:0.4%,n:440 | |434 Complete BUSCOs (C) | |431 Complete and single-copy BUSCOs (S) | |3 Complete and duplicated BUSCOs (D) | |4 Fragmented BUSCOs (F) | |2 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-16 16:56:10 INFO: BUSCO analysis done. Total running time: 41 seconds 2022-08-16 16:56:10 INFO: Results written in /disk3/default/V2/admin/core/data/Dickeya1660667669/outBusco/Dickeya_solani_IFB0695 2022-08-16 16:56:10 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-16 16:56:10 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-16 16:56:11 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/16/2022 16:56:11 ***** 2022-08-16 16:56:11 INFO: Configuring BUSCO with local environment 2022-08-16 16:56:11 INFO: Mode is genome 2022-08-16 16:56:11 INFO: Downloading information on latest versions of BUSCO data... 2022-08-16 16:56:24 INFO: Input file is /disk3/default/V2/admin/core/data/Dickeya1660667669/Dickeya_solani_IPO2019.fna 2022-08-16 16:56:24 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-16 16:56:24 INFO: Running 1 job(s) on bbtools, starting at 08/16/2022 16:56:24 2022-08-16 16:56:25 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-16 16:56:25 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-16 16:56:25 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-16 16:56:25 INFO: Running 1 job(s) on prodigal, starting at 08/16/2022 16:56:25 2022-08-16 16:56:35 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-16 16:56:35 INFO: Genetic code 11 selected as optimal 2022-08-16 16:56:35 INFO: ***** Run HMMER on gene sequences ***** 2022-08-16 16:56:35 INFO: Running 440 job(s) on hmmsearch, starting at 08/16/2022 16:56:35 2022-08-16 16:56:40 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-16 16:56:45 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-16 16:56:49 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-16 16:56:52 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-16 16:56:56 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-16 16:56:58 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-16 16:57:01 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-16 16:57:03 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-16 16:57:05 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-16 16:57:07 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-16 16:57:07 INFO: Results: C:99.5%[S:99.3%,D:0.2%],F:0.2%,M:0.3%,n:440 2022-08-16 16:57:07 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.5%[S:99.3%,D:0.2%],F:0.2%,M:0.3%,n:440 | |438 Complete BUSCOs (C) | |437 Complete and single-copy BUSCOs (S) | |1 Complete and duplicated BUSCOs (D) | |1 Fragmented BUSCOs (F) | |1 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-16 16:57:07 INFO: BUSCO analysis done. Total running time: 43 seconds 2022-08-16 16:57:07 INFO: Results written in /disk3/default/V2/admin/core/data/Dickeya1660667669/outBusco/Dickeya_solani_IPO2019 2022-08-16 16:57:07 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-16 16:57:07 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-16 16:57:08 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/16/2022 16:57:08 ***** 2022-08-16 16:57:08 INFO: Configuring BUSCO with local environment 2022-08-16 16:57:08 INFO: Mode is genome 2022-08-16 16:57:08 INFO: Downloading information on latest versions of BUSCO data... 2022-08-16 16:57:20 INFO: Input file is /disk3/default/V2/admin/core/data/Dickeya1660667669/Dickeya_solani_IPO2222.fna 2022-08-16 16:57:20 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-16 16:57:20 INFO: Running 1 job(s) on bbtools, starting at 08/16/2022 16:57:20 2022-08-16 16:57:21 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-16 16:57:21 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-16 16:57:21 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-16 16:57:21 INFO: Running 1 job(s) on prodigal, starting at 08/16/2022 16:57:21 2022-08-16 16:57:31 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-16 16:57:31 INFO: Genetic code 11 selected as optimal 2022-08-16 16:57:31 INFO: ***** Run HMMER on gene sequences ***** 2022-08-16 16:57:31 INFO: Running 440 job(s) on hmmsearch, starting at 08/16/2022 16:57:31 2022-08-16 16:57:36 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-16 16:57:40 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-16 16:57:44 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-16 16:57:47 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-16 16:57:50 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-16 16:57:53 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-16 16:57:55 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-16 16:57:57 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-16 16:57:59 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-16 16:58:01 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-16 16:58:01 INFO: Results: C:99.5%[S:99.3%,D:0.2%],F:0.2%,M:0.3%,n:440 2022-08-16 16:58:01 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.5%[S:99.3%,D:0.2%],F:0.2%,M:0.3%,n:440 | |438 Complete BUSCOs (C) | |437 Complete and single-copy BUSCOs (S) | |1 Complete and duplicated BUSCOs (D) | |1 Fragmented BUSCOs (F) | |1 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-16 16:58:01 INFO: BUSCO analysis done. Total running time: 41 seconds 2022-08-16 16:58:01 INFO: Results written in /disk3/default/V2/admin/core/data/Dickeya1660667669/outBusco/Dickeya_solani_IPO2222 2022-08-16 16:58:01 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-16 16:58:01 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-16 16:58:02 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/16/2022 16:58:02 ***** 2022-08-16 16:58:02 INFO: Configuring BUSCO with local environment 2022-08-16 16:58:02 INFO: Mode is genome 2022-08-16 16:58:02 INFO: Downloading information on latest versions of BUSCO data... 2022-08-16 16:58:15 INFO: Input file is /disk3/default/V2/admin/core/data/Dickeya1660667669/Dickeya_solani_M21a.fna 2022-08-16 16:58:15 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-16 16:58:15 INFO: Running 1 job(s) on bbtools, starting at 08/16/2022 16:58:15 2022-08-16 16:58:16 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-16 16:58:16 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-16 16:58:16 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-16 16:58:16 INFO: Running 1 job(s) on prodigal, starting at 08/16/2022 16:58:16 2022-08-16 16:58:24 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-16 16:58:24 INFO: Genetic code 11 selected as optimal 2022-08-16 16:58:24 INFO: ***** Run HMMER on gene sequences ***** 2022-08-16 16:58:24 INFO: Running 440 job(s) on hmmsearch, starting at 08/16/2022 16:58:24 2022-08-16 16:58:30 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-16 16:58:34 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-16 16:58:38 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-16 16:58:41 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-16 16:58:44 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-16 16:58:47 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-16 16:58:50 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-16 16:58:52 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-16 16:58:54 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-16 16:58:56 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-16 16:58:56 INFO: Results: C:99.5%[S:99.3%,D:0.2%],F:0.2%,M:0.3%,n:440 2022-08-16 16:58:56 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.5%[S:99.3%,D:0.2%],F:0.2%,M:0.3%,n:440 | |438 Complete BUSCOs (C) | |437 Complete and single-copy BUSCOs (S) | |1 Complete and duplicated BUSCOs (D) | |1 Fragmented BUSCOs (F) | |1 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-16 16:58:56 INFO: BUSCO analysis done. Total running time: 41 seconds 2022-08-16 16:58:56 INFO: Results written in /disk3/default/V2/admin/core/data/Dickeya1660667669/outBusco/Dickeya_solani_M21a 2022-08-16 16:58:56 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-16 16:58:56 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-16 16:58:56 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/16/2022 16:58:56 ***** 2022-08-16 16:58:56 INFO: Configuring BUSCO with local environment 2022-08-16 16:58:56 INFO: Mode is genome 2022-08-16 16:58:56 INFO: Downloading information on latest versions of BUSCO data... 2022-08-16 16:59:09 INFO: Input file is /disk3/default/V2/admin/core/data/Dickeya1660667669/Dickeya_solani_MIE35.fna 2022-08-16 16:59:09 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-16 16:59:09 INFO: Running 1 job(s) on bbtools, starting at 08/16/2022 16:59:09 2022-08-16 16:59:10 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-16 16:59:10 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-16 16:59:10 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-16 16:59:10 INFO: Running 1 job(s) on prodigal, starting at 08/16/2022 16:59:10 2022-08-16 16:59:19 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-16 16:59:19 INFO: Genetic code 11 selected as optimal 2022-08-16 16:59:19 INFO: ***** Run HMMER on gene sequences ***** 2022-08-16 16:59:19 INFO: Running 440 job(s) on hmmsearch, starting at 08/16/2022 16:59:19 2022-08-16 16:59:24 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-16 16:59:29 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-16 16:59:32 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-16 16:59:36 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-16 16:59:39 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-16 16:59:41 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-16 16:59:44 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-16 16:59:46 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-16 16:59:48 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-16 16:59:50 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-16 16:59:50 INFO: Results: C:99.5%[S:99.3%,D:0.2%],F:0.2%,M:0.3%,n:440 2022-08-16 16:59:50 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.5%[S:99.3%,D:0.2%],F:0.2%,M:0.3%,n:440 | |438 Complete BUSCOs (C) | |437 Complete and single-copy BUSCOs (S) | |1 Complete and duplicated BUSCOs (D) | |1 Fragmented BUSCOs (F) | |1 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-16 16:59:50 INFO: BUSCO analysis done. Total running time: 41 seconds 2022-08-16 16:59:50 INFO: Results written in /disk3/default/V2/admin/core/data/Dickeya1660667669/outBusco/Dickeya_solani_MIE35 2022-08-16 16:59:50 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-16 16:59:50 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-16 16:59:51 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/16/2022 16:59:51 ***** 2022-08-16 16:59:51 INFO: Configuring BUSCO with local environment 2022-08-16 16:59:51 INFO: Mode is genome 2022-08-16 16:59:51 INFO: Downloading information on latest versions of BUSCO data... 2022-08-16 17:00:03 INFO: Input file is /disk3/default/V2/admin/core/data/Dickeya1660667669/Dickeya_solani_MK10.fna 2022-08-16 17:00:03 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-16 17:00:03 INFO: Running 1 job(s) on bbtools, starting at 08/16/2022 17:00:03 2022-08-16 17:00:04 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-16 17:00:04 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-16 17:00:04 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-16 17:00:04 INFO: Running 1 job(s) on prodigal, starting at 08/16/2022 17:00:04 2022-08-16 17:00:14 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-16 17:00:14 INFO: Genetic code 11 selected as optimal 2022-08-16 17:00:14 INFO: ***** Run HMMER on gene sequences ***** 2022-08-16 17:00:14 INFO: Running 440 job(s) on hmmsearch, starting at 08/16/2022 17:00:14 2022-08-16 17:00:19 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-16 17:00:24 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-16 17:00:27 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-16 17:00:31 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-16 17:00:34 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-16 17:00:37 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-16 17:00:40 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-16 17:00:42 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-16 17:00:44 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-16 17:00:46 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-16 17:00:46 INFO: Results: C:98.4%[S:98.2%,D:0.2%],F:1.1%,M:0.5%,n:440 2022-08-16 17:00:46 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:98.4%[S:98.2%,D:0.2%],F:1.1%,M:0.5%,n:440 | |433 Complete BUSCOs (C) | |432 Complete and single-copy BUSCOs (S) | |1 Complete and duplicated BUSCOs (D) | |5 Fragmented BUSCOs (F) | |2 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-16 17:00:46 INFO: BUSCO analysis done. Total running time: 43 seconds 2022-08-16 17:00:46 INFO: Results written in /disk3/default/V2/admin/core/data/Dickeya1660667669/outBusco/Dickeya_solani_MK10 2022-08-16 17:00:46 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-16 17:00:46 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-16 17:00:46 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/16/2022 17:00:46 ***** 2022-08-16 17:00:46 INFO: Configuring BUSCO with local environment 2022-08-16 17:00:46 INFO: Mode is genome 2022-08-16 17:00:46 INFO: Downloading information on latest versions of BUSCO data... 2022-08-16 17:00:59 INFO: Input file is /disk3/default/V2/admin/core/data/Dickeya1660667669/Dickeya_solani_MK16.fna 2022-08-16 17:00:59 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-16 17:00:59 INFO: Running 1 job(s) on bbtools, starting at 08/16/2022 17:00:59 2022-08-16 17:01:00 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-16 17:01:00 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-16 17:01:00 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-16 17:01:00 INFO: Running 1 job(s) on prodigal, starting at 08/16/2022 17:01:00 2022-08-16 17:01:10 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-16 17:01:10 INFO: Genetic code 11 selected as optimal 2022-08-16 17:01:10 INFO: ***** Run HMMER on gene sequences ***** 2022-08-16 17:01:10 INFO: Running 440 job(s) on hmmsearch, starting at 08/16/2022 17:01:10 2022-08-16 17:01:15 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-16 17:01:20 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-16 17:01:23 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-16 17:01:27 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-16 17:01:30 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-16 17:01:33 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-16 17:01:35 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-16 17:01:37 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-16 17:01:39 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-16 17:01:41 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-16 17:01:41 INFO: Results: C:99.3%[S:99.1%,D:0.2%],F:0.5%,M:0.2%,n:440 2022-08-16 17:01:41 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.3%[S:99.1%,D:0.2%],F:0.5%,M:0.2%,n:440 | |437 Complete BUSCOs (C) | |436 Complete and single-copy BUSCOs (S) | |1 Complete and duplicated BUSCOs (D) | |2 Fragmented BUSCOs (F) | |1 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-16 17:01:41 INFO: BUSCO analysis done. Total running time: 43 seconds 2022-08-16 17:01:41 INFO: Results written in /disk3/default/V2/admin/core/data/Dickeya1660667669/outBusco/Dickeya_solani_MK16 2022-08-16 17:01:41 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-16 17:01:41 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-16 17:01:42 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/16/2022 17:01:42 ***** 2022-08-16 17:01:42 INFO: Configuring BUSCO with local environment 2022-08-16 17:01:42 INFO: Mode is genome 2022-08-16 17:01:42 INFO: Downloading information on latest versions of BUSCO data... 2022-08-16 17:01:55 INFO: Input file is /disk3/default/V2/admin/core/data/Dickeya1660667669/Dickeya_solani_PPO9019.fna 2022-08-16 17:01:55 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-16 17:01:55 INFO: Running 1 job(s) on bbtools, starting at 08/16/2022 17:01:55 2022-08-16 17:01:56 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-16 17:01:56 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-16 17:01:56 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-16 17:01:56 INFO: Running 1 job(s) on prodigal, starting at 08/16/2022 17:01:56 2022-08-16 17:02:04 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-16 17:02:04 INFO: Genetic code 11 selected as optimal 2022-08-16 17:02:04 INFO: ***** Run HMMER on gene sequences ***** 2022-08-16 17:02:04 INFO: Running 440 job(s) on hmmsearch, starting at 08/16/2022 17:02:04 2022-08-16 17:02:09 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-16 17:02:13 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-16 17:02:17 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-16 17:02:20 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-16 17:02:24 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-16 17:02:26 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-16 17:02:29 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-16 17:02:31 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-16 17:02:33 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-16 17:02:35 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-16 17:02:35 INFO: Results: C:99.5%[S:99.3%,D:0.2%],F:0.2%,M:0.3%,n:440 2022-08-16 17:02:35 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.5%[S:99.3%,D:0.2%],F:0.2%,M:0.3%,n:440 | |438 Complete BUSCOs (C) | |437 Complete and single-copy BUSCOs (S) | |1 Complete and duplicated BUSCOs (D) | |1 Fragmented BUSCOs (F) | |1 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-16 17:02:35 INFO: BUSCO analysis done. Total running time: 41 seconds 2022-08-16 17:02:35 INFO: Results written in /disk3/default/V2/admin/core/data/Dickeya1660667669/outBusco/Dickeya_solani_PPO9019 2022-08-16 17:02:35 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-16 17:02:35 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-16 17:02:36 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/16/2022 17:02:36 ***** 2022-08-16 17:02:36 INFO: Configuring BUSCO with local environment 2022-08-16 17:02:36 INFO: Mode is genome 2022-08-16 17:02:36 INFO: Downloading information on latest versions of BUSCO data... 2022-08-16 17:02:48 INFO: Input file is /disk3/default/V2/admin/core/data/Dickeya1660667669/Dickeya_solani_PPO9134.fna 2022-08-16 17:02:48 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-16 17:02:48 INFO: Running 1 job(s) on bbtools, starting at 08/16/2022 17:02:48 2022-08-16 17:02:49 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-16 17:02:49 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-16 17:02:49 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-16 17:02:49 INFO: Running 1 job(s) on prodigal, starting at 08/16/2022 17:02:49 2022-08-16 17:02:58 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-16 17:02:58 INFO: Genetic code 11 selected as optimal 2022-08-16 17:02:58 INFO: ***** Run HMMER on gene sequences ***** 2022-08-16 17:02:58 INFO: Running 440 job(s) on hmmsearch, starting at 08/16/2022 17:02:58 2022-08-16 17:03:03 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-16 17:03:07 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-16 17:03:11 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-16 17:03:14 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-16 17:03:17 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-16 17:03:20 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-16 17:03:23 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-16 17:03:25 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-16 17:03:27 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-16 17:03:29 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-16 17:03:29 INFO: Results: C:99.5%[S:99.3%,D:0.2%],F:0.2%,M:0.3%,n:440 2022-08-16 17:03:29 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.5%[S:99.3%,D:0.2%],F:0.2%,M:0.3%,n:440 | |438 Complete BUSCOs (C) | |437 Complete and single-copy BUSCOs (S) | |1 Complete and duplicated BUSCOs (D) | |1 Fragmented BUSCOs (F) | |1 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-16 17:03:29 INFO: BUSCO analysis done. Total running time: 41 seconds 2022-08-16 17:03:29 INFO: Results written in /disk3/default/V2/admin/core/data/Dickeya1660667669/outBusco/Dickeya_solani_PPO9134 2022-08-16 17:03:29 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-16 17:03:29 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-16 17:03:30 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/16/2022 17:03:30 ***** 2022-08-16 17:03:30 INFO: Configuring BUSCO with local environment 2022-08-16 17:03:30 INFO: Mode is genome 2022-08-16 17:03:30 INFO: Downloading information on latest versions of BUSCO data... 2022-08-16 17:03:42 INFO: Input file is /disk3/default/V2/admin/core/data/Dickeya1660667669/Dickeya_solani_RNS05.1.2A_Contig.fna 2022-08-16 17:03:42 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-16 17:03:42 INFO: Running 1 job(s) on bbtools, starting at 08/16/2022 17:03:42 2022-08-16 17:03:43 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-16 17:03:43 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-16 17:03:43 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-16 17:03:43 INFO: Running 1 job(s) on prodigal, starting at 08/16/2022 17:03:43 2022-08-16 17:03:52 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-16 17:03:52 INFO: Genetic code 11 selected as optimal 2022-08-16 17:03:52 INFO: ***** Run HMMER on gene sequences ***** 2022-08-16 17:03:52 INFO: Running 440 job(s) on hmmsearch, starting at 08/16/2022 17:03:52 2022-08-16 17:03:57 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-16 17:04:01 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-16 17:04:05 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-16 17:04:09 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-16 17:04:12 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-16 17:04:15 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-16 17:04:17 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-16 17:04:19 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-16 17:04:21 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-16 17:04:23 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-16 17:04:23 INFO: Results: C:99.3%[S:99.1%,D:0.2%],F:0.2%,M:0.5%,n:440 2022-08-16 17:04:23 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.3%[S:99.1%,D:0.2%],F:0.2%,M:0.5%,n:440 | |437 Complete BUSCOs (C) | |436 Complete and single-copy BUSCOs (S) | |1 Complete and duplicated BUSCOs (D) | |1 Fragmented BUSCOs (F) | |2 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-16 17:04:23 INFO: BUSCO analysis done. Total running time: 41 seconds 2022-08-16 17:04:23 INFO: Results written in /disk3/default/V2/admin/core/data/Dickeya1660667669/outBusco/Dickeya_solani_RNS05.1.2A_Contig 2022-08-16 17:04:23 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-16 17:04:23 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-16 17:04:24 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/16/2022 17:04:24 ***** 2022-08-16 17:04:24 INFO: Configuring BUSCO with local environment 2022-08-16 17:04:24 INFO: Mode is genome 2022-08-16 17:04:24 INFO: Downloading information on latest versions of BUSCO data... 2022-08-16 17:04:36 INFO: Input file is /disk3/default/V2/admin/core/data/Dickeya1660667669/Dickeya_solani_RNS07.7.3B.fna 2022-08-16 17:04:37 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-16 17:04:37 INFO: Running 1 job(s) on bbtools, starting at 08/16/2022 17:04:37 2022-08-16 17:04:38 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-16 17:04:38 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-16 17:04:38 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-16 17:04:38 INFO: Running 1 job(s) on prodigal, starting at 08/16/2022 17:04:38 2022-08-16 17:04:46 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-16 17:04:46 INFO: Genetic code 11 selected as optimal 2022-08-16 17:04:46 INFO: ***** Run HMMER on gene sequences ***** 2022-08-16 17:04:46 INFO: Running 440 job(s) on hmmsearch, starting at 08/16/2022 17:04:46 2022-08-16 17:04:51 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-16 17:04:56 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-16 17:04:59 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-16 17:05:03 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-16 17:05:06 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-16 17:05:09 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-16 17:05:11 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-16 17:05:13 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-16 17:05:15 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-16 17:05:17 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-16 17:05:17 INFO: Results: C:99.5%[S:99.3%,D:0.2%],F:0.2%,M:0.3%,n:440 2022-08-16 17:05:17 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.5%[S:99.3%,D:0.2%],F:0.2%,M:0.3%,n:440 | |438 Complete BUSCOs (C) | |437 Complete and single-copy BUSCOs (S) | |1 Complete and duplicated BUSCOs (D) | |1 Fragmented BUSCOs (F) | |1 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-16 17:05:17 INFO: BUSCO analysis done. Total running time: 41 seconds 2022-08-16 17:05:17 INFO: Results written in /disk3/default/V2/admin/core/data/Dickeya1660667669/outBusco/Dickeya_solani_RNS07.7.3B 2022-08-16 17:05:17 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-16 17:05:17 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-16 17:05:18 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/16/2022 17:05:18 ***** 2022-08-16 17:05:18 INFO: Configuring BUSCO with local environment 2022-08-16 17:05:18 INFO: Mode is genome 2022-08-16 17:05:18 INFO: Downloading information on latest versions of BUSCO data... 2022-08-16 17:05:31 INFO: Input file is /disk3/default/V2/admin/core/data/Dickeya1660667669/Dickeya_solani_RNS_08.23.3.1.A.fna 2022-08-16 17:05:31 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-16 17:05:31 INFO: Running 1 job(s) on bbtools, starting at 08/16/2022 17:05:31 2022-08-16 17:05:32 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-16 17:05:32 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-16 17:05:32 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-16 17:05:32 INFO: Running 1 job(s) on prodigal, starting at 08/16/2022 17:05:32 2022-08-16 17:05:41 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-16 17:05:41 INFO: Genetic code 11 selected as optimal 2022-08-16 17:05:41 INFO: ***** Run HMMER on gene sequences ***** 2022-08-16 17:05:41 INFO: Running 440 job(s) on hmmsearch, starting at 08/16/2022 17:05:41 2022-08-16 17:05:46 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-16 17:05:51 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-16 17:05:54 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-16 17:05:58 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-16 17:06:01 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-16 17:06:04 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-16 17:06:06 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-16 17:06:08 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-16 17:06:10 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-16 17:06:12 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-16 17:06:12 INFO: Results: C:99.5%[S:99.3%,D:0.2%],F:0.2%,M:0.3%,n:440 2022-08-16 17:06:12 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.5%[S:99.3%,D:0.2%],F:0.2%,M:0.3%,n:440 | |438 Complete BUSCOs (C) | |437 Complete and single-copy BUSCOs (S) | |1 Complete and duplicated BUSCOs (D) | |1 Fragmented BUSCOs (F) | |1 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-16 17:06:12 INFO: BUSCO analysis done. Total running time: 42 seconds 2022-08-16 17:06:12 INFO: Results written in /disk3/default/V2/admin/core/data/Dickeya1660667669/outBusco/Dickeya_solani_RNS_08.23.3.1.A 2022-08-16 17:06:12 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-16 17:06:12 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-16 17:06:13 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/16/2022 17:06:13 ***** 2022-08-16 17:06:13 INFO: Configuring BUSCO with local environment 2022-08-16 17:06:13 INFO: Mode is genome 2022-08-16 17:06:13 INFO: Downloading information on latest versions of BUSCO data... 2022-08-16 17:06:25 INFO: Input file is /disk3/default/V2/admin/core/data/Dickeya1660667669/Dickeya_solani_RNS10-27-2A.fna 2022-08-16 17:06:26 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-16 17:06:26 INFO: Running 1 job(s) on bbtools, starting at 08/16/2022 17:06:26 2022-08-16 17:06:27 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-16 17:06:27 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-16 17:06:27 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-16 17:06:27 INFO: Running 1 job(s) on prodigal, starting at 08/16/2022 17:06:27 2022-08-16 17:06:35 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-16 17:06:35 INFO: Genetic code 11 selected as optimal 2022-08-16 17:06:35 INFO: ***** Run HMMER on gene sequences ***** 2022-08-16 17:06:35 INFO: Running 440 job(s) on hmmsearch, starting at 08/16/2022 17:06:35 2022-08-16 17:06:41 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-16 17:06:45 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-16 17:06:48 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-16 17:06:52 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-16 17:06:55 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-16 17:06:58 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-16 17:07:01 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-16 17:07:03 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-16 17:07:05 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-16 17:07:06 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-16 17:07:06 INFO: Results: C:99.5%[S:99.3%,D:0.2%],F:0.2%,M:0.3%,n:440 2022-08-16 17:07:06 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.5%[S:99.3%,D:0.2%],F:0.2%,M:0.3%,n:440 | |438 Complete BUSCOs (C) | |437 Complete and single-copy BUSCOs (S) | |1 Complete and duplicated BUSCOs (D) | |1 Fragmented BUSCOs (F) | |1 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-16 17:07:06 INFO: BUSCO analysis done. Total running time: 41 seconds 2022-08-16 17:07:06 INFO: Results written in /disk3/default/V2/admin/core/data/Dickeya1660667669/outBusco/Dickeya_solani_RNS10-27-2A 2022-08-16 17:07:06 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-16 17:07:06 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO 2022-08-16 17:07:07 INFO: ***** Start a BUSCO v5.4.1 analysis, current time: 08/16/2022 17:07:07 ***** 2022-08-16 17:07:07 INFO: Configuring BUSCO with local environment 2022-08-16 17:07:07 INFO: Mode is genome 2022-08-16 17:07:07 INFO: Downloading information on latest versions of BUSCO data... 2022-08-16 17:07:20 INFO: Input file is /disk3/default/V2/admin/core/data/Dickeya1660667669/Dickeya_solani_Sp1a.fna 2022-08-16 17:07:20 INFO: Running BUSCO using lineage dataset enterobacterales_odb10 (prokaryota, 2021-02-23) 2022-08-16 17:07:20 INFO: Running 1 job(s) on bbtools, starting at 08/16/2022 17:07:20 2022-08-16 17:07:21 INFO: [bbtools] 1 of 1 task(s) completed 2022-08-16 17:07:21 INFO: ***** Run Prodigal on input to predict and extract genes ***** 2022-08-16 17:07:21 INFO: Running Prodigal with genetic code 11 in single mode 2022-08-16 17:07:21 INFO: Running 1 job(s) on prodigal, starting at 08/16/2022 17:07:21 2022-08-16 17:07:29 INFO: [prodigal] 1 of 1 task(s) completed 2022-08-16 17:07:29 INFO: Genetic code 11 selected as optimal 2022-08-16 17:07:29 INFO: ***** Run HMMER on gene sequences ***** 2022-08-16 17:07:29 INFO: Running 440 job(s) on hmmsearch, starting at 08/16/2022 17:07:29 2022-08-16 17:07:34 INFO: [hmmsearch] 44 of 440 task(s) completed 2022-08-16 17:07:38 INFO: [hmmsearch] 88 of 440 task(s) completed 2022-08-16 17:07:42 INFO: [hmmsearch] 132 of 440 task(s) completed 2022-08-16 17:07:45 INFO: [hmmsearch] 176 of 440 task(s) completed 2022-08-16 17:07:49 INFO: [hmmsearch] 220 of 440 task(s) completed 2022-08-16 17:07:51 INFO: [hmmsearch] 264 of 440 task(s) completed 2022-08-16 17:07:54 INFO: [hmmsearch] 308 of 440 task(s) completed 2022-08-16 17:07:56 INFO: [hmmsearch] 352 of 440 task(s) completed 2022-08-16 17:07:58 INFO: [hmmsearch] 396 of 440 task(s) completed 2022-08-16 17:08:00 INFO: [hmmsearch] 440 of 440 task(s) completed 2022-08-16 17:08:00 INFO: Results: C:99.5%[S:99.3%,D:0.2%],F:0.2%,M:0.3%,n:440 2022-08-16 17:08:00 INFO: -------------------------------------------------- |Results from dataset enterobacterales_odb10 | -------------------------------------------------- |C:99.5%[S:99.3%,D:0.2%],F:0.2%,M:0.3%,n:440 | |438 Complete BUSCOs (C) | |437 Complete and single-copy BUSCOs (S) | |1 Complete and duplicated BUSCOs (D) | |1 Fragmented BUSCOs (F) | |1 Missing BUSCOs (M) | |440 Total BUSCO groups searched | -------------------------------------------------- 2022-08-16 17:08:00 INFO: BUSCO analysis done. Total running time: 40 seconds 2022-08-16 17:08:00 INFO: Results written in /disk3/default/V2/admin/core/data/Dickeya1660667669/outBusco/Dickeya_solani_Sp1a 2022-08-16 17:08:00 INFO: For assistance with interpreting the results, please consult the userguide: https://busco.ezlab.org/busco_userguide.html 2022-08-16 17:08:00 INFO: Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO Found 36 BUSCO runs: run_Dickeya_solani_MK10 run_Dickeya_solani_F012 run_Dickeya_solani_IFB0231 run_Dickeya_solani_IPO2222 run_Dickeya_solani_A623-S20-A17 run_Dickeya_solani_Ds0432-1 run_Dickeya_solani_IFB0417 run_Dickeya_solani_RNS_08.23.3.1.A run_Dickeya_solani_RNS05.1.2A_Contig run_Dickeya_solani_IFB0167 run_Dickeya_solani_IFB0487 run_Dickeya_solani_RNS07.7.3B run_Dickeya_solani_IFB_0158 run_Dickeya_solani_D12 run_Dickeya_solani_CH9918-774 run_Dickeya_solani_CH05026 run_Dickeya_solani_PPO9019 run_Dickeya_solani_RNS10-27-2A run_Dickeya_dadantii_NCPPB_898_NCPPB898 run_Dickeya_solani_IFB0421 run_Dickeya_solani_MIE35 run_Dickeya_solani_M21a run_Dickeya_solani_CH9635-1 run_Dickeya_solani_IFB0212 run_Dickeya_solani_IFB0223 run_Dickeya_solani_IPO2019 run_Dickeya_solani_IFB_0221 run_Dickeya_solani_GBBC2040 run_Dickeya_solani_MK16 run_Dickeya_solani_IFB0099 run_Dickeya_solani_Sp1a run_Dickeya_solani_IFB0695 run_Dickeya_solani_Am3a run_Dickeya_solani_CH07044 run_Dickeya_solani_PPO9134 run_Dickeya_solani_IFB0311 75170at91347 36 77165at91347 36 67620at91347 36 73798at91347 36 4673at91347 36 30994at91347 36 12745at91347 36 36271at91347 35 87971at91347 36 38228at91347 36 37391at91347 36 40851at91347 36 56156at91347 36 61690at91347 36 48208at91347 36 2121at91347 36 56764at91347 35 80524at91347 36 90433at91347 36 46945at91347 36 46906at91347 36 46153at91347 36 30360at91347 36 75392at91347 36 19201at91347 36 85931at91347 36 38762at91347 36 49743at91347 35 53337at91347 36 70738at91347 35 81206at91347 36 54393at91347 36 74115at91347 35 75116at91347 36 78998at91347 36 21912at91347 36 82918at91347 36 5392at91347 35 95359at91347 36 88329at91347 36 41092at91347 35 35539at91347 36 38913at91347 36 51348at91347 36 74260at91347 36 52934at91347 36 52719at91347 36 92241at91347 36 87137at91347 36 65961at91347 36 44707at91347 35 84972at91347 36 11342at91347 36 64091at91347 36 6335at91347 36 61400at91347 36 68569at91347 36 29648at91347 36 56258at91347 36 37096at91347 35 58562at91347 35 54756at91347 36 86761at91347 35 74209at91347 35 34836at91347 36 27549at91347 35 92685at91347 36 54184at91347 36 92695at91347 36 65824at91347 35 23303at91347 36 2659at91347 36 75999at91347 35 7453at91347 36 95313at91347 36 70283at91347 36 16772at91347 36 36137at91347 36 60967at91347 36 93644at91347 36 57151at91347 36 50042at91347 36 87813at91347 36 84909at91347 36 31545at91347 36 25024at91347 36 48224at91347 36 90346at91347 36 67100at91347 36 30417at91347 36 78786at91347 36 59851at91347 36 77687at91347 36 77060at91347 36 19461at91347 34 27820at91347 36 56253at91347 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36 39012at91347 36 77379at91347 35 11564at91347 36 79395at91347 36 64955at91347 36 91936at91347 36 11276at91347 35 94841at91347 36 4411at91347 36 92896at91347 36 53222at91347 36 18497at91347 35 56763at91347 35 22142at91347 36 56094at91347 36 63042at91347 36 80271at91347 36 52566at91347 36 24492at91347 36 38001at91347 35 83959at91347 36 19608at91347 35 2325at91347 34 11158at91347 29 43106at91347 35 13521at91347 35 363 BUSCOs are single copy in all 36 species